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* 1 12 Merges from develop (#421)Allen Byrne2021-03-041-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-201-1/+1
| | | | file - src and test directories.
* Basic alignment with async branch (#115) (#137)Quincey Koziol2020-11-301-2/+2
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Merge available RM doxygen from develop to hdf5 1 12 (#131)Larry Knox2020-11-261-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Snapshot version 1.12 release 1-3. Update version to 1.12.1-4. * First cut of the H5 public API documentation. (#80) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Full set of current H5F documentation. (#105) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Migrated documentation for SWMR functions. * Catching up on MDC functions. * Integrated the H5F MDC function documentation. * Added MDC and parallel H5F functions. * Slightly updated main page. * Added doxygen/dox/H5AC_cache_config_t.dox to MANIFEST. * Doxygen - added (mostly) beginner functions (#112) * Doxygen - added (mostly) beginner functions * Removed duplicate H5Pset_szip function * Add src/H5module.h to MANIFEST. Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com>
* Merge changes from developAllen Byrne2020-10-081-13/+13
| | | | | Comments and whitespace Skip file-locking and cache changes
* Source formattedAllen Byrne2020-10-011-731/+732
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* Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-221-1/+1
| | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* Sync with developDana Robinson2020-08-011-122/+141
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* Switch the 'get offset' operation from a dataset 'get' callback to a [native]Quincey Koziol2020-02-281-3/+3
| | | | dataset 'optional' operation.
* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-191-3/+25
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* Refactor H5Dvlen_get_buf_size to use optional dataset operation, with ↵Quincey Koziol2020-01-041-3/+3
| | | | generic fallback for VOL connectors that don't implement operation
* Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2020-01-041-3/+403
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
* Modify H5VL initialization routines to initialize all VOL-managed objectNeil Fortner2019-12-131-0/+6
| | | | | types. Modify H5VLwrap_register() to reject non-VOL-managed object types. Also fix overisights in h5trace.c from previous changes.
* Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILEJerome Soumagne2019-12-091-0/+3
| | | | Remove H5F__get_file_id() and use only private routine instead
* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-091-5/+1
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-061-1/+5
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* Add new H5R API that abstracts object, region and attribute reference typesJerome Soumagne2019-10-081-18/+60
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also support references to external files Add new H5T_REF type and type conversion routines Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF Add H5Treclaim() API to reclaim memory of vlen/reference types Deprecate H5Dvlen_reclaim() Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback Add H5T_ref_reclaim() Move previous H5R APIs to H5Rdeprec.c Clean up H5Ocopy Separate H5O_copy_expand_ref() to H5Ocopy_ref() Add support for copying new reference types Clean up deprecated routines to go through VOL and same code path Fix return codes in existing trefer.c test Rename trefer.c to trefer_deprec.c trefer.c is for new references Add performance test for trefer Add additional obj_copy_ref test Make use of tokens and blobs to store references Skip blob encoding for object references Start adding new reference examples
* Remove ability to loc by ref from H5VL layerJerome Soumagne2019-10-081-12/+0
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* Add H5VL_OBJECT_GET_TYPE to get object typeJerome Soumagne2019-10-081-0/+6
| | | | Add H5VL_OBJECT_LOOKUP to lookup objects
* Adapt Jerome's "file info" H5VL 'get' query to retrieve container token info.Quincey Koziol2019-10-081-3/+6
| | | | Remove "by address" location for VOL operations. (Switching to "by token")
* Fix H5VL_blob_get to return size of blobJerome Soumagne2019-10-081-0/+29
| | | | | | | | | | | | | | | | | | | | Fix const in blob API Add H5HG_HEAP_ID_SIZE macro to return native blob size Add maximum size for blobs Fix blob API callbacks to pass VOL file object Add public wrappers for blob VOL API Implement passthrough blob callbacks Update H5Tvlen after callback changes Update trace information for H5VL blob routines Fix public header inclusion in native and passthru headers
* Cleanup whitespace and comments compared to developAllen Byrne2019-10-021-4/+4
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* Added the map (H5M) APIDana Robinson2019-08-131-1/+13
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* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-1/+1
| | | | clean up warnings.
* New hyperslab selection routines and new public selection iterator routines.Quincey Koziol2019-06-161-0/+8
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* Added H5Fdelete call and VOL support (but no VFD/native implementation).Dana Robinson2019-06-111-0/+3
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* Minor warning fixes:Dana Robinson2019-06-051-0/+3
| | | | | * Fixed an error return value in H5Aint.c (NULL --> FAIL) * Added H5VL_FILE_GET_FILENO to H5trace.c
* Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAMEJerome Soumagne2019-05-231-2/+2
| | | | Implement native H5VL_OBJECT_GET_NAME by addr
* Set V112 as the latest format and extend the arrays of version bounds.Vailin Choi2019-04-041-1/+5
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* Merge pull request #1390 in HDFFV/hdf5 from stackable_vol_fix_06 to developQuincey Koziol2018-12-181-3/+0
|\ | | | | | | | | | | * commit '3597bd469ff0073134b31765d9b87660cd3e0039': Revert change to MSC_VER, in favor of Dana's Remove H5VL_FILE_CACHE_VOL_CONN from file specific callbacks, as it turns out not to be necessary.
| * Remove H5VL_FILE_CACHE_VOL_CONN from file specific callbacks, as it turns outQuincey Koziol2018-12-171-3/+0
| | | | | | | | | | | | not to be necessary. Also, correct _MSC_VER #ifdef
* | Merge pull request #1364 in HDFFV/hdf5 from ↵Dana Robinson2018-12-171-8/+0
|\ \ | |/ |/| | | | | | | | | ~DEROBINS/hdf5_der:h5i_reference_removal to develop * commit 'e21c1cf7c6ee6dba5dd5bfd1a525227ac1304b53': Removed H5I_REFERENCE from the library. It has always been unused and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
| * Removed H5I_REFERENCE from the library. It has always been unusedDana Robinson2018-12-081-8/+0
| | | | | | | | and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
* | Added HD to va_* calls in a couple of library files.Dana Robinson2018-12-171-90/+90
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* Switch H5VL_class_value_t from enum to unsigned integerQuincey Koziol2018-11-291-12/+5
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* Update API tracing info for VOL functions and regenerate trace macros for VOLQuincey Koziol2018-11-281-0/+49
| | | | API calls.
* Added 'notify' callback for async requests; switched VOL class and infoQuincey Koziol2018-11-281-2/+2
| | | | | | comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
* Add VOL connector info to the flie access property list returned fromQuincey Koziol2018-11-181-0/+3
| | | | H5Fget_access_plist(). Also, other misc. cleanups, etc.
* Switch switch remainder of API routines to use VOL callbacks.Quincey Koziol2018-11-101-0/+3
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* Refactor, standardize, and revise the async request callbacks.Quincey Koziol2018-11-041-2/+2
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* Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-3/+3
| | | | modified: test/dsets.c
* VOL FEATUREDana Robinson2018-10-101-0/+474
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-544/+545
|\ | | | | | | merge_hyperslab_updates
| * Modifications made based on comments from pull request.Vailin Choi2018-02-071-520/+520
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| * Changes made based on code reviews.Vailin Choi2018-01-121-1/+2
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| * Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-12-081-15/+15
| |\ | | | | | | | | | Merge from develop.
| | * Normalization with VOL integration branch.Dana Robinson2017-11-301-15/+15
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| * | Initial checkin for library version boundsVailin Choi2017-10-031-0/+6
| |/ | | | | | | Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
| * Suggested changes from code reviewJordan Henderson2017-07-071-4/+0
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| * Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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