| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
| |
Description: Fix the codes of last checkin(Bug #341). Some failures happened
in daily test from last checkin. Try to fix them in this checkin.
Platforms tested: modi4, mir, and tg-login2.
|
|
|
|
|
|
|
|
|
| |
Description: The hard conversion functions of "long double" and other floating
point types were left out for registration somehow.
Solution: Added them in.
Platforms tested: h5committest and fuss.
|
|
|
|
|
|
|
|
|
|
|
| |
Description: PGCC compiler on mir(AMD Opeteron) has a bug for optimization,
causing the multi driver test to fail. The compiler handles a macro in this
file incorrectly.
Solution: Slightly change the definition of this macro to avoid the problem
temporarily.
Platforms tested: h5committest, optimization and debug on mir.
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: After recent fix of family driver bug(#213), some failure
was discovered on sol and kelgia in daily test. Family files can't be
opened by hdf5/tools/misc/repart_test.c. It turned out to be the
destination size of "off_t" type wasn't passed in through H5Pset()
correctly.
Solution: In tools/misc/h5repart.c, copy the destination size to a
variable of "hsize_t" type and pass in to H5Pset().
Platforms tested: sol and kelgia where the failure was discovered.
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Fix several NULL pointer dereferences when tracking the name of open
objects during some unusual sequences of mount & unmount operations.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix.
Description:
The check-s and check-p targets are not recursively passes down.
Make them so.
Platforms tested:
heping (serial and pp).
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Re-enable free-list management in the library
Platforms tested:
None - eyeballed - too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix
Description:
check-s and check-p were set as pre-requistics of test. They
would get executed in parallel if parallel make is used. This
could cause problems since serial tests are used to be executed
before parallel tests. It is not known if it is always okay to
run serial and parallel tests in simultantously.
Solution:
Change check-s and check-p as actions of the target test so
that they get executed sequnentially.
Platforms tested:
heping PP.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: See details from Bug #213. Family member file size wasn't saved
anywhere in file. When family file is opened, the first member size determine
the member size.
Solution: This is the fourth step of checkin. A test suit is added for h5repart,
including a program to generate the test files, a script file to run h5repart,
and a program to verify repartitioned files can be opened by the library.
There's a change from the first step of checkin. Family name template is no
longer saved in the superblock because different pathname can make the name
different.
In the third step of checkin, h5repart has been modified. If h5repart is used
to change the size of family member file, the new size(actual member size) is saved
in the superblock.
In the second step of checkin, multi driver is checked against the driver
name saved in superblock. Wrong driver will result in a failure with an error message indicating
multi driver should be used. This change includes split driver because it's a special case for multi
driver.
In the first step of checkin. Family member size and name template(unused at this stage) are saved
in file superblock. When file is reopened,the size passed in thrin superblock. A different size
will trigger a failure with an error message indicating the right size. Wrong driver to open family
file will cause a failure, too.
Platforms tested: h5committest and fuss.
Misc. update: MANIFEST
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Simplify the "zero-sized hyperslab" handling.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
A few more cosmetic changes
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Merge in some mostly cosmetic improvements to the H5F routines.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
Added check-s and check-p targets.
Description:
Added check-s and check-p targets to 1.7 branch to match changes to 1.6
branch. Now parallel and serial tests can be run separately.
Platforms tested:
mir, modi4, copper
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix/new feature
Description:
Setting "SEMI" or "STRONG" file close degrees causes problems when multiple
file IDs exist for the same file on disk.
Solution:
Make the "SEMI" and "STRONG" settings only apply to the file ID that is
being closed.
Also, add an "H5F_OBJ_LOCAL" flag for the H5Fget_obj_count() &
H5Fget_obj_ids() calls, so that applications can query about objects opened
with a particular file ID instead of all the objects opened in the file on
disk.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Fix problems with hyperslab operations with hyperslabs that have count == 0
or block == 0 values. (bugzilla #294)
Solution:
Detect zero sized selections and translate into appropriate action on the
current hyperslab, rather than go through the formality of generating span
trees with zero-sized spans, etc.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/parallel
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: See details from Bug #213. Family member file size wasn't saved
anywhere in file. When family file is opened, the first member size determine
the member size.
Solution: This is the third step of checkin. h5repart has been modified. If h5repart is used
to change the size of family member file, the new size(actual member size) is saved in the superblock.
In the second step of checkin, multi driver is checked against the driver
name saved in superblock. Wrong driver will result in a failure with an error message indicating
multi driver should be used. This change includes split driver because it's a special case for multi
driver.
In the first step of checkin. Family member size and name template(unused at this stage) are saved
in file superblock. When file is reopened,the size passed in thrin superblock. A different size
will trigger a failure with an error message indicating the right size. Wrong driver to open family
file will cause a failure, too.
Platforms tested: h5committest and fuss
Misc. update: RELEASE.txt
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Feature
Description:
Added "support" for UTF-8 character encoding.
Solution:
Wrote tests to check that UTF-8 can be used in a number of places in
HDF5 (object names, data, etc.). These tests live in test/tunicode.c.
Added a new UTF-8 character encoding for datatypes.
Platforms tested:
mir, modi4, heping
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description:
Description: See details from Bug #213. Family member file size wasn't saved
anywhere in file. When family file is opened, the first member size determine
the member size.
Solution: This is the second step of fixing this bug. Multi driver is checked against the driver
name saved in superblock. Wrong driver will result in a failure with an error message indicating
multi driver should be used. This change includes split driver because it's a special case for multi
driver.
In the first step of checkin. Family member size and name template(unused at this stage) are saved
in file superblock. When file is reopened,the size passed in thrin superblock. A different size
will trigger a failure with an error message indicating the right size. Wrong driver to open family
file will cause a failure, too.
The third step will be changing h5repart to let it change family member size in the superblock if
user uses it to change member file size.
Platforms tested: h5committest and fuss.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Description: See details from Bug #213. Family member file size wasn't saved
anywhere in file. When family file is opened, the first member size determine
the member size.
Solution: This is the first step of fixing this bug. Member size and name
template(unused at this stage) are saved in file superblock. When file is reopened,
the size passed in through H5Pset_fapl_family is checked against the size saved
in superblock. A different size will trigger a failure with an error message
indicating the right size. Wrong driver to open family file will cause a failure,
too.
The second step will change multi driver that wrong driver will cause a failure.
Platforms tested: fuss and h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Output tweak
Description:
In configure.in, users must link to zlib library, but configure then
informs them that "deflate" filter is enabled. Changed output slightly
to indicate that these are the same filter.
Platforms tested:
mir (very minor change)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
New feature.
Description:
Add "memory pool" internal data structure. This set of routines is
designed to add a way to allocate small pieces of information for a particular
purpose and then free all the pieces at once (i.e. without having to free each
piece individually). Memory pools are also good for localizing lots of small
allocations that logically belong together.
For example, if you were constructing a temporary linked list, you could
create a new memory pool, allocate all the nodes for the list from the memory
pool and when you were done with the list, just destroy the pool instead of
tracking through the list and freeing each block independently.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Convert H5Eget_num from 'size_t' to 'ssize_t' to allow for correct error
reporting (eventually).
Also, convert a bunch of static routines from "FUNC_ENTER_NOAPI" to
"FUNC_ENTER_NOAPI_NOINIT" or "FUNC_ENTER_NOAPI_NOINIT_NOFUNC"
Platforms tested:
FreeBSD 4.11 (sleipnir) w/pthreads
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
| |
Description: H5Eget_num used to return an INT type. That's not consistent with
the parameter of H5Epop.
Solution: Changed it to SIZE_T type.
Platforms tested: fuss - very simple change.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
A little enhancement for integer datatype filter
Description:
Minimum-bit of the scaleoffset filter should not be less than 0,
However, if the user accidently input a negative value for integer type,
we will reset it to zero.
Solution:
Platforms tested:
too minor to test.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Minor change for rounding of floating-point value for scaleoffset filter.
Description:
Always round to the bigger absolute integer value if floating-point data is in the middle.
0.5->1, -0.5->-1.
Solution:
Platforms tested:
Too minor to test
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Add missing #ifdef's to recent code cleanup that fix daily test failures.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Clean up some compiler warnings
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Fix several problems with mounting files on an entry in a group when the
file the group is in has been closed.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Update H5Zscaleoffset.c so that it supports negative precision number.
Description:
Solution:
Platforms tested:
Linux 2.4
Misc. update:
too minor to check in other platforms
|
|
|
|
|
|
|
|
|
| |
Description: A user reported conversion of floating-point numbers returned some wrong value. It turned
out a variable in H5T_conv_f_f() wasn't reset after being used for each element. See bug #356 for details.
Solution: Simple reset it.
Platforms tested: fuss; also tested with the program user provided. Very simple change.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Portability feature
Description:
The random() and srandom() functions are not available on all machines.
Set up the configure script to automatically detect them, rather than
requiring their presence or absence to be hardcoded.
Solution:
Added AC_CHECK_FUNCS macro to configure.in and replaced
#ifdef WIN32 conditionals with #ifdef H5_HAVE_RANDOM conditionals.
Platforms tested:
sleipnir, Windows
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Clean up some compiler warnings.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/gcc 4.0
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Remove C99 types from new metadata cache related API calls
(take 2 -- missed one in the previous check in)
Description:
Windows (and perhaps others) don't like int32_t and int64_t. While
we have dealt with the issue internally, it is more of a problem
in API calls.
Solution:
Convert int32_t to int and int64_t to long int in the new metadata
cache related API calls.
Platforms tested:
heping
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Migrate MPE macros to H5private.h, in preparation for using the
H5MPprivate.h file for "memory pool" API.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/parallel
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Remove C99 types from new metadata cache related API calls
Description:
Windows (and perhaps others) don't like int32_t and int64_t. While
we have dealt with the issue internally, it is more of a problem
in API calls.
Solution:
Convert int32_t to int and int64_t to long int in the
H5AC_cache_config_t structure used by the new metadata cache
related API calls. Added explicit type casts to convert
between internal and external representations.
Platforms tested:
h5committested
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
bug fix, the wrong setting at H5public.h causes library failed to be compiled on windows.
Description:
"long long" needs to be changed to long_long since "long long" can not be recongized on windows.
Solution:
Platforms tested:
MSVS 6.0 on windows XP
Linux 2.4 on heping
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Clean up a few compiler warnings of various sorts...
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Correct bug where buffers that have only fractional elements (usually from
being compressed before being shuffled) would cause optimized algorithm to
dump core.
Solution:
Don't attempt to shuffle bytes unless we've got more than one element.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix.
Description:
The previous bug fix of H5Zscaleoffset filter was not secure enough.
Solution:
Slight modification based on previous version.
Platforms tested:
heping
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Purpose:
Bug fix
Description:
Some platforms (Windows) don't have the long long type, which causes automatic
Fortran type matching to fail.
A solution is to use HDF5's long_long type.
Solution:
Changed H5match_types.c to use long_long type. Moved definition
of long_long out of H5private.h and into H5public.h.
Platforms tested:
mir, copper, pommier
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
Kent reminded me that switching the logic wasn't enough, we really needed
to add the definition to the configure script.
Solution:
Do that.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
| |
Code cleanup
Description:
Switch name & logic from H5_LLONG_TO_FP_CAST_BROKEN to
H5_LLONG_TO_FP_CAST_WORKS, to better match the rest of the library.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix.
Description:
The scaleoffset filter checks the uppper limmit of span of values
before it is assigned. The check for floating-point data, which may
not be represented in the machine exactly as the user wanted, did
not consider this.
Solution:
Slight modification of check above.
Platforms tested:
heping
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix
Description:
On visual studio 6.0, conversion from unsigned long long to double is not supported.
Even during compilation stage, it will fail.
Solution:
Albert changed the way the macro is handled so that for windowx MSVS 6.0,
the code that has conversion from unsigned long long to double will not compile.
Platforms tested:
windows, linux
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add API calls allowing user control of the metadata cache.
Description:
Prior to this update, the metadata cache was not configurable
from outside the library.
Solution:
Add API calls allowing the user to configure the metadata cache
either at file open time, or for any open file. Also added calls
permitting the user to monitor cache size and hit rate. These
latter facilities are needed for "manual" cache size control
Platforms tested:
h5committested
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Modifications.
Description:
Scaleoffset filter codes could not pass windows compiler.
Solution:
Modifications were made to make it pass. Also slight improvements of codes.
Platforms tested:
heping
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Slight modification.
Description:
Several constants were added for the scaleoffset filter in
file H5Zpublic.h and corresponding changes needs to be made
in H5Zscaleoffset.c.
Solution:
Slight modification of codes.
Platforms tested:
heping, shanti
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add some comments for H5Pset_scaleoffset.
Description:
Solution:
Platforms tested:
No need to test.
Misc. update:
|
|
|
|
|
|
|
|
|
|
|
|
| |
Add a few constants for the scaleoffset filter.
Description:
Solution:
Platforms tested:
Misc. update:
|