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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~koziol/hdf5 ↵Quincey Koziol2016-12-0120-73/+71
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| * Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-2916-367/+549
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| * \ Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-281-12/+27
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| * \ \ Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-285-152/+131
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| * \ \ \ Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-2634-1453/+2883
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| * | | | | Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-2620-73/+71
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
| * | | | | Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-2117-1059/+350
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* | | | | | | Minor normalization cleanups.Quincey Koziol2016-11-302-4/+4
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* | | | | | Bring over another batch (hopefully the last) of non-SWMR "normalization"Quincey Koziol2016-11-2916-367/+549
| |_|_|_|/ |/| | | | | | | | | | | | | | changes from the revise_chunks branch.
* | | | | Merge pull request #175 in HDFFV/hdf5 from ↵Dana Robinson2016-11-281-12/+27
|\ \ \ \ \ | |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:new_H5AC_dump_cache to develop Updated H5AC_dump_cache() to emit more information. * commit '7a8c7c6063e328fdac28aa3f77ead4bdc91860e5': Updated the cache dump to use the stored type name instead of the (redundant) array of names I previously created. Updated the format of H5AC/C_dump_cache() to include more information and be easier to read.
| * | | | Updated the cache dump to use the stored type name insteadDana Robinson2016-11-282-43/+5
| | | | | | | | | | | | | | | | | | | | of the (redundant) array of names I previously created.
| * | | | Updated the format of H5AC/C_dump_cache() to includeDana Robinson2016-11-282-13/+66
| | | | | | | | | | | | | | | | | | | | more information and be easier to read.
* | | | | Remove "collective write list" parameter from H5C__flush_single_entry() as itQuincey Koziol2016-11-284-50/+60
| | | | | | | | | | | | | | | | | | | | | | | | | is only used in a couple of places. The collective write list has been moved to be internal to the cache data structure instead.
* | | | | Eliminate unnecessary data structure for parallel collective metadata cache I/OQuincey Koziol2016-11-283-70/+11
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* | | | Add a flag for H5C__flush_single_entry() to allow the parallel code to requestQuincey Koziol2016-11-253-37/+65
| |_|/ |/| | | | | | | | | | | that images for entries be generated, even when not writing the entry from an MPI rank.
* | | Merge pull request #167 in HDFFV/hdf5 from ↵Dana Robinson2016-11-221-1/+1
|\ \ \ | |/ / | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:eoc_valgrind_bugfix to develop Applied the evict-on-close "check for file closing" change that was successful for groups to datasets. * commit '88b6f2e24cafcfaffe7d99ab6c5afc2290ce93b4': Added the H5F_CLOSING() check that makes valgrind happy in the evict-on-close code in H5G_close() to H5D_close().
| * | Added the H5F_CLOSING() check that makes valgrind happy inDana Robinson2016-11-211-1/+1
| | | | | | | | | | | | the evict-on-close code in H5G_close() to H5D_close().
* | | Merge pull request #166 in HDFFV/hdf5 from ↵Dana Robinson2016-11-214-4/+34
|\ \ \ | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:eoc_valgrind_bugfix to develop Two minor evict-on-close changes: * Fix for a valgrind-reported issue where invoking EoC behavior when the file is closing leads to garbage file data being passed to downstream calls. The solution is to ignore EoC when the file is closing anyway. * Added brackets so an infinite loop that arises when evicting tagged entries (due to pinned entries preventing progress) raises an error instead. * commit '4e7b19f8260a7adb0e3b3df30e2d8289fccdcca6': Two minor cache changes:
| * | Two minor cache changes:Dana Robinson2016-11-204-4/+34
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Evict-on-close behavior is now skipped when the file is closing. This fixes a potential issue discovered by Valgind on Windows where potentially garbage data would be availble for manipulation. * Added brackets to some code in the tagged entry evict iterators so that the flag that determines if progress was made only gets set if things are actually evicted. This prevents an infinite loop (and emits an error) when pinned entries prevent eviction and thus progress.
* | | Bring over support for retrying metadata cache entry loads, along with all theQuincey Koziol2016-11-2034-1453/+2883
| |/ |/| | | | | supporting metadata cache callback changes, etc.
* | Remove 'clear' callback from metadata cache client interface, using theQuincey Koziol2016-11-1817-268/+139
| | | | | | | | new 'entry cleaned' notify action innstead.
* | Remove explicit support within the metadata cache for tracked compressedQuincey Koziol2016-11-1717-791/+211
|/ | | | entries, they are now completely handled in the clients.
* Bring over new 'notify' metadata cache client callback actions for when anQuincey Koziol2016-11-125-30/+134
| | | | | entry is cleaned / dirtied or its [flush dependency] child entry is cleaned / dirtied.
* Merge pull request #155 in HDFFV/hdf5 from ↵Quincey Koziol2016-11-126-675/+727
|\ | | | | | | | | | | | | ~KOZIOL/hdf5:develop_merge_revise_chunks_05 to develop * commit '1c6924f18bd8fdad63c4f191c00605092c17fa6e': Refactor H5O code to clean up message allocation, align cache deserialize code with revise_chunks changes, and remove unused "message locking" code.
| * Refactor H5O code to clean up message allocation, align cache deserialize codeQuincey Koziol2016-11-126-675/+727
| | | | | | | | with revise_chunks changes, and remove unused "message locking" code.
* | Align w/minor cleanups in revise_chunks branch.Quincey Koziol2016-11-124-45/+79
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* Merge pull request #151 in HDFFV/hdf5 from ~KOZIOL/hdf5:develop to developQuincey Koziol2016-11-115-405/+213
|\ | | | | | | | | * commit '31ffc1e72687b4d27602a044565bde6b1e9d803f': Clean up cache code to eliminate dead-ends and unify code.
| * Clean up cache code to eliminate dead-ends and unify code.Quincey Koziol2016-11-105-405/+213
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* | Moved Win32 variables to top of function in H5FDlog.c.derobins2016-11-111-8/+9
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* Merge pull request #138 in HDFFV/hdf5 from ↵Dana Robinson2016-11-073-9/+9
|\ | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:H5Pget_driver_info_retval to develop Changed the return type of H5Pget_driver_info() from void * to const void * * commit '8eaa0af30585adbbab29686541cd33e058abd6e8': Changed the return type of H5Pget_driver_info() from void * to const void *. Fixes HDFFV-10017.
| * Changed the return type of H5Pget_driver_info() from void * toDana Robinson2016-11-053-9/+9
| | | | | | | | const void *. Fixes HDFFV-10017.
* | Switch to new, more scalable, metadata cache entry tagging.Quincey Koziol2016-11-0713-325/+381
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* | Remove routines not yet used in developQuincey Koziol2016-11-071-140/+0
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* | Code style and warning cleanups, from revise_chunks branch.Quincey Koziol2016-11-0629-543/+295
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* Add missing retrieval of cache logging name, from revise_chunks.Quincey Koziol2016-11-041-0/+16
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* Add public H5F* routines for cache logging.Quincey Koziol2016-11-041-0/+99
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* Add cache logging property and file pieces.Quincey Koziol2016-11-047-10/+475
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* Add logging prototypes and cache struct fields.Quincey Koziol2016-11-042-0/+33
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* Add logging error message.Quincey Koziol2016-11-041-0/+1
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* Bring cache logging routines from revise_chunks branch to develop.Quincey Koziol2016-11-048-6/+1651
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* Remove static definition for debugging routines. *sigh*Quincey Koziol2016-11-041-2/+0
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* Add missing prototypes for cache debugging routines.Quincey Koziol2016-11-042-1/+6
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* Merge pull request #123 in HDFFV/hdf5 from ~KOZIOL/hdf5:develop to developQuincey Koziol2016-11-0314-1166/+1416
|\ | | | | | | | | | | | | | | | | | | * commit 'b2878dec04c120e4e3cdf00e943283e359862c84': Move cache debugging routines into separate module. Change file memory type for extending to default, and correct error in backward compatibility for multi VFD. Warning and whitespace cleanup. Improvements to the log VFD, for helping with SWMR debugging. Minor code cleanups. Uncomment line in test/objcopy.c, clean up whitespace and POSIX call wrapping in tools code.
| * Move cache debugging routines into separate module.Quincey Koziol2016-11-036-1102/+1221
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| * Change file memory type for extending to default, and correct error inQuincey Koziol2016-11-032-4/+8
| | | | | | | | backward compatibility for multi VFD.
| * Warning and whitespace cleanup.Quincey Koziol2016-11-034-17/+43
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| * Improvements to the log VFD, for helping with SWMR debugging.Quincey Koziol2016-11-032-28/+137
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| * Minor code cleanups.Quincey Koziol2016-11-032-14/+6
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* | Merge pull request #122 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:eoc_groups to ↵Dana Robinson2016-11-031-0/+8
|\ \ | |/ |/| | | | | | | | | | | | | | | | | develop Merged EoC for groups. Will expand the tests as discussed in the code review at a later date. * commit '30f5f7d9f97e7e4e331894c3574cc1b6c4df6d9e': Removed commented-out lines that clean up test files. Added a test for old- and new-style groups under evict-on-close. Evict-on-close now works with groups.
| * Evict-on-close now works with groups.Dana Robinson2016-10-281-0/+8
| | | | | | | | | | test/evict_on_close.c has been updated to generate groups but does not yet check EoC works correctly.
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