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* Revert malloc's back to using hard-coded type for sizeofJordan Henderson2017-09-011-23/+23
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* Minor comment refactoringJordan Henderson2017-09-011-3/+4
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* Update documentationJordan Henderson2017-08-311-39/+158
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-08-246-453/+455
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '593e4038b3ab474a47e468bb3478d4ae3a6820e6': Fix for daily test failure Fix for the compilation error from the PGI compiler. Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c HDFFV-10188 force non-native type description HDFFV-10188 emu insists on printing non-native description Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return. HDFFV-10188 fix typo HDFFV-10188 add missing copy commands HDFFV-10188 Add tests and files HDFFV-10188 enable null space test HDFFV-10188 add release note HDFFV-10188 - Check for empty string first HDFFV-10188 error on NULL dataspace
| * Fix for daily test failureVailin Choi2017-08-241-1/+1
| | | | | | | | Fix for the compilation error from the PGI compiler.
| * Modifications based on comments from pull request reviewVailin Choi2017-08-234-47/+26
| | | | | | | | | | (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
| * Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 fileVailin Choi2017-08-226-415/+438
| | | | | | | | | | Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
* | Updated H5C__flush_single_entry() in H5C.c to correctmainzer2017-08-151-8/+18
| | | | | | | | | | | | | | duplicate metadata write bug observed in 1.10.1. Tested parallel/production on jelly parallel/debug & parallel/production on charis (in develop branch)
* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Jordan Henderson2017-08-1122-888/+2362
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| * Moved H5PL diagnostic pragmas to comply with old gcc requirements that theyDana Robinson2017-08-022-17/+19
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| * Minor tweaks in response to code review.Dana Robinson2017-08-011-6/+2
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| * Merge branch 'develop' into h5pl_commitDana Robinson2017-08-014-19/+24
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| | * Skip test in test/fheap.c when:Vailin Choi2017-07-181-1/+1
| | | | | | | | | | | | | | | | | | a) multi/split drivers and b) persisting free-space or using paged aggregation strategy because the library will fail file creation (temporary) for the above conditions.
| | * Changes made based on RFC review commentsVailin Choi2017-07-184-18/+23
| | | | | | | | | | | | Test the changes in a branch via daily testing.
| * | Major rework of H5PL package code before bringing VOL changesDana Robinson2017-07-1413-817/+1856
| |/ | | | | | | | | | | | | | | over. Brings coding standards in line with the rest of the library, enforces better software engineering principles, and makes everything more maintainable.
| * Merge pull request #596 in HDFFV/hdf5 from GreaterThan-2GB-MPIO to developRichard Warren2017-07-131-46/+458
| |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit '6a5aa46e936340ed540359290374fa909f9213a6': Added a brief outline for Large MPI-IO transfers into RELEASE.txt Fix up the ExpressMode check for skipping slow running tests. Include code fixes and additional modifications pointed out by code reviewers Commited changes to the development branch here to allow a pull request to be published Commit changes needed for pull request
| | * Include code fixes and additional modifications pointed out by code reviewersRichard Warren2017-07-101-6/+6
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| | * Commited changes to the development branch here to allow a pull request to ↵Richard Warren2017-07-051-46/+458
| | | | | | | | | | | | be published
| * | Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-104-6/+26
| |/ | | | | | | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* | Fix bug where incorrect amount of data was being read from the fileJordan Henderson2017-08-101-1/+1
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* | Add test file to build processJordan Henderson2017-08-031-1/+1
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* | Suggested changes from code reviewJordan Henderson2017-07-075-12/+60
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* | Amend header comment errorJordan Henderson2017-07-061-19/+18
| | | | | | Suggested fix for allocating too small of a buffer for the chunk data
* | Clean up remaining warningsJordan Henderson2017-07-061-6/+21
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* | Add prototype for H5D__cmp_filtered_collective_io_info_entry_ownerJordan Henderson2017-07-051-0/+2
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* | Add comment for memory copy possibly not being necessary anymore forJordan Henderson2017-07-051-0/+1
| | | | | | Multi-Chunk I/O
* | Remove use of H5E_CANTDISTRIBUTE errorJordan Henderson2017-07-052-2/+1
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* | Add comment for full overwrite special caseJordan Henderson2017-07-051-0/+8
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* | Add remaining documentation/commentsJordan Henderson2017-07-051-23/+54
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-07-05442-4893/+4415
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '6428a637752753cc8a9007c0c3c38b9ea9cc97fd': (165 commits) Skip HDFFV-10160 filenotclosed test for split/multi driver Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting More minor whitespace cleanup Fixed a minor comment typo in H5R.c * Reverted removal of H5I_REFERENCE to avoid breaking binary compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c. Added missing free() call to test_misc19(). Purged the unused H5I_REFERENCE from the library. Added a test for VFD IDs to testhdf5. Revert "Partial removal of NDEBUG ifdefs from the library." Partial removal of NDEBUG ifdefs from the library. Removed compiler flag cleanup since Solaris chokes on it. Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file. Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true. Updated the --enable-debug/production handling in configure.ac so that it more reliably indicates that the configure option can no longer be used. Previously, using --enable-debug="", etc. would not trigger an error (even though such usage is unlikely). Added awk processing to remove extraneous whitespace from H5_ flags in configure. Fixed a comment in configure.ac HDFFV-10219 another mode change HDFFV-10219 change subset to use BINARY mode for h5dump HDFFV-10219 default input binary to NATIVE Set default of var to NATIVE HDFFV-10219 - disable h5dump tests until h5import NATIVE is fixed ...
| * More minor whitespace cleanupDana Robinson2017-07-031-3/+3
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| * Fixed a minor comment typo in H5R.cDana Robinson2017-07-031-1/+1
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| * * Reverted removal of H5I_REFERENCE to avoid breaking binaryDana Robinson2017-07-0315-5/+100
| | | | | | | | | | | | compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c.
| * Purged the unused H5I_REFERENCE from the library.Dana Robinson2017-07-0114-115/+22
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| * Added a test for VFD IDs to testhdf5.Dana Robinson2017-07-012-243/+70
| | | | | | | | | | | | | | This required adding some code to generate a fake VFD class to pass to H5FDregister(). Also, a bunch of whitespace and comment tidying.
| * Fix for HDFFV-10160Vailin Choi2017-06-293-0/+36
| | | | | | | | Modifications to fix the assertion/abort failure when the application does not close the file.
| * Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiersVailin Choi2017-06-115-88/+155
| | | | | | | | Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
| * Revert "Merge pull request #567 in HDFFV/hdf5 from ↵Dana Robinson2017-06-098-395/+230
| | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop to develop" This reverts commit 4242753848c44ab3b5d226e66225eac2f64db314, reversing changes made to b0e79fe6dd20ec7aa1b3e5f0f8b370639a4ef5bd.
| * * Made STATIC free lists EXTERN for H5O_layout_t.Dana Robinson2017-06-077-170/+251
| | | | | | | | * Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
| * Updated H5O_layout_t dynamic work to use the H5FL interface.Dana Robinson2017-06-077-28/+79
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| * Made some H5O_layout_t stack allocations dynamic (quiets warnings).Dana Robinson2017-06-066-53/+86
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| * Merge branch 'develop' into windows_openDana Robinson2017-05-3130-1674/+1755
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| | * Merge branch 'develop' into compat_feature_flagDana Robinson2017-05-2611-137/+145
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| | | * Merge pull request #538 in HDFFV/hdf5 from ↵Dana Robinson2017-05-267-128/+131
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:may_dev_warnings to develop * commit '57f0a296c0b727e3d86cea312ba46efc98d76227': Minor warning fix. More minor warning fixes. Minor warning fixes in the tools. Minor type fixes to h5watch. A few more warnings fixed. Fixed additional minor warnings. Fixed many minor warnings.
| | | | * More minor warning fixes.Dana Robinson2017-05-251-1/+1
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| | | | * Fixed many minor warnings.Dana Robinson2017-05-256-127/+130
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| | | * | Merge pull request #534 in HDFFV/hdf5 from ↵Frank Willmore2017-05-251-0/+5
| | | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~FRANK.WILLMORE/hdf5:fix-set-mpi-err-handler to develop * commit '1ee90786196c10c2c616a9fb4b8b1f92ebefa1f2': updated MPI error handling call for MPICH2 standard cleanup enabled MPI error handling added test file
| | | | * | updated MPI error handling call for MPICH2 standardFrank Willmore2017-05-241-1/+1
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| | | | * | enabled MPI error handlingFrank Willmore2017-05-231-0/+5
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| | | * | | Added missing casts for the return value of H5I_object_verify().Dana Robinson2017-05-243-9/+9
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