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* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-2/+2
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* First cut of the H5 public API documentation. (#80)Gerd Heber2020-11-181-0/+1
| | | | | | | | | | | | | | | | | | | | | * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch.
* Clang-format of source filesAllen Byrne2020-09-301-689/+690
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* Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-09-031-44/+44
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| * Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-1/+1
| | | | | | | | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
| * Fixed bad parens in H5trace.cDana Robinson2020-07-311-43/+43
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* | Fix fprintf arguments: "%p" expects a `void *` argument.David Young2020-07-071-3/+3
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* | Squash my changes on branch `fprintf-experiment` into one commit forDavid Young2020-07-071-10/+10
|/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | reapplication to my new warnings branch, `warnings-again`. These changes are included: commit 915551b7bf64e777dd2007386ec77b1d117770da Merge: 63858c2 a8892bb Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:39:49 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9 Merge: 5c911d8 f907b51 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:33:54 2019 -0600 Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b': Oops, remove more C99 designated initializers for VS 2010 compatibility. commit 63858c22e168acaec0af8ced6641f26102cc6bb0 Merge: 20ae787 5c911d8 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:04:42 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit 5c911d8baf3ee7fe654269088eebdf07f59a8192 Merge: b8a5671 62208b0 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 16:58:27 2019 -0600 Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits) Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. ... commit 20ae7877e33931b95e8c3502b027d6c3fe94a11f Merge: 46f8c61 edd5297 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:34:09 2019 -0600 Merge remote-tracking branch 'origin/add-werror-and-squash-some' into fprintf-experiment commit 46f8c613d5117a8be5bc8385a072daa0b4262f06 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:29:00 2019 -0600 GCC really wants us to use `ll` to format `long long`, so try to make that work before any other format modifier. Seems like we're not compiling the autoconf test program with -Werror=format ? Probably should. commit eee35b8ef3759c391327cd48a9b3c56b6f8abc99 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:28:05 2019 -0600 It's hard to know just how wide an HDoff_t will be, and I don't think POSIX or C standards provide a PRI macro for it, so cast to intmax_t and format using PRIdMAX. commit 86eab12df7a89b546a38e99f8178dd2adbcb3433 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:26:25 2019 -0600 URemove some casts.se the right format string for the argument. Here and there stop casting a printf argument. commit f722f7cbecbaa99449941484b014426f62f1bed5 Merge: 58e3743 6d5ec83 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 14:44:16 2019 -0600 Merge branch 'add-werror-and-squash-some' into fprintf-experiment commit 58e3743b7faa9836606ee91798fe80dfc0040da7 Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 21:07:21 2019 -0600 Remove custom HDfprintf implementation, using the standard library's, instead. Take a swipe at repairing fprintf format strings, mainly replacing "%Hu" with "%" PRIuHSIZE, "%a" with "%" PRIuHADDR, "%Zu" with "%zu". Here and there remove an awkward cast of a printf argument to `long long` and use PRI[doux]8, PRI[doux]32, or PRI[doux]64, instead. Change occurrences of "%t" to "%s" and perform a suitable change of argument, `cond` -> `cond ? "TRUE" : "FALSE"`. Some occurrences of %Hu, %a, and %t remain, they just weren't flagged by the compiler because of #ifdef'age. commit d4366909293fa970c23512ac80e5d865d76cddbf Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 20:54:32 2019 -0600 Promote format-string warnigns to errors.
* Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-261-617/+1664
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| * Update printf pointer syntax and revert fortran to f2003Allen Byrne2020-04-061-106/+106
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| * Add routines to query the library's free list sizes and allocation stats.Quincey Koziol2020-03-101-1/+1
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| * Switch the 'get offset' operation from a dataset 'get' callback to a [native]Quincey Koziol2020-02-281-3/+3
| | | | | | | | dataset 'optional' operation.
| * Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""Dana Robinson2020-01-231-1/+1
| | | | | | | | This reverts commit 6486e06545bf637d46e18a787395542f4fca143a.
| * Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-3/+25
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| * Refactor H5Dvlen_get_buf_size to use optional dataset operation, with ↵Quincey Koziol2019-12-211-3/+3
| | | | | | | | generic fallback for VOL connectors that don't implement operation
| * Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2019-12-201-3/+403
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
| * Modify H5VL initialization routines to initialize all VOL-managed objectNeil Fortner2019-12-121-0/+6
| | | | | | | | | | types. Modify H5VLwrap_register() to reject non-VOL-managed object types. Also fix overisights in h5trace.c from previous changes.
| * Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILEJerome Soumagne2019-11-271-0/+3
| | | | | | | | Remove H5F__get_file_id() and use only private routine instead
| * Add new H5R API that abstracts object, region and attribute reference typesJerome Soumagne2019-10-081-18/+60
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also support references to external files Add new H5T_REF type and type conversion routines Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF Add H5Treclaim() API to reclaim memory of vlen/reference types Deprecate H5Dvlen_reclaim() Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback Add H5T_ref_reclaim() Move previous H5R APIs to H5Rdeprec.c Clean up H5Ocopy Separate H5O_copy_expand_ref() to H5Ocopy_ref() Add support for copying new reference types Clean up deprecated routines to go through VOL and same code path Fix return codes in existing trefer.c test Rename trefer.c to trefer_deprec.c trefer.c is for new references Add performance test for trefer Add additional obj_copy_ref test Make use of tokens and blobs to store references Skip blob encoding for object references Start adding new reference examples
| * Remove ability to loc by ref from H5VL layerJerome Soumagne2019-10-081-12/+0
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| * Add H5VL_OBJECT_GET_TYPE to get object typeJerome Soumagne2019-10-081-0/+6
| | | | | | | | Add H5VL_OBJECT_LOOKUP to lookup objects
| * Adapt Jerome's "file info" H5VL 'get' query to retrieve container token info.Quincey Koziol2019-10-081-3/+6
| | | | | | | | Remove "by address" location for VOL operations. (Switching to "by token")
| * Fix H5VL_blob_get to return size of blobJerome Soumagne2019-10-081-0/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix const in blob API Add H5HG_HEAP_ID_SIZE macro to return native blob size Add maximum size for blobs Fix blob API callbacks to pass VOL file object Add public wrappers for blob VOL API Implement passthrough blob callbacks Update H5Tvlen after callback changes Update trace information for H5VL blob routines Fix public header inclusion in native and passthru headers
| * Update versioning to next major versionAllen Byrne2019-09-251-5/+9
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| * Added the map (H5M) APIDana Robinson2019-08-131-1/+13
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| * Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-1/+1
| | | | | | | | clean up warnings.
| * New hyperslab selection routines and new public selection iterator routines.Quincey Koziol2019-06-161-0/+8
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| * Added H5Fdelete call and VOL support (but no VFD/native implementation).Dana Robinson2019-06-111-0/+3
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| * Minor warning fixes:Dana Robinson2019-06-051-0/+3
| | | | | | | | | | * Fixed an error return value in H5Aint.c (NULL --> FAIL) * Added H5VL_FILE_GET_FILENO to H5trace.c
| * Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAMEJerome Soumagne2019-05-231-2/+2
| | | | | | | | Implement native H5VL_OBJECT_GET_NAME by addr
| * Set V112 as the latest format and extend the arrays of version bounds.Vailin Choi2019-04-041-1/+5
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| * Merge pull request #1390 in HDFFV/hdf5 from stackable_vol_fix_06 to developQuincey Koziol2018-12-181-3/+0
| |\ | | | | | | | | | | | | | | | * commit '3597bd469ff0073134b31765d9b87660cd3e0039': Revert change to MSC_VER, in favor of Dana's Remove H5VL_FILE_CACHE_VOL_CONN from file specific callbacks, as it turns out not to be necessary.
| | * Remove H5VL_FILE_CACHE_VOL_CONN from file specific callbacks, as it turns outQuincey Koziol2018-12-171-3/+0
| | | | | | | | | | | | | | | | | | not to be necessary. Also, correct _MSC_VER #ifdef
| * | Merge pull request #1364 in HDFFV/hdf5 from ↵Dana Robinson2018-12-171-8/+0
| |\ \ | | |/ | |/| | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5i_reference_removal to develop * commit 'e21c1cf7c6ee6dba5dd5bfd1a525227ac1304b53': Removed H5I_REFERENCE from the library. It has always been unused and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
| | * Removed H5I_REFERENCE from the library. It has always been unusedDana Robinson2018-12-081-8/+0
| | | | | | | | | | | | and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
| * | Added HD to va_* calls in a couple of library files.Dana Robinson2018-12-171-90/+90
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| * Switch H5VL_class_value_t from enum to unsigned integerQuincey Koziol2018-11-291-12/+5
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| * Update API tracing info for VOL functions and regenerate trace macros for VOLQuincey Koziol2018-11-281-0/+49
| | | | | | | | API calls.
| * Added 'notify' callback for async requests; switched VOL class and infoQuincey Koziol2018-11-281-2/+2
| | | | | | | | | | | | comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
| * Add VOL connector info to the flie access property list returned fromQuincey Koziol2018-11-181-0/+3
| | | | | | | | H5Fget_access_plist(). Also, other misc. cleanups, etc.
| * Switch switch remainder of API routines to use VOL callbacks.Quincey Koziol2018-11-101-0/+3
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| * Refactor, standardize, and revise the async request callbacks.Quincey Koziol2018-11-041-2/+2
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| * Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-3/+3
| | | | | | | | modified: test/dsets.c
| * VOL FEATUREDana Robinson2018-10-101-0/+474
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-544/+545
| |\ | | | | | | | | | merge_hyperslab_updates
| | * Modifications made based on comments from pull request.Vailin Choi2018-02-071-520/+520
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| | * Changes made based on code reviews.Vailin Choi2018-01-121-1/+2
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| | * Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-12-081-15/+15
| | |\ | | | | | | | | | | | | Merge from develop.
| | | * Normalization with VOL integration branch.Dana Robinson2017-11-301-15/+15
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| | * | Initial checkin for library version boundsVailin Choi2017-10-031-0/+6
| | |/ | | | | | | | | | Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
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