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* Major rework of H5PL package code before bringing VOL changesDana Robinson2017-07-141-0/+50
| | | | | | | | over. Brings coding standards in line with the rest of the library, enforces better software engineering principles, and makes everything more maintainable.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Update cmake pubconf to match autotools and add strtoll checksAllen Byrne2017-03-161-16/+17
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* Fix bad implementation of Windows nanosleep equivalent.Dana Robinson2016-12-121-4/+3
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* Added Windows-only versions of the round() functions, which do notderobins2016-12-021-0/+50
| | | | | | exist in VS2012 and earlier. Tested on: 32-bit Windows 7 w/ VS2012 Pro
* Bring over support for retrying metadata cache entry loads, along with all theQuincey Koziol2016-11-201-0/+81
| | | | supporting metadata cache callback changes, etc.
* Code style and warning cleanups, from revise_chunks branch.Quincey Koziol2016-11-061-1/+1
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* [svn-r30189] Description:Quincey Koziol2016-07-181-15/+14
| | | | | | | | | Clean up more warnings: drop the warning count from ~1310 down to ~940, with only 31 types of warnings in 148 files (down from 38 types in 167 files). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29482] Switched a few Visual Studio #ifdefs to Win32Dana Robinson2016-03-211-2/+2
| | | | Tested on 64-bit Win10 w/ VS 2015 Pro
* [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-221-10/+119
| | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
* [svn-r29084] Revert of:Dana Robinson2016-02-111-119/+10
| | | | | | | | | | | | | | | r29069 and 72 (gheap cleanup) r29041 and 43 (HDFFV-8740 external storage) These cause problems in the daily tests. They will be re-introduced when their respective problems have been addressed. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (check-vfd) w/ Fortran and C++ autotools parallel w/ Fortran CMake serial
* [svn-r29043] Fixes to make relative external storage work on Windows. Part ↵Dana Robinson2016-02-041-2/+2
| | | | | | | | | of HDFFV-8740. - Fixed typo in Wsetenv(). - Changed HDoff_t back to off_t in test/external.c. The function signature is off_t so the types must match or you can get conversion errors. Tested on 64-bit Windows 10 w/ VS 2015
* [svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵Dana Robinson2016-02-041-10/+119
| | | | | | | | | | | specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
* [svn-r28581] Brought flock changes over from revise_chunks as well as a fewDana Robinson2015-12-111-1/+111
| | | | | | | minor tweaks from H5private.h. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only, autotools and CMake (3.3.2)
* [svn-r28422] Description:Quincey Koziol2015-11-201-10/+10
| | | | | | | | | | Revert most of r27549, since revise_chunks code requires debugging contexts for v2 B-trees. Also, misc. warning cleanups and alignments w/changes on revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28416] Description:Quincey Koziol2015-11-201-21/+66
| | | | | | | | | Refactor time conversion code to put all the system-specific changes into one routine, H5_make_time, in H5system.c. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28236] Rework get timezone function to add another exclusion define ↵Allen Byrne2015-10-271-2/+6
| | | | | | | (H5_HAVA_TM_GMTOFF). Also needed to add prototype - followed lead of HDrand. Tested linux and windows
* [svn-r28234] Changed a C++-style comment to C-style.Dana Robinson2015-10-271-4/+6
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* [svn-r28229] HDFFV-9550: Rework timezone usage to localize the #ifdef blocks ↵Allen Byrne2015-10-261-0/+31
| | | | to a HDget_timezone function.
* [svn-r27572] Removed VMS-specific code from the library.Dana Robinson2015-08-241-60/+2
| | | | | | | | | The only remaining code consists of a few floating-point tests that rely on pre-generated and checked-in VMS files. These have been left alone, even though they will not be possible to recreate, since testing VMS float behavior is still important. Tested on: h5committest
* [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were inDana Robinson2015-03-111-1/+1
| | | | | | format strings. Tested on: h5committest
* [svn-r24726] Description:Quincey Koziol2014-02-201-8/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24285] Eliminate several "passing argument ... with different width ↵Larry Knox2013-10-101-2/+2
| | | | | | due to prototype" warnings by casting constants to size_t where expected by string functions. Tested on jam, koala,ostrich and platypus with h5committest.
* [svn-r23889] Description:Quincey Koziol2013-07-111-60/+93
| | | | | | | | | | | | | | Merge changes from Coverity branch to trunk: r20768: Switch to snprintf, HDstrncat, HDstrncpy to address coverity issue 832. r20812: Use HDstrncpy. --gh Tested on: Mac OSX/64 10.8.4 (amazon) w/debug Linux/32 2.4 (jam) w/debug
* [svn-r23862] Change printfs in perform output and h5dump to prevent overflow.Mohamad Chaarawi2013-07-031-1/+2
| | | | | | This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450 Tested on Jam.
* [svn-r23854] HDFFV-8302: Add macros/code function to use coorect Windows ↵Allen Byrne2013-07-011-0/+24
| | | | | | (v)snprintf statement. Also fix use other uses of macros for windows. Tested
* [svn-r23713] Description:Quincey Koziol2013-05-211-2/+2
| | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r23313] Description:Quincey Koziol2013-02-251-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch to the trunk: r20612: Changed string functions to versions with string length to fix coverity issues 922, 942 and 943. r20614: Use HDsnprintf. --gh r20675: Fix for coverity #1714 due to the fix for #810. Use HDfree() instead of H5MM_xfree(). r20678: Repaired coverity issue #598 -- failure to check return value from a call to fstat(), or to tidy up in the event of failure. r20679: Use HDstrncpy. --gh r20681: Use HDstrncat and HDstrncpy. --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/Debug, etc. (too minor to require h5committest)
* [svn-r23219] Description:Quincey Koziol2013-02-021-259/+267
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring reviewed changes from Coverity branch back to trunk (QK & JK): r20457: Coverity issue 691: return of H5duo could be negative. Fixed by using STDOUT_FILENO and redesign parse_command_line and main to cleanup file allocations. The output_file var is null when using stdout. In cleanup do not close output_file if NULL. r20510: Initialize ufid = -1 and predicate HDclose call on ufid != -1 r20511: Purpose: Fix coverity issue 1715 Description: Free "file" and nested data on failure in H5FD_core_open. r20512: Initialize ifid = -1 and predicate HDclose call on ifid != -1 r20514: Initialize h5fid = -1 and predicate HDclose call on h5fid != -1 r20516: Added else branch to the if (ret_value < 0) check. r20522: Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor potential buffer overwrite bugs, or coverity errors. Fixed by replacing strcpy and sprintf with strncpy and snprintf. r20523: fixed coverity issues 68, 1120, 1116i r20524: Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence. r20601: Purpose: Fix coverity issues 1703-1705 Description: Modified the cleanup code in test_free in accum.c to reset allocated buffers to NULL after they are freed, and modified the error cleanup code to check if these buffers are NULL before freeing them. Also fixed some unrelated warnings in accum.c. r20602: Use HDsnprintf and HDstrncat r20603: Purpose: Fix coverity issues 808-809 Description: Modified test_core in vfd.c to check the returns from malloc, and keep track of whether points and check are allocated by setting them to NULL when they are not. Added code to free points and check on error if they are not NULL. Also fixed unrelated warnings in vfd.c. r20604: Use HDstrncpy. r20605: Use HDstrncpy and HDstrncat. r20606: Purpose: Fix coverity issue 807 Description: Modified long_compact in stab.c to keep track of whether objname is allocated by setting it to NULL when it is not. Added code to free objname on error if it is not NULL. r20607: Changed string function calls to use versions that specify the string length to fix coverity issues 832 and 839. Tested on: Mac OSX/64 10.8.2 (amazon) (Too minor to require h5committest)
* [svn-r22450] Update winsock define to match autotools configure checkAllen Byrne2012-06-111-3/+3
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* [svn-r21919] Description:Quincey Koziol2012-02-091-1/+1
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21366] JIRA HDFFV-2748 replace use of _WIN32 in source. Created new ↵Allen Byrne2011-09-061-1/+1
| | | | | | defines H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines to use. These can be properly set during configurration. Tested: windows and local linux - reviewed internally
* [svn-r21228] Added #ifdefs around #include unistd.h and created windows ↵Allen Byrne2011-08-151-346/+367
| | | | | | getlogin() function for building HDF5 parallel on windows. Reviewed and tested locally and tested by user.
* [svn-r20499] Fixes erroneous H5_HAVE_GETTIMEOFDAY behavior on Windows (JIRA ↵Dana Robinson2011-04-141-5/+16
| | | | | | | | HDFFV-5931). Previously, H5_HAVE_GETTIMEOFDAY was never properly defined. The timezone struct and Wgettimeofday() timezone output was also added. This is a merge of several changesets from the log_vfd branch where this work took place: 20355, 20359, 20411, 20413, 20431, 20460 Tested on: Windows
* [svn-r20312] Change incorrect use of "struct stat" to use "h5_stat_t". Allen Byrne2011-03-241-2/+2
| | | | | | | Also removed includes from top of file - they are included with proper config checks in h5private.h. Changed name of Windows only gettimeofday function to avoid a define loop according to VS2008 Tested: local linux, windows
* [svn-r18616] Description:Quincey Koziol2010-04-221-16/+19
| | | | | | | | Clean up compiler warnings. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r18197] Description:Quincey Koziol2010-01-301-2/+2
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r17939] Description:Quincey Koziol2009-12-011-40/+49
| | | | | | | | | | | | | | | | | | | | | | | Handle external links from symlinked files by adding another check to look for "child" files for links from the actual location of the "parent" file, instead of from the location of the symlink. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16969] Updated perf_serial test to work on windows.Allen Byrne2009-05-211-0/+46
| | | | | Tested: Windows and h5committest
* [svn-r16316] Added support for OpenVMS pathname for external links.Raymond Lu2009-01-141-3/+25
| | | | Tested on jam. Tested v1.8 on OpenVMS.
* [svn-r15762] Changes for bug #1247 so that the user can specify the driverVailin Choi2008-10-031-1/+4
| | | | | | | | | | | | to use when opening the external linked target file. 1. Two new public routines are added to H5Plapl.c as well as "del/copy/close" callbacks for the property itself. 2. Modify H5L_extern_traverse() to use the fapl set via H5Pset_elink_fapl() and retrieve via H5Pget_elink_fapl(). 3. Add 3 tests to links.c to verify H5Pset/get_elink_fapl(). Also fix the compiler warning for the "if condition" in H5_build_extpath() of H5system.c.
* [svn-r15628] Description:Quincey Koziol2008-09-161-5/+5
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15211] Description:Quincey Koziol2008-06-131-4/+4
| | | | | | | | | | | | | | | | | | | | Update the gcc flags for version 4.3 Clean up warnings Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-0/+98
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-98/+0
| | | | New fortran wrappers added.
* [svn-r14794] Use putenv() instead of setenv() in test/links.c Vailin Choi2008-04-041-0/+2
| | | | (solaris did not support setenv() and unsetenv())
* [svn-r14789] Add handling for external link:Vailin Choi2008-04-021-0/+96
| | | | | | | 1. src/H5F.c, src/H5system.c: formulate path for mainfile 2. src/H5Lexternal.c: add search for target file 3. configure.in: add H5_HAVE_WINDOW_PATH 4. test/links.c: add tests for external link
* [svn-r13442] H5system.c file didn't include H5MMprivate.h; that caused ↵Elena Pourmal2007-03-021-1/+2
| | | | | | | | | warnings on VMS; fixed tfilter.cpp compilation failed on VMS; fixed by casting filter_bogus to (H5Z_func_t) Platforms tested: kagiso, VMS server
* [svn-r13434] Used const char * instead of char pointer for HDremove_all ↵Elena Pourmal2007-02-281-1/+1
| | | | | | | | | function that is used on VMS. This should fix C++ compilation failures on VMS. Platforms tested: kagiso, VMS is stilll going on.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
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