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* Update version string on hdf5_1_8 development branch following creation of newlrknox2017-10-301-3/+3
| | | | hdf5_1_8_20 branch.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2017-10-191-2/+2
|\ | | | | | | | | | | | | | | * commit '9c8d0e1afce7d9d31115972902e9030a000daefa': Snapshot version 1.8 release 20 (snap7) Update about C++ documentation Adding new C++ wrappers Description: - Added overloaded wrappers for H5Oget_info and H5Oget_info_by_name // Retrieves information about an object void getObjectInfo(H5O_info_t *oinfo) const; void getObjectInfo(const char *name, H5O_info_t *oinfo, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; void getObjectInfo(const H5std_string& name, H5O_info_t *oinfo, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; - Many miscellaneous cleanup for consistent appearance Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test) Snapshot version 1.8 release 20 (snap7)
| * Snapshot version 1.8 release 20 (snap7)HDF Tester2017-10-161-2/+2
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* | HDFFV-10297 merge from developAllen Byrne2017-10-112-20/+10
|/ | | Also cleaned up some other non-merged changes
* Snapshot version 1.8 release 20 (snap6)HDF Tester2017-10-091-2/+2
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* Snapshot version 1.8 release 20 (snap5)HDF Tester2017-09-181-2/+2
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* Merge pull request #655 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_8 to ↵Vailin Choi2017-09-139-475/+520
|\ | | | | | | | | | | | | | | | | | | | | hdf5_1_8 * commit 'b15011a59af9e70eb06865234f8f0dacab34aa0f': Fix for HDFFV-9947 Fix to return error when encoding dataspace selection exceeds 32 bit integer limit. Add info for release notes Fix for daily test failure Fix for the compilation error from the PGI compiler. Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
| * Fix for HDFFV-9947Vailin Choi2017-09-073-19/+63
| | | | | | | | Fix to return error when encoding dataspace selection exceeds 32 bit integer limit.
| * Fix for daily test failureVailin Choi2017-09-061-1/+1
| | | | | | | | Fix for the compilation error from the PGI compiler.
| * Modifications based on comments from pull request reviewVailin Choi2017-09-064-47/+26
| | | | | | | | | | (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
| * Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 fileVailin Choi2017-09-066-418/+440
| | | | | | | | | | Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
* | Snapshot version 1.8 release 20 (snap4)HDF Tester2017-09-111-2/+2
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* Snapshot version 1.8 release 20 (snap3)HDF Tester2017-09-041-2/+2
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* Merge pull request #643 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_8 to hdf5_1_8Larry Knox2017-08-291-4/+2
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '7f758f2eea5c918a9100e6e7e6e0744a85e4c571': Commit changes to release version strings in README.txt and RELEASE.txt from release. Put back link targets for dynamically loaded libraries in Makefile.ams that avoid linking with libhdf5 dependencies. Some configurations failed unnecessarily to find and link with lz and lsz when these targets were removed. Update URL for obtaining source inINSTALL file. Disable building of libdynlib* dynamically loaded plugin test libraries on CYGWIN. Added known problem entry to RELEASE.txt. Set version for 1.8.19 release. Barbara updated contents of README.txt file. Moved libdynlib* plugin test libraries to noist_LT_LIBRARIES with added flag '-rpath /nowhere' to stop them being installed while keeping them from linking with libhdf5, etc. Incremented version to 1.8.19-pre1 and ran bin/release to create tar and zip files for testing. HDF5 1.8.19-pre1 released. Add RELEASE.txt entry for H5Dget_chunk_size. Remove test entries Ran bin/reconfigure after so number change. Update hl lib .so numbers: new function was added. Update RELEASE.txt: move H5DOread_chunks entry to new features, clarify entry for HDFFV-10051. Updated notes for test fixes and added bug fix for h5diff help text. Update h5vers and release scripts for 1.8.19 branch, set version to 1.8.19-pre1. Update version to 1.8.19-pre1.
| * Merge branch '1.8/master' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 ↵lrknox2017-08-251-4/+2
| |\ | | | | | | | | | into hdf5_1_8
| | * Disable building of libdynlib* dynamically loaded plugin test librarieslrknox2017-06-142-2/+3
| | | | | | | | | | | | | | | | | | | | | on CYGWIN. Added known problem entry to RELEASE.txt. Set version for 1.8.19 release. Barbara updated contents of README.txt file.
| | * Moved libdynlib* plugin test libraries to noist_LT_LIBRARIES with addedlrknox2017-06-122-6/+3
| | | | | | | | | | | | | | | | | | | | | flag '-rpath /nowhere' to stop them being installed while keeping them from linking with libhdf5, etc. Incremented version to 1.8.19-pre1 and ran bin/release to create tar and zip files for testing.
| | * Ran bin/reconfigure after so number change.lrknox2017-06-061-3/+3
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| | * Update version to 1.8.19-pre1.lrknox2017-06-021-2/+2
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* | | Snapshot version 1.8 release 20 (snap2)HDF Tester2017-08-281-2/+2
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* | Snapshot version 1.8 release 20 (snap1)HDF Tester2017-08-081-2/+2
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* | Merge branch 'hdf5_1_8' of ↵M. Scot Breitenfeld2017-08-041-2/+2
|\ \ | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into hdf5_1_8
| * | Snapshot version 1.8 release 20 (snap0)HDF Tester2017-08-011-2/+2
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* | | generated reconfigure files for configure changesM. Scot Breitenfeld2017-08-041-0/+1
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* | Fix for HDFFV-7853 H5Ocopy to 1.8 branchVailin Choi2017-07-116-36/+139
| | | | | | | | | | | | | | Apply the fix for HDFFV-7853 H5Ocopy from develop to 1.8 branch. This is the similar set of changes as in develop branch. Some coding is added to do the copying because 1.8 does not flush out the storage address when writing to a dataset.
* | Update h5vers and release scripts for 1.8.19 branch, set version tolrknox2017-06-082-6/+6
|/ | | | | | | | 1.8.19-pre1. Note: changes to these scripts were brought from develop/hdf5_1_10 and modified for 1.8 version differences. Update HDF5 version to 1.8.20-snap0. Update HL .so number for added API function.
* Propagate .so number changes to Makefile.ins with bin/reconfigure.lrknox2017-06-021-5/+5
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* Update text in COPYING files in subdirectories to match changes tolrknox2017-05-247-50/+24
| | | | | | | | | copyright notices in source files. Update Copyright notices in acsite.m4 and bin/yodconfigure that were overlooked by chkcopyright. Remove broken and unnecessary urls from comments in hl/fortran/src/H5IMcc.c and hl/src/H5IM.c. Commit bin/reconfigure changes to generated files.
* Merge branch 'hdf5_1_8' of ↵lrknox2017-05-201-1504/+1446
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_8
| * Tools merge from develop-1.10Allen Byrne2017-05-171-1510/+1450
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* | Merge branch 'hdf5_1_8' of ↵lrknox2017-05-164-4/+48
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_8
| * Merge pull request #513 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_8 to ↵Vailin Choi2017-05-163-2/+46
| |\ | | | | | | | | | | | | | | | | | | hdf5_1_8 * commit '839bbd544a8cf11184e0d8429778ebf45c522d10': Fix for HDFFV-10051 Fix for issue #2 reported in HDFFV-10051: The layout "dirty" flag for a compact dataset is not reset properly after flusing the data at dataset close. --Reset the "dirty" flag before flushing the message. Issue #1 reported in HDFFV-10051 is not a problem for 1.8.
| | * Fix for HDFFV-10051Vailin Choi2017-05-123-2/+46
| | | | | | | | | | | | | | | | | | | | | Fix for issue #2 reported in HDFFV-10051: The layout "dirty" flag for a compact dataset is not reset properly after flusing the data at dataset close. --Reset the "dirty" flag before flushing the message. Issue #1 reported in HDFFV-10051 is not a problem for 1.8.
| * | Increment snap version.hdftest2017-05-161-2/+2
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* | | Change copyright headers to replace url referring to file to belrknox2017-05-16354-2124/+1416
|/ / | | | | | | removed and replace it with new url for COPYING file.
* | Snapshot 1.8.19-snap3hdftest2017-05-151-2/+2
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* Change position of declaration to top of blockAllen Byrne2017-05-111-425/+426
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* Change the signature of H5PLget_size functionAllen Byrne2017-05-112-12/+20
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* Merge pull request #485 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_8 to ↵Vailin Choi2017-05-112-36/+41
|\ | | | | | | | | | | | | | | hdf5_1_8 * commit '8c2d4c354413d4f3578aa30cf28ee4c4f5c137cf': Incorporate additional code changes for the H5DOread_chunk patch from GE healthcare (HDFFV-9934) Modifications made based on pull request (#485) comments. Incorporate additional code changes for the H5DOread_chunk patch from GE healthcare (HDFFV-9934) Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on playtpus, ostrich, kituo, mayll, osx1010test, quail, emu.
| * Incorporate additional code changes for the H5DOread_chunk patch from GE ↵Vailin Choi2017-05-111-0/+3
| | | | | | | | | | | | healthcare (HDFFV-9934) Modifications made based on pull request (#485) comments.
| * Incorporate additional code changes for the H5DOread_chunk patch from GE ↵Vailin Choi2017-05-031-36/+38
| | | | | | | | | | | | | | | | | | healthcare (HDFFV-9934) Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on playtpus, ostrich, kituo, mayll, osx1010test, quail, emu.
* | Move libdynlib* test lib files from lib_LTLIBRARIES to dyn_LTLIBRARIESlrknox2017-05-101-2/+5
|/ | | | | | and other changes to Makefiles and config/conclude.am to eliminate link errors with new libdynlib*_la_LDFLAGS which were added to stop libdynlib* files linking to external libraries.
* Ran bin/reconfigure on jam after changes to make_err.Dana Robinson2017-04-261-0/+8
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* HDFFV-10170 fix reconfigureAllen Byrne2017-04-183-1/+13
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* Reformat char * argsAllen Byrne2017-04-181-4/+4
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2017-04-071-6/+5
|\ | | | | | | | | * commit '5c4aeef7ff5845a98f4fea5d2be74aa258cd1562': Fix illegal references for sanity checks. Correct illegal references for HDassert() checks when in debug mode. Tested on emu, osx1010test, mayll, kituo, ostrich.
| * Fix illegal references for sanity checks.Vailin Choi2017-04-061-6/+5
| | | | | | | | | | Correct illegal references for HDassert() checks when in debug mode. Tested on emu, osx1010test, mayll, kituo, ostrich.
* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2017-04-066-128/+473
|\ \ | |/ | | | | | | | | * commit '043aabe8cbd1abcc41ea2fb887b3a8ddd706500c': Made corrections according to code review. 1) Change fprintf to HDfprintf in hl/test/test_dset_opt.c 2) Remove extra line in src/H5Dpkg.h 3) Add one more test to hl/test/test_dset_opt.c Tested on mayll and osx1010test. Incorporate patch from GE Heathcare (HDFFV-9934) 1) Integrate the patch 2) Fix bugs when debugging the patch 3) Add test to hl/test/test_dset_opt.c Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
| * Made corrections according to code review.Vailin Choi2017-04-031-1/+0
| | | | | | | | | | | | | | 1) Change fprintf to HDfprintf in hl/test/test_dset_opt.c 2) Remove extra line in src/H5Dpkg.h 3) Add one more test to hl/test/test_dset_opt.c Tested on mayll and osx1010test.
| * Incorporate patch from GE Heathcare (HDFFV-9934)Vailin Choi2017-04-036-128/+474
| | | | | | | | | | | | | | 1) Integrate the patch 2) Fix bugs when debugging the patch 3) Add test to hl/test/test_dset_opt.c Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
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