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* Fix for HDFFV-10333:Vailin Choi2018-07-114-15/+41
| | | | | | | | | 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
* Merge pull request #1043 in HDFFV/hdf5 from ↵Dana Robinson2018-05-318-584/+318
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop * commit '1da9c5545c013ebc540ba3044810889d4acfa5be': Restored some unused #defines to the deprecated section of H5Dpublic.h. Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers. Updated commenting in the H5DO compat test. Stripped out most of the duplicated functionality in the H5DO compat test. * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines. * Fixed the error tests * Moved common functionality into helper functions Normalize with trunk prior to update merge Fixed a warning. Finished move of H5DOread/write_chunk calls to H5D. First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| * Restored some unused #defines to the deprecated section of H5Dpublic.h.Dana Robinson2018-05-151-1/+13
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| * Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-05-152-85/+78
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| * | * Added H5DO compatibility functions.Dana Robinson2018-05-042-67/+51
| | | | | | | | | | | | | | | * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
| * | * Fixed the error testsDana Robinson2018-05-023-89/+136
| | | | | | | | | | | | * Moved common functionality into helper functions
| * | Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-3029-1863/+1832
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| * | | Normalize with trunk prior to update mergeDana Robinson2018-04-301-16/+16
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| * | | Fixed a warning.Dana Robinson2018-04-301-1/+1
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| * | | Finished move of H5DOread/write_chunk calls to H5D.Dana Robinson2018-04-305-600/+142
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| * | | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-302-5/+154
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
* | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-3117-412/+426
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'e8ece625f223032db0d26cfffafc045e4ccdf37d': Normalize with vol_integration.
| * | | | Normalize with vol_integration.Dana Robinson2018-05-2917-412/+426
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* | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-305-256/+141
|\ \ \ \ \ | |/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'd184e6db94163dcc8761182744a6c524a4850887': Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c. Correct script names Fix typo Minor H5FS tweaks. Put back CTRL-L chars Update support link Update text Valgrind fixed by checking for prefix_len of 0
| * | | | Removed unused H5MF functions and updated FUNC_ENTER macros andDana Robinson2018-05-241-206/+91
| | | | | | | | | | | | | | | | | | | | naming in H5MFsection.c.
| * | | | Minor H5FS tweaks.Dana Robinson2018-05-243-12/+12
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| * | | | Put back CTRL-L charsAllen Byrne2018-05-231-52/+52
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| * | | | Valgrind fixed by checking for prefix_len of 0Allen Byrne2018-05-231-90/+90
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* | | | Changes made based on feedback from pull request #1039.Vailin Choi2018-05-144-24/+25
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* | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-1430-1956/+1911
|\ \ \ \ | |/ / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits) GGC requires attribute before function Correct COMPILE defs usage Add missing module_dir property Text cleanup Correct sentence punctuation. Add release note. Use set_property for MT flag Correct command usage Remove APPEND Fix typo Add missing test lib add missing folder to path Fix another command revert Missed a command revert Revert to old style for LINK_FLAGS gen expr not working LINK_FLAGS must be separate property sets Fix link flags syntax Revert refactor link flags refactor link flags to interface Refactor link flags ...
| * | | GGC requires attribute before functionAllen Byrne2018-05-091-20/+20
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| * | | Correct COMPILE defs usageAllen Byrne2018-05-091-5/+5
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-3028-1871/+1833
| |\ \ \ | | | |/ | | |/| | | | | | | | | | | | | | | | | * commit '1f8cb03e11a46f853881f45dac18eff2dd68401e': Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean') Further minor cleanups Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
| | * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-29451-31489/+37928
| | |\ \ | | | | | | | | | | | | | | | merge_hyperslab_updates
| | * \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-04-1117-84/+736
| | |\ \ \ | | | | | | | | | | | | | | | | | | merge_hyperslab_updates
| | * | | | Further minor cleanupsQuincey Koziol2017-03-283-39/+35
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| | * | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-03-2815-41/+192
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | merge_hyperslab_updates
| | * | | | | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-2829-1836/+1802
| | | | | | | | | | | | | | | | | | | | | | | | | | | | improvements.
| * | | | | | TRILABS-19 Fix missing angle charAllen Byrne2018-04-271-2/+2
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| * | | | | | TRILABS-19 add mpi libs to utility programsAllen Byrne2018-04-261-4/+4
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| * | | | | | TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-261-63/+56
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* | | | | | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-2413-151/+551
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* | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-231-11/+2
|\ \ \ \ \ | | |_|_|/ | |/| | | | | | | | | | | | | * commit 'fa829e322ed44a67e2b3f2d6adf1306ad794859b': Fix non-threadsafe API context head pointer handling.
| * | | | Fix non-threadsafe API context head pointer handling.Quincey Koziol2018-04-191-11/+2
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* | | | | TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-201-1/+1
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* | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-183-53/+26
|\ \ \ \ \ | |/ / / / | | | | | | | | | | | | | | | | | | | | * commit 'e217bd113db96b96b485de82395688ca2313918a': Resolve memory leak of last API context, by freeing it in H5CX terminate routine. Revert "Close memory leak of last API context when shutting library down."
| * | | | Resolve memory leak of last API context, by freeing it in H5CX terminateQuincey Koziol2018-04-183-35/+11
| | | | | | | | | | | | | | | | | | | | routine.
| * | | | Revert "Close memory leak of last API context when shutting library down."Quincey Koziol2018-04-182-21/+18
| | | | | | | | | | | | | | | | | | | | This reverts commit 0bd3634dc5747d88582a966050896bad57acb892.
* | | | | TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-171-2/+9
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* | | | Close memory leak of last API context when shutting library down.Quincey Koziol2018-04-172-18/+21
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* | | | HDFFV-10444 fix soversion numbers for librariesAllen Byrne2018-04-101-2/+2
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* | | | Remove vestiges of H5_DEBUG_BUILD macro, switching it to the moreQuincey Koziol2018-04-061-2/+2
| | | | | | | | | | | | | | | | standard H5CX_DEBUG form.
* | | | Minor warning cleanup while working on VOL issues.Dana Robinson2018-04-062-3/+3
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* | | | Correct errors with non-"instrumented library" builds (production & parallel,Quincey Koziol2018-04-052-0/+8
| | | | | | | | | | | | | | | | generally speaking).
* | | | Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for theQuincey Koziol2018-04-021-2/+14
| | | | | | | | | | | | | | | | file's free space manager (and add a comment about them).
* | | | Add comment for the file flush when the file low / high bounds are changedQuincey Koziol2018-04-011-0/+19
| | | | | | | | | | | | | | | | after a file is open.
* | | | Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-04-014-133/+171
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| * | | | Created internal functions for a couple of H5F calls.Dana Robinson2018-03-303-248/+334
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* | | | | Expanded comments abuot H5CX_t fields.Quincey Koziol2018-03-291-12/+14
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* | | | | Add an assert to verify that we don't write when between MPI_Barrier() callsQuincey Koziol2018-03-271-0/+3
| | | | | | | | | | | | | | | | | | | | during a flush.
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