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* Merge pull request #1901 in HDFFV/hdf5 from ↵Vailin Choi2019-08-271-1/+1
|\ | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/110_HDFFV-10873-assertion-v-oh--nmesgs-failed to hdf5_1_10 * commit '9c3e331ba31fdaea98354a05554beb8bdcd2e6fc': Merge pull request #1892 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10873-assertion-v-oh--nmesgs-failed to develop
| * Merge pull request #1892 in HDFFV/hdf5 from ↵Vailin Choi2019-08-261-1/+1
| | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10873-assertion-v-oh--nmesgs-failed to develop * commit '021919206df7764f951037ae76ccae006b2eea99': Fixed the assertion failure for HDFFV-10873.
* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-08-261-2/+2
|\ \ | |/ | | | | | | * commit '4a3a12c4ba968b0b3781f5b69e3a2c41a3ed74ca': Snapshot version 1.10 release 6 (snap1) Update version to 1.10.6-snap2
| * Snapshot version 1.10 release 6 (snap1)hdftest2019-08-261-2/+2
| | | | | | | | Update version to 1.10.6-snap2
* | OESS-29 Update HD prefix and compare against developAllen Byrne2019-08-2329-5746/+5757
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* Merge pull request #1865 in HDFFV/hdf5 from ↵Vailin Choi2019-08-161-2/+4
| | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10813-swmr-test-fails-on-jelly-with to develop * commit '538f743c145fbbfa7b1119693efd2ff61b34efae': Changes based on PR feedback. Fix for HDFFV-10813 H5Fset_metadata_read_retry_info() test fails on jelly with PGI/19.
* Added ifdef for intel compilers, __GNUC__ has to be defined for header files ↵M. Scot Breitenfeld2019-08-141-1/+1
| | | | which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers.
* Added gcc conditional for __attribute__((fallthrough)), removes 34 warnings ↵M. Scot Breitenfeld2019-08-091-0/+5
| | | | on theta (10% of warnings).
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-07-315-6/+85
|\ | | | | | | | | | | * commit '803ae1d1a87bb962a7d887a958bbd9ac8adf3da3': Changes based on PR review. Bring pull request #1772 from develop to 1.10. Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110.
| * Merge pull request #15 in ~VCHOI/my_third_fork from hdf5_1_10 to ↵Vailin Choi2019-07-316-33/+208
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | bugfix/110_HDFFV-10808-h5pset_file_space_strategy * commit '3049d2c140b06d5b2b419562c3d4d1d1c66612e3': A minor bug fix. Updated the command for external_env and vds_env to the most recent changes. 1. Updated the commands for compiling two new tests (external_env.c and vds_env.c). 2. Changed the data file names for external.c and external_env.c to avoid potential name conflict. HDFFV-10658: setting and getting properties in API context. Porting the changes to the develop branch into the 1.10 branch: mainly the external file prefix and VDS prefix.
| * | Changes based on PR review.Vailin Choi2019-07-311-1/+1
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| * | Bring pull request #1772 from develop to 1.10.Vailin Choi2019-07-225-6/+85
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110. Merge pull request #1772 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10808-h5pset_file_space_strategy-succeeds to develop * commit '3768566139df18928aa29ece0eff3010b224633b': Add release notes. Correct hid_t error value to H5I_INVALID_HID in tests related to libver_bounds. Fix for HDFFV-10808 H5Pset_file_space_strategy succeeds when using H5Pset_libver_bounds v18,v18. Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110. Conflicts: test/tfile.c
* | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-07-295-30/+205
|\ \ \ | | |/ | |/| | | | | | | | | | | | | * commit 'b20ffd84e3572cd506bf1f696431892258e9ab3b': Updated the command for external_env and vds_env to the most recent changes. 1. Updated the commands for compiling two new tests (external_env.c and vds_env.c). 2. Changed the data file names for external.c and external_env.c to avoid potential name conflict. HDFFV-10658: setting and getting properties in API context. Porting the changes to the develop branch into the 1.10 branch: mainly the external file prefix and VDS prefix.
| * | HDFFV-10658: setting and getting properties in API context. Porting the ↵Songyu Lu2019-07-266-33/+208
| |/ | | | | | | changes to the develop branch into the 1.10 branch: mainly the external file prefix and VDS prefix.
* | HDFFV-10845, 10529 and CMake changes from developAllen Byrne2019-07-244-50/+204
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-07-231-1/+1
|\ \ | |/ | | | | | | | | * commit '308393a020bd7a812c231eee8130c9365d192e18': Change "bad" hid_t_value to H5I_INVALID_HID in test_libver_bounds_copy() test. Bring pull request #1729 from develop to 1.10: Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
| * Bring pull request #1729 from develop to 1.10:Vailin Choi2019-07-171-1/+1
| | | | | | | | | | | | Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
* | Merge from develop, mostly HDFFV-10845Allen Byrne2019-07-121-2/+2
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* HDFFV-10581 Correct PDB files and debug naming.Allen Byrne2019-07-091-1/+1
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* Minor fix in libhdf5.settings.inDhvanil Popat2019-06-251-1/+1
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* Squash commit of options to build tools and testsDhvanil Popat2019-06-252-1/+11
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* HDFFV-10805 Merge SHARED ONLY option from developAllen Byrne2019-06-201-35/+46
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* Address daily test failure for hdf5_1_10:Vailin Choi2019-05-164-7/+7
| | | | Fix the testhdf5 failing test in the selection code which segfaults.
* Merge pull request #4 in ~VCHOI/my_third_fork from hdf5_1_10 to ↵Vailin Choi2019-05-131-0/+30
|\ | | | | | | | | | | | | | | | | bugfix/v110_HDFFV-10365-h5sencode-decode-bug-when-num * commit '4dfcc225ba98a5ad1bc4283b8eacde0bb6f7484c': Fix Java JUnit-TestH5P failure on 32-bit arch Added new C++ wrappers - HDFFV-10622 Make the corresponding fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked.
| * Make the corresponding fix for HDFFV-10579 H5Arename fails when creation ↵Vailin Choi2019-04-181-0/+30
| | | | | | | | order of attributes is tracked.
* | Make corresponding changes for H5Sencode based on PR #1645 to develop branch.Vailin Choi2019-04-2327-523/+360
|/ | | | The core changes are to revert previous modifications now that we use API context for fapl.
* Merge pull request #1648 in HDFFV/hdf5 from ↵Vailin Choi2019-04-186-120/+195
|\ | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/v110_move_selection_specific to hdf5_1_10 * commit '670c6c1389c1c66598a365a9bfe2b19237d9e93a': Make corresponding changes for moving dataspace selection-specific coding to the callbacks. This is based on the PR #1642 merged to the develop branch.
| * Make corresponding changes for moving dataspace selection-specific coding to ↵Vailin Choi2019-04-106-120/+195
| | | | | | | | | | | | the callbacks. This is based on the PR #1642 merged to the develop branch.
* | Make corresponding changes for setting API context for fapl and ↵Vailin Choi2019-04-102-0/+124
|/ | | | | | libver_bounds to be used later in dataspace selection. This is based on PR #1640 merged to develop branch.
* Snapshot version 1.10 release 6 (snap0)\nUpdate version to 1.10.6-snap1)hdftest2019-04-011-2/+2
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* Fix issue with direct chunk write not updating the "last chunk" indexNeil Fortner2019-03-199-9/+130
| | | | | cache. Fix issues involving datasets being "no allocated" when they contain cached raw data.
* HDFFV-10705: Fixed memory leak in scale offset filter.Songyu Lu2019-03-041-0/+5
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* Merge pull request #1575 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-02-234-1/+352
|\ | | | | | | | | | | | | | | hdf5_1_10 * commit '675be2a4a48253ed2622b9c45f8beabaa872c18d': HDFFV-10552 Change to use H5G_loc_info HDFFV-10552 Revert H5O_*1 functions for compatibility
| * HDFFV-10552 Change to use H5G_loc_infoAllen Byrne2019-02-221-3/+3
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| * HDFFV-10552 Revert H5O_*1 functions for compatibilityAllen Byrne2019-02-224-1/+352
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* | Updated H5err.txt to replace a global variable that was removedDana Robinson2019-02-221-0/+1
|/ | | | | during the metadata cache logging changes (to maintain binary compatibility).
* Update version on hdf5_1_10 branch to 1.10.6-snap0.Larry Knox2019-02-181-3/+3
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* Merge pull request #1543 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-02-141-0/+6
|\ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'f4f8be19125002764715f6cd25372477c729f809': Script changes from develop Added TRILABS-111 note Add HDFFV-10628 known problem TRILAB-111 Update MPI CMake
| * Script changes from developAllen Byrne2019-02-141-1/+1
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| * TRILAB-111 Update MPI CMakeAllen Byrne2019-02-131-0/+6
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* | Re-write of Java JNI error handlingJordan Henderson2019-02-141-2/+2
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* Merge pull request #1536 in HDFFV/hdf5 from ~JHENDERSON/hdf5:hdf5_1_10 to ↵Jordan Henderson2019-02-126-64/+29
|\ | | | | | | | | | | | | | | hdf5_1_10 * commit '2e44998a70924b77f186f6cb60924035fd24441d': Add RELEASE.txt note for collective metadata read fixes Fix some collective metadata read issues
| * Fix some collective metadata read issuesJordan Henderson2019-02-126-64/+29
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* | I'm bringing the fixes for the following Jira issues from the develop branch ↵Songyu Lu2019-02-126-18/+31
|/ | | | | | | | | to 1.10 branch: HDFFV-10571: Divided by Zero vulnerability. HDFFV-10601: Issues with chunk cache hash value calcuation. HDFFV-10607: Patches for warnings in the core libraries. HDFFV-10635: HDF5 library segmentation fault with H5Sselect_element.
* Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-02-065-2/+51
| | | | | | | | | | | | | develop * commit '7f5741825db0737db5ac46c43009681508a73002': Add release notes information. Modification based on feedback from pull request. Modification based on feedback from pull request. There is performance issue when closing an object. The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1) Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects. Conflicts: release_docs/RELEASE.txt
* Merge of changes from develop for 1.10.5.Dana Robinson2019-02-0410-40/+92
| | | | Added RELEASE.txt entries for new features.
* Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-316-516/+437
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-01-282-2/+3
| |\ | | | | | | | | | | | | * commit '611ecb5db4051cbf762cc24944ee75ea5284c5d2': Fixed HDFFV-10578
| | * Merge pull request #1480 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-282-2/+3
| | |\ | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10 * commit '2880ef43eb03526e7d75551720547b85e66a3086': Fixed HDFFV-10578
| * | | Remove Not_yet_versioned filesAllen Byrne2019-01-281-5/+0
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