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* Finish converting H5PB_* routines to use shared file pointer, instead of topQuincey Koziol2019-08-206-51/+54
| | | | file pointer.
* First pass of converting H5PB_* routines to use shared file pointers.Quincey Koziol2019-08-197-49/+150
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* Rest of changes for 'top' file pointer to 'shared' file pointer for H5F__accumQuincey Koziol2019-08-194-16/+15
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* Partial H5F__accum_* routines.Quincey Koziol2019-08-196-36/+34
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* Changes based on PR feedback.Vailin Choi2019-08-151-2/+4
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* Merge pull request #17 in ~VCHOI/my_third_fork from develop to ↵Vailin Choi2019-08-1521-1202/+1690
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | bugfix/HDFFV-10813-swmr-test-fails-on-jelly-with * commit '3a504899eef1a66031c6f52623c24bb4e51ca51e': Correct name of folder Mostly whitespace in testpar, addl changes for tmp dir Whitespace cleanup Added public H5Sselect_adjust_u and H5Shyper_adjust_s calls. Some refactoring prior to implementing new H5P MPI functions. * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately. Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example. Changed the directory name left out from the previous commit. Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts. Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameter HDFFV-10879 fix test varname
| * Merge pull request #1873 in HDFFV/hdf5 from ↵Dana Robinson2019-08-159-484/+566
| |\ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:H5Pset_fapl_mpi to develop * commit 'bd8da502cf5b763433e3c628a4043a4264529cec': Some refactoring prior to implementing new H5P MPI functions. * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately.
| | * Some refactoring prior to implementing new H5P MPI functions.Dana Robinson2019-08-149-484/+566
| | | | | | | | | | | | | | | | | | * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately.
| * | Merge pull request #1874 in HDFFV/hdf5 from ↵Dana Robinson2019-08-153-0/+82
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5s_api_for_daos to develop * commit 'c490fefbc3199d45fa4d3af09dd567671a244e8d': Added public H5Sselect_adjust_u and H5Shyper_adjust_s calls.
| | * | Added public H5Sselect_adjust_u and H5Shyper_adjust_s calls.Dana Robinson2019-08-153-0/+82
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| * | | Merge pull request #1869 in HDFFV/hdf5 from ↵Jerome Soumagne2019-08-155-9/+10
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5:topic_file_get_id to develop * commit '7f5a5020c8ec882e6b7eceab878470003e2a8b63': Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameter
| | * | Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameterJerome Soumagne2019-08-145-9/+10
| | |/ | | | | | | | | | Fix app_ref_count from being incremented when private routines are used
| * | Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-144-709/+1032
| |/ | | | | | | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
* | Fix for HDFFV-10813 H5Fset_metadata_read_retry_info() test fails on jelly ↵Vailin Choi2019-08-141-1/+1
|/ | | | with PGI/19.
* Added map API build status to libhdf5.settings.Dana Robinson2019-08-141-0/+1
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* Merge pull request #1860 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:map_api_merge ↵Dana Robinson2019-08-1335-12/+1900
|\ | | | | | | | | | | | | | | | | | | to develop * commit 'd95745235a468b17f697843adb3d0e54bd919893': Updated h5trav.c to emit output that doesn't require ddl changes for map support. Fixed Map API CMake option Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput. Added the map (H5M) API
| * Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput.Dana Robinson2019-08-132-17/+17
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| * Added the map (H5M) APIDana Robinson2019-08-1335-12/+1900
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* | Added ifdef for intel compilers, __GNUC__ has to be defined for header files ↵M. Scot Breitenfeld2019-08-131-1/+1
|/ | | | which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers.
* Added gcc conditional for __attribute__((fallthrough)), removes 34 warnings ↵M. Scot Breitenfeld2019-08-081-0/+4
| | | | on theta (10% of warnings).
* Fix return type for H5Sselect_intersect_block().Quincey Koziol2019-07-311-1/+1
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* Updated H5TRACE macro.Quincey Koziol2019-07-301-0/+1
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~koziol/hdf5 ↵Quincey Koziol2019-07-3010-12/+8575
|\ | | | | | | into develop
| * Update comment and check for strtoumax.Larry Knox2019-07-261-3/+2
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| * Add HD to string functions.Larry Knox2019-07-264-53/+58
| | | | | | | | | | | | Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers.
| * Squashed commit of the following:Larry Knox2019-07-2510-12/+8571
| | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* | Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, alongQuincey Koziol2019-07-3013-152/+399
|/ | | | with tests and minor cleanups and refactorings.
* HDFFV-10845 update mingw cmake changesAllen Byrne2019-07-171-7/+5
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* HDFFV-10845 add_custom_command requires emulatorAllen Byrne2019-07-171-2/+2
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* HDFFV-8631, HDFFV-10595, HDFFV-10845Allen Byrne2019-07-171-1/+5
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* HDFFV-8631 mingw is different platformAllen Byrne2019-07-171-2/+2
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* HDFFV-10845 add support for mingw toolchainAllen Byrne2019-07-171-2/+2
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* H5P: Fix wrong value comparison in assertJerome Soumagne2019-07-161-3/+5
| | | | Move compile assert of H5P_plist_type to H5P__init_package()
* Reverted snprintf to sprintf in the multi VFD sinceDana Robinson2019-07-111-12/+12
| | | | the former causes problems on Windows.
* Revert path processing to fix daily test errors.Dana Robinson2019-07-101-1/+1
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* Merge branch 'develop' into feature/update_gcc_flagsQuincey Koziol2019-07-101-1/+1
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| * HDFFV-10581 fix locations for static pdb filesAllen Byrne2019-07-081-1/+1
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* | Updates to warnhist script, along with a few cleanups, and add some commentsQuincey Koziol2019-07-106-7/+25
| | | | | | | | to warning cleanups that are a bit obscure.
* | Merge branch 'develop' into feature/update_gcc_flagsQuincey Koziol2019-07-031-1/+1
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| * Fixed libhdf5 settings file for both autotools & CMakeDhvanil Popat2019-06-251-1/+1
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* | Add support for GCC9, update warnhist script, and clean up warnings.Quincey Koziol2019-07-0315-80/+93
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* Merge pull request #1787 in HDFFV/hdf5 from ↵Dana Robinson2019-07-023-5/+11
|\ | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit 'f250815151df8da8a93c0ff781a3cf134f1c6cbd': Cleaned up misc warnings.
| * Cleaned up misc warnings.Dana Robinson2019-06-293-5/+11
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* | Move the -Wformat-nonliteral warning to the developer flags. Fix bugsQuincey Koziol2019-06-291-1/+1
| | | | | | | | I introduced in the last commit.
* | Merge branch 'develop' into feature/update_gcc_flagsQuincey Koziol2019-06-2818-855/+565
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| * Merge pull request #1781 in HDFFV/hdf5 from ↵Dana Robinson2019-06-283-57/+93
| |\ | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit 'f83d034105e2c72210dd41723044acca37a6d735': Refactored some fsinfo code from H5Fsuper.c to H5Ofsinfo.c.
| | * Refactored some fsinfo code from H5Fsuper.c to H5Ofsinfo.c.Dana Robinson2019-06-273-57/+93
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| * | Merge pull request #1782 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:warning_fixes ↵Dana Robinson2019-06-282-4/+3
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '1c4101c6a77dd9223483dd9e3f7bec0f9e92f435': Fixed various warnings in testhdf5 files. Warning fixes: * fix for static/const flipped in H5Dint.c * Removed missing done target in H5Rint.c * Fixed misleading indentation in h5format_convert.c
| | * | Warning fixes:Dana Robinson2019-06-282-4/+3
| | |/ | | | | | | | | | | | | | | | * fix for static/const flipped in H5Dint.c * Removed missing done target in H5Rint.c * Fixed misleading indentation in h5format_convert.c
| * | (1) Add/remove comments.Vailin Choi2019-06-274-191/+105
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (2) A temporary fix to address the test/objcopy.c: test_copy_group_deep() test failure with the family driver. The test failure occurs with these configurations in objcopy.c: --with shared src messages (CONFIG_SHARE_SRC) --without shared dst messages (CONFIG_SHARE_DST) --with latest format for source file (CONFIG_SRC_NEW_FORMAT) --without dense attributes (CONFIG_DENSE) --with latest format for destination file (CONFIG_DST_NEW_FORMAT) The temporary fix is in src/H5MFaggr.c (see comments above #ifdef REPLACE/#endif).
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