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* Squashed commit of the token_refactoring branch:Dana Robinson2020-05-201-43/+32
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* Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2020-05-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
* Add a second bool argument to H5F_vfd_swmr_writer_end_of_tick() thatDavid Young2020-04-211-1/+1
| | | | | | | | | | | | | | | tells whether the call may wait for the reader tick to catch up. Add stub routines vfd_swmr_writer_may_increase_tick_to() and vfd_swmr_reader_did_increase_tick_to() for tests---e.g., vfd_swmr_zoo_writer/_reader---to use to coordinate their tick numbers. vfd_swmr_writer_may_increase_tick_to(new_tick, wait_for_reader) returns true if the writer may increase its tick number to `new_tick` without overrunning the reader. A reader uses vfd_swmr_reader_did_increase_tick_to() to tell a writer that its tick number has increased.
* Add my work in progress on variable-length string test for VFD SWMR.David Young2020-03-101-1/+1
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* Rename loglib_ / LOGLIB_ to hlog_ / HLOG_, remove the syslog-basedDavid Young2020-02-101-1/+2
| | | | | | | implementation, rename hlog_log() to hlog(), hlog_vlog() to vhlog(), et cetera. Rename hlog_lazy() to hlog_fast(). Define some log sinks and use them in the page buffer and in VFD SWMR.
* Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,David Young2019-12-091-14/+36
| | | | | | | | including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and I share. Now I need to put this branch on a fork with a less confusing name than vchoi_fork!
* Fix for punch list #9 Move VFD SWMR H5F code to its own file: H5Fvfd_swmr.c.vchoi2019-11-151-1/+1
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* Third batch of checkin:Vailin Choi2018-09-281-0/+1
| | | | | | | | | | 1) Free space manager for the metadata file 2) Delayed free space release linked list 3) H5F_update_vfd_swmr_metadata_file() 3) VFD SWMR driver: read callback 4) Flushing for VFD SWMR 5) Port one concurrent test from swmr test set 6) Bug fixes and refactoring
* Merge branch 'develop' of ↵Vailin Choi2018-09-261-5/+6
|\ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into feature/vfd_swmr Conflicts: src/H5AC.c src/H5F.c src/H5Pfapl.c Resolve conflicts for H5AC.c, H5F.c and H5Pfapl.c
| * Normalization with vol_integration (misc internal and datatype)Dana Robinson2018-09-201-3/+4
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| * HDFFV-9059 take file as argumentAllen Byrne2018-09-181-2/+2
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* | Second batch of checkin:Vailin Choi2018-09-041-2/+2
|/ | | | | | | | 1) Define driver for the VFD SWMR reader 2) Implement VFD SWMR open callback 3) Implement H5FD_vfd_swmr_get_tick_and_idx() 4) Load and decode metadata file header and index 4) Closing for VFD SWMR
* Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-1/+1
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* Revert some tangential code cleanups.Quincey Koziol2018-03-231-1/+1
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-3/+4
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* Added H5Oint.c file.Dana Robinson2017-11-141-1/+1
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* Split internal H5R functionality into H5Rint.c.Dana Robinson2017-11-081-1/+1
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* Major rework of H5PL package code before bringing VOL changesDana Robinson2017-07-141-1/+1
| | | | | | | | over. Brings coding standards in line with the rest of the library, enforces better software engineering principles, and makes everything more maintainable.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-1/+2
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* Cache image feature and testingQuincey Koziol2017-01-291-2/+4
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-5/+7
| | | | and the tool and API wrappers will be coming in over the weekend.
* Bring cache logging routines from revise_chunks branch to develop.Quincey Koziol2016-11-041-2/+2
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* Move cache debugging routines into separate module.Quincey Koziol2016-11-031-2/+2
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* [svn-r30068] Description:Quincey Koziol2016-06-131-1/+1
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30035] Description:Quincey Koziol2016-06-061-1/+1
| | | | | | | | Extract tagging routines into separate source module. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30033] Description:Quincey Koziol2016-06-061-1/+1
| | | | | | | | Extract epoch marker metadata client into separate source file. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29985] Description:Quincey Koziol2016-05-301-1/+1
| | | | | | | | Extract query routines into separate source module. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r29850] Description:Quincey Koziol2016-05-011-1/+1
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29770] Description:Quincey Koziol2016-04-231-1/+1
| | | | | | | | Bring 'none' chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29738] Description:Quincey Koziol2016-04-191-1/+2
| | | | | | | | Bring "single" chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-071-1/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
* [svn-r29635] Description:Quincey Koziol2016-04-051-4/+6
| | | | | | | | | Bring support for earray and v2 B-trees from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29548] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-241-1/+1
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r28616] Normalization of H5HL package with revise_chunks.Dana Robinson2015-12-141-1/+1
| | | | | | | | | NOTE: Flush dependency code was not moved. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 w/ CMake 3.3.2 serial only (Autotools and CMake since new files were added) (these changes have been in revise_chunks for a long time)
* [svn-r27835] Description:Quincey Koziol2015-09-211-9/+18
|\ | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r27812] Updated the autotools files to only compile direct VFD and ↵Dana Robinson2015-09-161-6/+15
| | | | | | | | | | | | | | | | parallel code when those options were specified in the configure step. Tested on: jam w/ serial, parallel, and direct VFD
| * [svn-r27768] Description:Quincey Koziol2015-09-141-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27397] Merge revisions 27255 through 27393 from trunk to vds branch.Neil Fortner2015-07-151-2/+4
|\ \ | |/ | | | | Tested: ummon
| * [svn-r27293] Description:Quincey Koziol2015-06-271-2/+4
| | | | | | | | | | | | | | | | Split parallel metadata cache code into separate source code modules. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (too minor for h5committest)
* | [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch.Neil Fortner2015-04-101-1/+1
|\ \ | |/ | | | | Tested: ummon
| * [svn-r26365] HDFFV-8520: Add plugin control APIs.Allen Byrne2015-03-051-1/+1
| | | | | | | | | | | | Update windows WiX packaging. h5committested
* | [svn-r26153] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-101-1/+1
|/ | | | Commit progress through 2/10/15 at 1500 CST
* [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-1/+1
| | | | tested with h5committest.
* [svn-r24864] Description:Quincey Koziol2014-03-211-3/+4
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward ↵Mohamad Chaarawi2014-02-131-1/+1
| | | | | | | | | | | | project for view objects. The addition of view objects in the fastforward project is expected to be brough into the trunk sometimes in the future, which is why we need to make this change. Tested Manually on Jam and Ostrich. Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes. error on Koala: error while loading shared libraries: libirng.so
* [svn-r24171] Purpose: Fix problem with gcc 4.8Neil Fortner2013-09-191-1/+0
| | | | | | | | | | | | | | Description: With optimization enabled, gcc 4.8 inserts garbage into the padding bytes of floating point types when assigning from a literal constant. This caused problems when H5detect.c scanned the bits in floating point types to determine their properties. Modified H5detect.c to scan for padding before further analyzing the type, and to ignore all information in the padding areas. Also removed code that temporarily disabled optimization. Tested: jam, koala, ostrich, platypus (h5committest)
* [svn-r24103] Force NO optimization of H5detect.cAllen Byrne2013-09-061-1/+1
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* [svn-r24087] Rename the private H5RC (reference count) module to H5UC (Use ↵Mohamad Chaarawi2013-08-301-1/+1
| | | | | | | | | | | | Count). This is needed to avoid a conflict with the Read Context object to be introduced in another Project. No impact on users, since this is a private module, and low for developers as the RC module use is very sparse in the library. Tested with h5committest.
* [svn-r23549] Description:Quincey Koziol2013-04-041-1/+1
| | | | | | | | More misc. cleanups, but main change is to make an "extern" header file for the plugin interface. Tested on: Mac OSX/64 10.8.3 (amazon)
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