| Commit message (Collapse) | Author | Age | Files | Lines |
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over.
Brings coding standards in line with the rest of the library,
enforces better software engineering principles, and makes
everything more maintainable.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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exist in VS2012 and earlier.
Tested on: 32-bit Windows 7 w/ VS2012 Pro
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supporting metadata cache callback changes, etc.
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Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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Tested on 64-bit Win10 w/ VS 2015 Pro
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external dataset storage path behavior.
This check-in fixes a bug in the original check-in where the
external path stored in the file struct was not copied on reopen
causing subsequent dataset operations to fail.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial w/ fortran and C++
autotools parallel (MPICH 3.1.4) w/ fortran
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r29069 and 72 (gheap cleanup)
r29041 and 43 (HDFFV-8740 external storage)
These cause problems in the daily tests. They will be
re-introduced when their respective problems have been
addressed.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial (check-vfd) w/ Fortran and C++
autotools parallel w/ Fortran
CMake serial
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of HDFFV-8740.
- Fixed typo in Wsetenv().
- Changed HDoff_t back to off_t in test/external.c. The function signature is off_t so the types must match or you can get conversion errors.
Tested on 64-bit Windows 10 w/ VS 2015
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specified
for external dataset files set via H5Pset_external().
Resolves HDFFV-8740
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial
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minor tweaks from H5private.h.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial only, autotools and CMake (3.3.2)
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Revert most of r27549, since revise_chunks code requires debugging contexts
for v2 B-trees. Also, misc. warning cleanups and alignments w/changes on
revise_chunks branch.
Tested on:
MacOSX/64 10.11.1 (amazon) w/serial & parallel
(h5committest forthcoming)
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Refactor time conversion code to put all the system-specific changes into
one routine, H5_make_time, in H5system.c.
Tested on:
MacOSX/64 10.11.1 (amazon) w/serial & parallel
(h5committest forthcoming)
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(H5_HAVA_TM_GMTOFF).
Also needed to add prototype - followed lead of HDrand.
Tested linux and windows
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to a HDget_timezone function.
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The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.
Tested on: h5committest
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format strings.
Tested on: h5committest
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Revert some earlier usage of strncpy, which was incorrect.
Bring Coverity changes from branch back to trunk:
r20821:
Use HDstrncpy. --gh
(Fixed already, with strdup)
r20822:
(Not merged, incorrect use of HDstrncpy())
r20823:
(Not merged, incorrect use of HDstrncpy())
r20824:
Maintenance: Bug fix: addressed CID 666.
Value stored at *expression_len should be used in the call to
HD5packFstring to avoid overflow (and unnecessary arithmetic
calculation and casting)
r20825:
Issue 642: Added check for error and handler with print to stderr and exit.
r20826:
Undo revision 20818, as that issue has already been fixed in the 1.8 branch
and trunk (but not coverity branch)
r20827:
(Not merged, incorrect use of HDstrncpy())
r20828:
Use HDstrncpy. --gh
(Corrected use of strncpy())
r20829:
Check return of H5Lget_val(print_udata->fid, path, targbuf,
linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0.
Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL,
&filename, &objname) was successful and allow print. Otherwise filename
and objname are not created. (init those to NULL)
r20830:
resolved coverity issues 939, 940, 941, 944, and 947.
all were complaints about use of sprintf, and in all cases, the
buffers used were large enough for all eventualities.
Resolved issue by replacing calls to sprintf with calls
to snprintf.
r20831:
Maintenance: Addressed CID 852
Replaced sprintf with snprintf
r20832:
Purpose: Fix valgrind issues with hl/examples/ex_image2
Description:
Modified hl/examples/ex_image2 to free global "gbuf" before exit.
Tested on:
Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety
(too minor to require h5committest)
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due to prototype" warnings by casting constants to size_t where expected by string functions.
Tested on jam, koala,ostrich and platypus with h5committest.
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Merge changes from Coverity branch to trunk:
r20768:
Switch to snprintf, HDstrncat, HDstrncpy to address coverity issue 832.
r20812:
Use HDstrncpy. --gh
Tested on:
Mac OSX/64 10.8.4 (amazon) w/debug
Linux/32 2.4 (jam) w/debug
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This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450
Tested on Jam.
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(v)snprintf statement. Also fix use other uses of macros for windows.
Tested
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Clean up warnings, switch library code to use Standard C/POSIX wrapper
macros, remove internal calls to API routines, update checkapi and checkposix
scripts.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
Big-Endian Linux/64 (ostrich)
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Bring changes from Coverity branch to the trunk:
r20612:
Changed string functions to versions with string length to fix coverity issues
922, 942 and 943.
r20614:
Use HDsnprintf. --gh
r20675:
Fix for coverity #1714 due to the fix for #810.
Use HDfree() instead of H5MM_xfree().
r20678:
Repaired coverity issue #598 -- failure to check return value from a
call to fstat(), or to tidy up in the event of failure.
r20679:
Use HDstrncpy. --gh
r20681:
Use HDstrncat and HDstrncpy. --gh
Tested on:
Mac OSX/64 10.8.2 (amazon) w/Debug, etc.
(too minor to require h5committest)
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Bring reviewed changes from Coverity branch back to trunk (QK & JK):
r20457:
Coverity issue 691: return of H5duo could be negative. Fixed by using
STDOUT_FILENO and redesign parse_command_line and main to cleanup file
allocations. The output_file var is null when using stdout. In cleanup do not
close output_file if NULL.
r20510:
Initialize ufid = -1 and predicate HDclose call on ufid != -1
r20511:
Purpose: Fix coverity issue 1715
Description: Free "file" and nested data on failure in H5FD_core_open.
r20512:
Initialize ifid = -1 and predicate HDclose call on ifid != -1
r20514:
Initialize h5fid = -1 and predicate HDclose call on h5fid != -1
r20516:
Added else branch to the if (ret_value < 0) check.
r20522:
Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor
potential buffer overwrite bugs, or coverity errors. Fixed by replacing
strcpy and sprintf with strncpy and snprintf.
r20523:
fixed coverity issues 68, 1120, 1116i
r20524:
Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence.
r20601:
Purpose: Fix coverity issues 1703-1705
Description: Modified the cleanup code in test_free in accum.c to reset
allocated buffers to NULL after they are freed, and modified the error cleanup
code to check if these buffers are NULL before freeing them. Also fixed some
unrelated warnings in accum.c.
r20602:
Use HDsnprintf and HDstrncat
r20603:
Purpose: Fix coverity issues 808-809
Description: Modified test_core in vfd.c to check the returns from malloc, and
keep track of whether points and check are allocated by setting them to NULL
when they are not. Added code to free points and check on error if they are
not NULL. Also fixed unrelated warnings in vfd.c.
r20604:
Use HDstrncpy.
r20605:
Use HDstrncpy and HDstrncat.
r20606:
Purpose: Fix coverity issue 807
Description: Modified long_compact in stab.c to keep track of whether objname is
allocated by setting it to NULL when it is not. Added code to free objname on
error if it is not NULL.
r20607:
Changed string function calls to use versions that specify the string length
to fix coverity issues 832 and 839.
Tested on:
Mac OSX/64 10.8.2 (amazon)
(Too minor to require h5committest)
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Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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defines H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines to use. These can be properly set during configurration.
Tested: windows and local linux - reviewed internally
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getlogin() function for building HDF5 parallel on windows.
Reviewed and tested locally and tested by user.
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HDFFV-5931). Previously, H5_HAVE_GETTIMEOFDAY was never properly defined. The timezone struct and Wgettimeofday() timezone output was also added.
This is a merge of several changesets from the log_vfd branch where this work took place: 20355, 20359, 20411, 20413, 20431, 20460
Tested on: Windows
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Also removed includes from top of file - they are included with proper config checks in h5private.h.
Changed name of Windows only gettimeofday function to avoid a define loop according to VS2008
Tested: local linux, windows
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Clean up compiler warnings.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
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Trim trailing whitespace from source code files with this command:
find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'
Tested on:
None - eyeballed only
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Handle external links from symlinked files by adding another check to
look for "child" files for links from the actual location of the "parent" file,
instead of from the location of the symlink.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Tested:
Windows and h5committest
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Tested on jam. Tested v1.8 on OpenVMS.
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to use when opening the external linked target file.
1. Two new public routines are added to H5Plapl.c as well as
"del/copy/close" callbacks for the property itself.
2. Modify H5L_extern_traverse() to use the fapl set via
H5Pset_elink_fapl() and retrieve via H5Pget_elink_fapl().
3. Add 3 tests to links.c to verify H5Pset/get_elink_fapl().
Also fix the compiler warning for the "if condition" in
H5_build_extpath() of H5system.c.
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Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
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Update the gcc flags for version 4.3
Clean up warnings
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.5.3 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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New fortran wrappers added.
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(solaris did not support setenv() and unsetenv())
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1. src/H5F.c, src/H5system.c: formulate path for mainfile
2. src/H5Lexternal.c: add search for target file
3. configure.in: add H5_HAVE_WINDOW_PATH
4. test/links.c: add tests for external link
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warnings on VMS; fixed
tfilter.cpp compilation failed on VMS; fixed by casting filter_bogus to (H5Z_func_t)
Platforms tested:
kagiso, VMS server
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