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to develop
* commit '0c20c65e2f3abf390ad87c9167daca4cdff2de39':
Added the HDopen work-around on windows to pio_engine.c
Adds _wopen support on Windows so that files with UTF-8 names can be opened.
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can be opened.
Fixes: HDFFV-2714, HDFFV-3914, HDFFV-3895, HDFFV-8237, HDFFV-10413, HDFFV-10691
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develop
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~JSOUMAGNE/hdf5:topic_thread_private to develop
* commit 'dc69df49e6a8896606c9e4bd0987613a02f7a25a':
CMake: fix pthread linking to only be private
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(Primarily for use in the async VOL connector, which has to schedule API
operations for future execution and then restore the state of the library when
the operation actually executes)
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cache. Fix issues involving datasets being "no allocated" when they
contain cached raw data.
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classes.
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to develop
* commit 'bcf5c400c06bf06820b25c37eceaa97245f15f1f':
Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.h
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Add REQUIRED to find_package(Threads)
Link against thread library if static and not WIN32 platform
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develop
* commit '320eaf91b9adb36bb0fed9264d460e4a808200b7':
More changes to align with incoming selection improvements.
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develop
* commit 'fb5d1a37c11bca613175a48262a2147e99c9dede':
Align develop with incoming hyperslab_updates branch changes.
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the search of
the "tag_list" to find out the "corked" status of an object.
The fix:
(1) Add a counter "num_objs_corked" in the cache structure to track the number
of "corked" objects.
(2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
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~DEROBINS/hdf5_der:pread_vfd_squash to develop
* commit '055208b71c573be3d4b1047b840d4d8b255bc25e':
Minor tweak to CMake preadwrite entry.
Updated sec2, log, and core VFDs to use pread/pwrite when available (can be controlled via a configure/CMake option)
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available (can be controlled via a configure/CMake option)
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~DEROBINS/hdf5_der:valgrind_fixes to develop
* commit '5f1f231310bcb3278f11a51e1ea47782f6ee3235':
Updated H5Dio.c comment.
Fixed a valgrind issue with the unprotect log message. The logging call was placed after the point where the cache entry was freed. The fix was to just use the entry's address directly in the log call instead of the entry itself.
Fixed a bug revealed by the dtransform test. A datatype transform buffer needed to be calloc'd.
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call was placed after the point where the cache entry was freed.
The fix was to just use the entry's address directly in the log
call instead of the entry itself.
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buffer needed to be calloc'd.
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Add script raybsub to handle submitting .lsf files on ray with bsub <
script.lsf syntax that we couldn't handle with CMake.
Add hpc-cmake-tgz option for bin/release.
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Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
The test for HDFFV-10588 has revealed a bug in H5Ewalk.
H5Ewalk did not stop midway even when the call back function returns
H5_ITER_STOP. This is because a condition is missing from the for
loops in H5E__walk causing the callback functions unable to stop until
all the errors in the stack are iterated. Quincey advised on the final
fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR
to HERROR, and the for loops won't continue when "ret_value" is not 0.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
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Description:
HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters
Added a check for zero value
HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper
This is actually an Invalid read issue. It was found that the
attribute name length in an attribute message was corrupted,
which caused the buffer pointer to be advanced too far and later
caused an invalid read.
Added a check to detect attribute name and its length mismatch. The
fix is not perfect, but it'll reduce the chance of this issue when a
name length is corrupted or the attribute name is corrupted.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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* commit '2d7eb9a4c3a841f7612b88f6b559792cb6143930':
Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is supplied
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supplied
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~BMRIBLER/hdf5_bmr_fixbug:develop to develop
* commit '90d13bef33f9e2e80b23996a0c39f16f7c34ecf8':
Fixed typo Platforms tested: Darwin (osx1010test)
Refixed HDFFV-10578 Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
Removed previous change in H5O__chunk_deserialize().
Removed the previous change in H5O__chunk_deserialize()
Removed previous change in table_list_add().
Removed the previous change in table_list_add()
Updated per review Description: HDFFV-10676 - CVE-2018-13873 Changed the new assert to if statement, per Dana's comment. Platforms tested: Linux/64 (jelly)
HDFFV-10578 and HDFFV-10676 Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error.
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Description:
Applied Neil's fix for this issue after removing previous
attempt. The resources are now released in init_objs() when
failure occurs there.
Neil will fix HDFFV-10676 separately.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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Description:
HDFFV-10676 - CVE-2018-13873
Changed the new assert to if statement, per Dana's comment.
Platforms tested:
Linux/64 (jelly)
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