| Commit message (Collapse) | Author | Age | Files | Lines |
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While this code doesn't break any of the existing tests, it HAS NOT
been tested beyond that.
Also mods needed to integrate the journaling code with Quincey's latest
mods, and to adapt existing test code to slight changes caused by the
addition of journaling.
Finally, fixed an undefined variable bug in the HL code exposed by the
journaling mods.
Tested serial under Linux (Phoenix) and parallel under Linux (Kagiso).
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Add "_META" suffix to FUNC_ENTER/FUNC_LEAVE API routines that can modify
metadata in the file. This will give us a single place to change to recording
the beginning & ending of transactions.
Tested on:
FreeBSD/32 6.2 (duty)
Too simple to require h5committest
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metadata
journaling branch. This version may not compile.
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Move H5Gget_objinfo() to deprecated symbols section and retarget
internal usage to H5Lget_info()/H5Oget_info().
Misc. other code cleanups...
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 2.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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Description:
Windows does not accept the buffer size parameter of setvbuf to be less than 2. Previously, we had our fix split between two files, H5private.h and the Windows H5pubconf.h. This was a problem for MinGW, because it generates its own H5private.h. This moves the fix out of H5pubconf.h and into H5private.h.
This shouldn't affect other platforms.
Tested:
MinGW on WinXP
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WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform.
Tested:
Visual Studio (32- and 64-bit) on Win XP
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Updated command files; added "extern "C"" for HDremove_all function.
Platforms tested:
VMS server; kagiso - very minor and affects only VMS
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if available, to support big
files. 2. added a check in test/big.c to make sure the system supports big file.
Tested on smirom because already tested the same changes for v1.6 on liberty, smirom,
copper, and sol.
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instead of char *
This function is only used on VMS
Platforms tested:
kagiso, VMS is still going.
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Fix error introduced into driver info block size computation, which caused
the test/big test to fail.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Further cleanups to superblock code:
- Move most of the ISOHM-specific code into the H5SM module
- Make only one checksum, for combined superblock & driver info
block
Minor other cleanups, etc.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 6.2 (duty)
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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since it's now
used in H5Opublic.h.
This should fix build errors on Windows.
Tested on kagiso; will test on Windows immediately after checkin.
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Get rid of two different types of fill value struct (merge H5O_fill_t
and H5O_fill_new_t) and clean up & simplify dataset initialization code.
(In preparation for shared object header message method call
refactoring).
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.8 (amazon)
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version of
superblock).
Tried to standardize sizes and added #defines to H5Fpkg.h so that hopefully
the code is a little easier to read.
Of course this is a file format change.
Tested on Windows, juniper, smirom, kagiso.
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When using the latest version of the file format, move the "modification
time" information into the object header prefix, which is more efficient.
Also add "access time" and "change time" (for metadata) fields, all of which
take about the same space as the previous modification time header message.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Move the definition of the typedef for uint64_t from H5private.h to
H5public.h (to fix Windows builds)
Tested on:
None - just eyeballed.
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This feature is still in progress; Shared Object Header Messages are not
complete as a feature and are not thoroughly tested. There are still
"TODO" comments in the code (comments with the word "JAMES" in them,
so as not to be confused with other TODO comments).
Hopefully this checkin will reduce the liklihood of conflicts as I finish
implementing this feature.
All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
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Add H5Lget_name_by_idx routine & tests
Move more H5G routines to deprecated API file
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & enable_compat1.6
AIX/32 5.? (copper) w/parallel & FORTRAN
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Make API routines that don't initialize the library more consistent, to
help with future internal library changes.
Tested on:
Linux/64 2.6 (chicago2)
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partial I/O for reading data
may not work well for Direct I/O because of the requirement for data alignment. Took it out.
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Add 'initval' parameter to "lookup3" checksum routine (and implicitly to
the metadata checksum routine), to allow chaining several checksums together
easily (which isn't used by these modules, but will be used in my next checkin)
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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int64_t is only
defined in H5private.h.
Moved definition of int64_t from H5private.h to H5public.h as a temporary
solution.
Tested on heping and Windows (windows also needed H5Gdense.c and H5Gbtree2.c
to be added to hdf5 project).
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Add 'loookup3' checksum routine and switch to using it for metadata
checksums - it's just as "strong" as the CRC32 and about 40% faster in general
(with some compiler optimizations, it's nearly as fast as the fletcher-32
algorithm).
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Add a CRC algorithm to the library, initially for "small" (<256 byte)
metadata blocks.
Update checksum tests to verify it's working correctly.
Tested:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
(Will be testing on more platforms after checkin)
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Provide more abstract internal routine for computing checksums on metadata
in a file. This will allow a unified policy on which algorithm to choose and
under what criteria (length probably) to be more easily maintained.
Tested On:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Break out a bunch of the misc. routines that were in src/H5.c into more
specific modules.
Add optimized fletcher32 checksum routine, for checksumming metadata as
well as raw data.
Tested On:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Will test further after checkin...
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Users can create external links using H5L_create_external(). These links
point to an object in another HDF5 file. Users can alter the behavior of
external links or create new kinds of links by registering callbacks
using the H5L interface.
Added tests, tools support, etc.
Also a number of other, minor changes have been made (some restructuring of
the H5L interface, for instance).
Additional documentation and examples are forthcoming.
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Code cleanup
Description:
Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.
Platforms tested:
None necessary, whitespace only change
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Code checkpoint
Description:
Checkpoint fractal heap improvements, as well as move the free space
manager code that it's using into a separate package.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4/64 (mir) w/C++ & FORTRAN
Linux 2.4/32 (heping)
Solaris 2.9 (shanti)
AIX 5.? (copper) w/FORTRAN & parallel
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Bug fix.
Description:
Some machines (e.g., HPUX) will have off64_t defined but no support
for stat64 unless certain LargeFile macro is turned on. This caused
the last fix on H5private not quite right which caused compiling failures.
Solution:
Added stat64 and fstat64 tests and then will use them only if they
are supported.
Platforms tested:
Tested on kelgia, copper and heping (pll).
(Compiling alright but tests for kelgia and heping are not done.
expect no problems.)
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bug fix.
Description:
Previous H5private.h would attempt to use the off64_t/stat64/etc
by checking just sizeof __INT64 being 8. This caused errors in
some machines like alpha cluster which is a 64bit machine. Its
compiler supports the type __int64 but it does not support
off64_t since its off_t is already 64bits big. The above code
casued the compiler to complain about the unknown off64_t and
such.
Solution:
H5private.h:
Changed the code to use the pseudo standard of off64_t/stat64/etc
only if sizeof(off_t) is not 64 bits AND sizeof(off64_t) exists
and is 64 bits. This assumes if off64_t is defined, all those
stat64, fstat64, etc are supported too.
configure.in:
configure:
Added the testing of sizeof(off64_t) to support the above solution.
Platforms tested:
h5committested. Also tested at LANL QSC.
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code cleanup
Description:
Finish H5FS->H5CS internal API name changes...
Platforms tested:
FreeBSD 4.11 (sleipnir) w/ & w/o --enable-codestack
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Description:
The file size test in C++ library failed on Copper because the
value returned by h5_get_file_size was intepreted incorrectly
due to different interger sizes.
Solution:
H5private.h: Added check to use stat64 and off64_t where appropriate.
h5test.c and h5test.h: used h5_stat_size_t in place of off_t.
tattr.cpp: used h5_stat_size_t in place of off_t.
Platforms tested:
Linux 2.4 (heping)
AIX 5.1 (copper)
SunOS 5.8 64-bit (sol) - still on going
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portibility issue to windows
Description:
setvbuf on visual studio 2005 needs the size to be greater or equal to 2.
<description of setvbuf from msdn library>
Buffer size in bytes. Allowable range: 2 <= size <=
INT_MAX (2147483647). Internally, the value supplied
for size is rounded down to the nearest multiple of 2.
h5import used linebuffer option of setvbuf for stderr and stdout and the size is
0 by default. This causes core dump with visual 2005 on windows 64-bit.
Solution:
1. Use HDsetvbuf inside h5import.c,
2. Define HDsetvbuf inside windows H5pubconf.h for windows to work around
the core dump of h5import test. This is probably a bug inside visual studio 2005.
Platforms tested:
h5committest
windows 6.0 at XP
visual 2005 at XP-64bit
Misc. update:
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Description: Unix remove function removes only the latest version of a file
on VMS. Some of our tests create multiple versions of the testfiles
and as a result, test programs may be confused, give false negative result,
etc.
Solution: Created HDremove_all function for VMS that removes all versions of the files.
HDremove on VMS is an alias to HDremove_all.
Platforms tested: VMS server and heping (to check that nothing is borken on UNIX side)
Misc. update:
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Code checkpoint
Description:
Update fractal heap code to insert & read heaps up to 64MB in size
(with my current configuration paramaters) and add initial support for
iteratively walking down nested indirect blocks.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (chicago)
Solaris 9 (shanti)
Linux 2.4 (mir) w/64-bit
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Code cleanup
Description:
Re-alphabetize the POSIX routines (again). Also, add proper prototype
to HDrand() definition.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Bug fix
Description:
There was a duplicate definition for HDsrandom and HDsrand left over in H5private.h
Solution:
Removed the two duplicate definitions.
Platforms tested:
heping (minor change)
Misc. update:
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Optimization
Description:
Get rid of unnecessary function call for systems that don't have rand_r.
Solution:
If rand_r isn't present on a system, then macros can be used to simply call
the underlying random function instead of calling the HDrand/HDsrand functions
that keep track of the random seed within the library.
Platforms tested:
heping (minor change)
Misc. update:
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Code cleanup
Description:
Re-alphabetize POSIX macros.
Platforms tested:
None, just eyeballed, too minor.
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Bug fix
Description:
Clean up a few code mis-matches that crept in during the last checkin.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5commitest
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New feature
Description:
Update "power of two" macro and add "general" log2() routine.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Description: Made small changes to sec2 driver to reflect that VMS systems ino_t is 1dim array
of size 3; all changes are marked with H5_VMS variable.
Defined HDremove macro for VMS to remove multiple versions of the files.
Solution:
Platforms tested: heping, VMS server
Misc. update:
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Description:
Two functions (HDsrand and HDrand) are not declared. They caused
compiling errors on Windows. Declare these two functions:
H5_DLL int HDrand();
H5_DLL void HDsrand(unsigned int seed);
Solution:
Platforms tested:
Windows XP and heping
Misc. update:
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Bug fix/Feature
Description:
Modify the library to use rand_r, when available, instead of srand. If
rand_r is not available, it will try to use srandom/random, and then finally
fall back to srand/rand.
Solution:
A couple places in the library use the srand() function to seed the random
number generator. This can cause problems on certain platforms and could theoretically
cause problems for users who expect a certain sequence of random numbers following their
own call to srand().
Most platforms have an implementation of rand_r, which is identical to rand, except that
it allows for explicit storage of the seed value. The configure script will now check
for the existence of rand_r to facilitate its use in the library.
Two new functions are added, to replace the macros HDsrand/HDrand. These functions are HDrand and
HDsrand. HDrand will call rand_r, if available, or random(), if available, and fall back to rand() if neither
of those is available. HDsrand will store the seed value locally, if rand_r is available. Otherwise, it will call
srandom if available, and fall back to srand otherwise.
Platforms tested:
heping, mir. Really need to test on Red Storm, since that platform motivated this fix, but the machine
is currently not available.
Misc. update:
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New feature & code cleanup
Description:
Update fractal heap to be able to insert objects into a direct block
hanging off the header.
Extract "octal dump" code into separate routine so that both the local
heaps & fractal heaps can use it.
Other code cleanups & support to get this far.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
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Bug fix
Description:
Retrieving an object's name could fail (in various ways) under certain
circumstances (mostly having to do with mounted files).
Solution:
Re-write & simplify "get object name" code to fix error in a better way
than adding yet another hack to the previous pile of hacks... :-)
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
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New feature
Description:
Add in a combination of Peter's & my code to support copying
variable-length data from one file to another, although currently only
supported with contiguous data storage.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
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Cleanup.
Description:
Removed the home-made version of snprintf and vsnprintf since they
do not actually enforce the size parameter correctly and could corrupt
memory or as a security hole.
This block of code has been turned off since Aug 11, 2005 for all platforms
except Tflops. No one has reported any problem since--sort of empirical
evidence that all platforms except Tflops support both functions.
Tflops has retired in September. So, no need to keep this block of code.
Also, fixed the HDxxx macro to call the corresponding xxx function.
Platforms tested:
Tested in heping, both serial and parallel.
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