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* [svn-r14126] Description:Quincey Koziol2007-08-292-2/+2
| | | | | | | | | | | | | Move H5Gunlink to deprecated symbol section, replacing internal calls with H5Ldelete. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14125] Description:Quincey Koziol2007-08-291-1/+1
| | | | | | | Correct another typo in return value on error FAIL -> NULL Tested on: FreeBSD/32 6.2 (duty)
* [svn-r14123] Description:Quincey Koziol2007-08-282-4/+4
| | | | | | | | | | | | | Move H5Gmove2() to deprecated code section, replacing it with H5Lmove() in the source code. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14122] Description:Quincey Koziol2007-08-283-4/+4
| | | | | | | | | | | | | Move H5Gmove() to deprecated code section, replacing with H5Lmove() in source files. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14120] Description:Quincey Koziol2007-08-282-3/+5
| | | | | | | | | | | | Move H5Glink2 to deprecated routines section. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14117] Description:Quincey Koziol2007-08-284-19/+19
| | | | | | | | | | Move H5Glink() into "deprecated routines" section, replacing internal usage with H5Lcreate_hard/H5Lcreate_soft. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Solaris/32 5.10 (linew)
* [svn-r14115] Description:Quincey Koziol2007-08-287-80/+110
| | | | | | | | | | | | | | | | | Remove all plain calls to H5Gopen() from source, replacing them with either H5Gopen2(). Add test for H5Gopen1(). Reformatted several pieces of code, to clean them up. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14109] Description:Quincey Koziol2007-08-232-5/+29
| | | | | | | | | Make certain to define the API function and typedef version macros in all situations. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon)
* [svn-r14108] Description:Quincey Koziol2007-08-231-8/+8
| | | | | | | | | | | | Make version macro for typedefs closer to version macro for API functions. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14104] Description:Quincey Koziol2007-08-235-6/+40
| | | | | | | | | | | | | Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate them, leaving only a few tame specimens in text files and comments. ;-) Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14101] Description:Quincey Koziol2007-08-231-2/+1
| | | | | | | | | Change definition of H5E_walk1_t compatibility type to match the H5E_walk_t type in the 1.6.x library. Tested on: Mac OS X/32 10.4.10 (amazon) Too minor to require commit test
* [svn-r14097] Description:Quincey Koziol2007-08-218-280/+460
| | | | | | | | | | | | | First real use of API versioning code, H5E routines switched to use new API versioning scheme. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14096] There're 3 changes in this checkin as below:Raymond Lu2007-08-202-18/+104
| | | | | | | | | | | | | | | | | | 1. In H5Dwrite and H5Dread, let the data buffer point to a fake address if the application passes in an empty buffer. This is mainly for MPIO programs that some processes may not have any data to write or read but still participate the I/O. This solution solves some MPI's problem like the ChaMPIon on tungsten which doesn't support empty buffer. 2. The ChaMPIon on tungsten doesn't support complex derived MPI data type correctly and collective I/O when some processes don't have any data to write or read correctly. Detect the compiler "cmpicc" in the system-specific config file and set the variables for these two cases to false. The PHDF5 library already has set up a way to switch collective chunked I/O to independent under these two cases. 3. A bug fix - During the work of the optimization for compound data I/O, the case for switching collective chunked I/O to independent I/O was leftout. Fixed it by adding I/O caching to it in H5D_multi_chunk_collective_io in H5Dmpio.c. Tested on tungsten, cobalt, and kagiso for parallel; on linew and smirom for serial.
* [svn-r14086] Description:Quincey Koziol2007-08-142-5/+19
| | | | | | | | | | | | | | Correct error in metadata cache entry logic for free space objects, where a free space header could unpin its entry in the cache, even when the sections for that free space manager were still in the cache and technically holding the header pinned. Fix problem by checking for the section info in the cache before allowing the header to unpin its cache entry. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r14085] Description:Quincey Koziol2007-08-145-23/+62
| | | | | | | | | Refactor H5HF_size() size statistics code for fractal heap to conform to how the rest of the fractal heap routines work. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon)
* [svn-r14084] Description:Quincey Koziol2007-08-141-1/+1
| | | | | | | | | | Change metadata cache protect access from "write" to "read" for the free space header, which follows the same pattern as the fractal heap's use of the metadata cache. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon)
* [svn-r14083] Description:Quincey Koziol2007-08-146-27/+50
| | | | | | | | | | Correct problem with fractal heap's free space size usage gathering routine, which was "poisoning the cache" by loading an incorrectly initialized piece of metadata from the file. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 6.2 (amazon)
* [svn-r14082] Description:Quincey Koziol2007-08-141-0/+12
| | | | | | | | | Fix bug with moving object header messages forward into null messages of exactly the same size and located in an object header chunk with a gap. (Exposed by netCDF-4 test) Tested on: FreeBSD/32 6.2 (duty)
* [svn-r14073] Description:Quincey Koziol2007-08-101-29/+29
| | | | | | | | Re-order several switch statements to match the ordinal numbering of enumerated types. Tested on: None - too simple to require
* [svn-r14067] Purpose: Revise usage of H5_HAVE_SIGLONGJMPScott Wegner2007-08-101-1/+3
| | | | | | | | Description: The way I had integrated H5_HAVE_SIGLONGJMP previously, we conditionally removed far more functionality than we needed. As a result, Windows type alignment was lost. This commit localizes the ifdef so it only surrounds the actual call to siglongjmp. This is equivalent to what we've done in the past-- simply comment out the line. Tested: VNET on WinXP
* [svn-r14065] Second try at checking in the "cork the cache" modification.John Mainzer2007-08-104-34/+14
| | | | | | | | First attempt contained slightly dated versions of the files listed below. Must also note that the mods were tested with h5committest, and two other linux builds.
* [svn-r14064] Implemented function allowing the user to cork the metadata cache.John Mainzer2007-08-106-59/+266
| | | | Also implemented associated test code.
* [svn-r14056] Purpose: Take advantage of new H5_HAVE_SIGLONGJMP flag in ↵Scott Wegner2007-08-081-1/+1
| | | | | | | | | | | H5detect.c Description: Visual Studio does not have the function siglongjmp. Therefore, we have created a new configure flag H5_HAVE_SIGLONGJMP that tests for this. We use this within H5detect.c. Tested: VS.NET h5committest
* [svn-r14047] Purpose: Adding H5_HAVE_SIGLONGJMP macro to configure.Mike McGreevy2007-08-071-0/+3
| | | | | | | Description: Configure will now detect the presence of the 'siglongjmp' function. If present, the macro H5_HAVE_SIGLONGJMP will be defined in src/H5pubconf.h. Tested: kagiso, smirom, linew
* [svn-r14031] Bug fix. Chunk address wasn't passed into some I/O functions ↵Raymond Lu2007-07-311-2/+2
| | | | in H5D_chunk_read and H5D_chunk_write. Tested only on liberty because it's a simple change.
* [svn-r14027] Maintenance: changed version number to 1.8.0-beta3post1 using ↵Elena Pourmal2007-07-301-2/+2
| | | | bin/h5vers script
* [svn-r14025] Maintenance: Changed version number to 1.8.0-beta3, put warning ↵hdf5-1_8_0-beta3Elena Pourmal2007-07-301-2/+2
| | | | | | | into INSTALL file for the 1.8.0-beta* releases Tested: Release tar ball is available on the frp server, It was tested on kagiso with the PGI compilers.
* [svn-r14022] Description:Quincey Koziol2007-07-262-1018/+1020
| | | | | | | | | | | | | | | | Remove stray reference to "group revision" configure flag Remove Windows-specific EOL characters from src/H5FDwindows.c Add some missing types to bin/trace Re-run bin/reconfigure script to regenerate information after changes above. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (linux) Solaris/32 2.10 (linew)
* [svn-r14021] Description:Quincey Koziol2007-07-261-13/+17
| | | | | | | | | | Re-ran bin/reconfigure Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Solaris/32 2.10 (linew)
* [svn-r14020] Description:Quincey Koziol2007-07-262-1/+3
| | | | | | | | | | | Correct error in size of v2 B-tree metadata prefix, which could cause too many entries to get inserted into a node, eventually causing either a file corruption bug (if debugging asserts were off) or a core dump on the assertion which checked this. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r14017] Description:Quincey Koziol2007-07-264-182/+193
| | | | | | | | | | | Fix problem with fill value messages where the version of the format for a fill value message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r14015] Refactoring part of the code. Tested only on liberty becauseRaymond Lu2007-07-251-24/+1
| | | | the change is simple.
* [svn-r14012] Description:Quincey Koziol2007-07-248-48/+91
| | | | | | | | | | | | | Fix problem with I/O pipeline messages where the version of the format for a I/O pipeline message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14011] Refactored part of the code in H5T_conv_struct_opt. Tested only Raymond Lu2007-07-241-28/+19
| | | | on smirom because it's a simple change.
* [svn-r14010] Description:Quincey Koziol2007-07-249-84/+239
| | | | | | | | | | | | | | | Fix problem with dataspace messages where the version of the format for a dataspace message could depend on the "use the latest format" flag from the file after it was initially created. Also, move debuging routine into separate file. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14009] Description:Quincey Koziol2007-07-241-2/+2
| | | | | | | | | | | | | Drop use of "use the latest format" flag when encoding SOHM-stored shared messages and just change the version based solely on the type of shared message. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14008] Description:Quincey Koziol2007-07-241-7/+0
| | | | | | | | | | | Minor comment & testing cleanups Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14005] Description:Quincey Koziol2007-07-243-9/+9
| | | | | | | | | | | Rename H5Titerate.c source file to H5Tvisit.c, which is more descriptive of routine(s) in file. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r14004] Description:Quincey Koziol2007-07-2414-492/+889
| | | | | | | | | | | | Fix problem with datatype messages where the version of the format for a datatype message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r14003] Description:Quincey Koziol2007-07-242-8/+7
| | | | | | | | | | Code cleanup & whitespace fixups Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r14002] Description:Quincey Koziol2007-07-241-1/+1
| | | | | | | | | | Fix bug where pointer to variable was used instead of variable itself. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r13997] Moved H5D_istore_lock and H5D_istore_unlock from ↵Raymond Lu2007-07-218-179/+301
| | | | | | | | | H5D_istore_writevv and H5D_istore_readvv to H5D_chunk_write and H5D_chunk_read to avoid frequent lock and unlock and to improve some performance. Tested with h5committest on THG machines.
* [svn-r13993] Description:Quincey Koziol2007-07-211-12/+14
| | | | | | | | Correct error for checking whether an object in a file can be extended when there are no free lists maintained by the VFD. Tested on: FreeBSD/32 6.2 (duty) w/check-vfd
* [svn-r13992] Description:Quincey Koziol2007-07-211-12/+5
| | | | | | | Add some extra logging information to read & write reports. Tested on: FreeBSD/32 6.2 (duty) w/check-vfd
* [svn-r13991] Description:Quincey Koziol2007-07-201-2/+2
| | | | | | | | | Correct error in H5Gcreate() where using a non-zero local heap size hint would overwrite the default group creation property list with the non-zero size hint given, affecting all future groups created. Tested on: FreeBSD/32 6.2 (duty) w/check-vfd
* [svn-r13989] Description:Quincey Koziol2007-07-196-19/+22
| | | | | | | | | | | Rename H5A_get_version() to H5A_set_version() and actually set the attributes version in the routine. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13988] Description:Quincey Koziol2007-07-186-79/+117
| | | | | | | | | Fix bug where the version of an attribute would change after it was created, causing the amount of space used to encode it to change. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13986] Description:Quincey Koziol2007-07-179-23/+34
| | | | | | | | | Add flag to bypass (expensive) B-tree & heap size retrieval for internal calls to H5O_get_info(). Teted on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13984] Description:Quincey Koziol2007-07-1737-739/+707
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-1336-5/+1021
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
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