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This reverts commit eb75dc1bb02e13902d73a36caafe763eea585d02.
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develop"
This reverts commit a7a8e6451a37d1bd072c7281b432f1436795daef, reversing
changes made to 30422a6b55a135ec406d484a6c66f995057e0a50.
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* commit 'ad9a2ceabe2dd9045111f8b57774948a124607b9':
Only initialize the contiguous or compact I/O info struct when needed.
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This reverts commit ba80bcaff24113f438da0f40cb5b5479d4a21cc6, reversing
changes made to 522ef0dd5ca1daa2b26c3fe4459ddbb1eaf6ec20.
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~BMRIBLER/hdf5_bmr2020:hdf5_bmr2020_addrsani to develop
* commit '5352b1dbc92313d91d3502dd8352352abe8749a7':
Fixed typo
Fix HDFFV-11101
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Description
Added initialization to local structs in the src function
H5MF_settle_raw_data_fsm() and the test function test_bt2_hdr_fd()
to prevent the following error in two different occurrences:
MemorySanitizer: use-of-uninitialized-value
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
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* commit 'a20bf599b682bfa0a91d571a922973e0c53b524a':
Don't track file offset position when using pread / pwrite.
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* commit 'fa7f8ad2f3fe509ff69dc574ddad0ae4d329ccca':
Improve code readability: extract common subexpressions into temporary variables.
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variables.
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to develop
* commit '7b48e3409a8c3ba1e83c929656e84196a6dc2e6d':
Fix a bug in H5D__virtual_write_one to stop an assertion from failing deep in H5Dwrite---project the *clipped* virtual selection instead of the virtual selection:
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deep in H5Dwrite---project the *clipped* virtual selection instead of
the virtual selection:
assertion "((src_space)->select.num_elem) == ((dst_space)->select.num_elem)"
failed: file "../../../vchoi_fork/src/H5Sselect.c", line 2617, function
"H5S_select_project_intersection"
with this backtrace:
at /home/dyoung/plain-nbsd/src/lib/libc/gen/raise.c:48
at /home/dyoung/plain-nbsd/src/lib/libc/stdlib/abort.c:74
file=0xae9e3e80 "../../../vchoi_fork/src/H5Sselect.c", line=2617,
function=0xae9e4ca0 <__func__.15686> "H5S_select_project_intersection",
failedexpr=0xae9e0e54 "((src_space)->select.num_elem) ==
((dst_space)->select.num_elem)") at
/home/dyoung/plain-nbsd/src/lib/libc/gen/assert.c:72
dst_space=0xae26f0dc, src_intersect_space=0xae0b577c,
new_space_ptr=0xbfb85fac, share_selection=true)
at ../../../vchoi_fork/src/H5Sselect.c:2749
type_info=type_info@entry=0xbfb86084,
file_space=file_space@entry=0xae0b577c, source_dset=0xae24741c,
io_info=<optimized out>) at ../../../vchoi_fork/src/H5Dvirtual.c:2784
type_info=0xbfb86084, nelmts=256, file_space=0xae0b577c,
mem_space=0xae26ec8c, fm=0xadf0401c)
at ../../../vchoi_fork/src/H5Dvirtual.c:2873
mem_type_id=216172782113783837, mem_space=0xae26ec8c,
file_space=0xae0b577c, buf=0xae203808)
at ../../../vchoi_fork/src/H5Dio.c:780
mem_type_id=216172782113783837, mem_space_id=288230376151711754,
file_space_id=288230376151711755, dxpl_id=792633534417207304,
buf=0xae203808, req=0x0)
at ../../../vchoi_fork/src/H5VLnative_dataset.c:206
mem_type_id=216172782113783837, mem_space_id=288230376151711754,
file_space_id=288230376151711755, dxpl_id=792633534417207304,
buf=0xae203808, req=0x0, cls=<optimized out>)
at ../../../vchoi_fork/src/H5VLcallback.c:2152
mem_type_id=216172782113783837, mem_space_id=288230376151711754,
file_space_id=288230376151711755, dxpl_id=792633534417207304,
buf=0xae203808, req=0x0) at ../../../vchoi_fork/src/H5VLcallback.c:2186
mem_type_id=216172782113783837, mem_space_id=288230376151711754,
file_space_id=288230376151711755, dxpl_id=792633534417207304,
buf=0xae203808) at ../../../vchoi_fork/src/H5Dio.c:313
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* commit 'd00bab96fb4da12a18b5de528c96469978c4c927':
Minor copy edits to comments -- no code changes.
Tab to space conversions.
When flushing, the metadata cache attempts to flush entries in increasing address order. To facilitate this, the metadata cache needs a list of of dirty entries in increasing address order. This is implemented via a skip list of all dirty entries in the cache.
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Re-applied tab to space conversions accidentally reverted in the
commit of the metadata cache skip list optimization, and performed
some additional tab to space conversions in passing.
Tested parallel / debug on Jelly.
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address order. To facilitate this, the metadata cache needs a list of
of dirty entries in increasing address order. This is implemented via a
skip list of all dirty entries in the cache.
To date this skip list has been maintained at all times.
However, profiling indicates that we can avoid significant overhead by
constructing the skip list of dirty entries just before a flush, taking
it down afterwareds, and not maintaining it during normal operation.
This commit implements this optimization for both serial and parallel.
Tested serial and parallel, debug and production on charis and jelly.
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~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933 to develop
Fixed HDFFV-10933
* commit '16349c5fddce8a74644e18d01d7ea8186aaaa255':
Fixed HDFFV-10933
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Description:
Updated the original fix by Kent Y. in commit
200a77d8c3e51663c375aafffff607ae9b438f4e
- used internal functions instead of public API
- moved some code into the subroutine for a cleaner look.
- added test to dsets.c
Platforms tested:
Linux/64 (jelly)
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* commit '3f46a380e084d83a84783383bdfbbd9a443e9f27':
Correct typos w/HGOTO_DONE & HGOTO_ERROR
Move H5T_vlen_reclaim to package scope
Switch H5VM inline routines back to single underscope and put a comment in their header about this naming
Clean up private / package / static namespace issues (function naming, which header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
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their header about this naming
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header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
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Part of HDFFV-10591 fix.
* commit 'f863d4f970c2f54298a69f95bb6a15e710e1ed75':
Addition to HDFFV-10591
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Description
Added missing parameter description and improved format.
Platforms tested:
Linux/64 (jelly)
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* commit '7c3d4402d730789173e413b48951fede5f6932f3':
Fix issue in H5VL_wrap_register where datatype VOL objects are casted to H5T_t *
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* commit 'f59bb712dec221a076728b6c582818bcf814d71a': (55 commits)
Fixes indenting in tools test scripts
Minor normalizations with 1.12 branch
Fixed bad parens in H5trace.c
Minor normalizations with hdf5_1_10
Mingw copy disabled
Warnings reduction in tools
Correct reference file
Correct h5diff filenames
Fixed typos in error messages.
Updated the Java tests to deal with H5Sset_extent_none changes
Fixed additional typos in tselect.c comments.
Fixes typo in tselect.c
Updates H5Sset_extent_none() to set H5S_NULL
Only one line needed to compare
Revert err file
Minor normalization with 1.10 branch
Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
revert error-stack enable
Minor normalization with 1.10.
Add release notes for tools
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