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* [svn-r29954] */run*-ex.sh.in:hdf5-1_10_0-patch1Larry Knox2016-05-231-3/+3
| | | | | | Scripts to compile and run installed needed relative paths to the installed bin directory instead of the ablsolute path from $prefix (on the build machines). Committing changes to version strings generated by running bin/release for HDF5 1.10.0-patch1.
* [svn-r29944] Commit version change to 1.10.0-patch1, minor corrections to ↵Larry Knox2016-05-161-2/+2
| | | | RELEASE.txt.
* [svn-r29836] Revert whitespace and non-critical changes for patch.Allen Byrne2016-04-291-123/+123
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* [svn-r29748] HDFFV-9770: Fix h5watch and CMake for HL.Allen Byrne2016-04-191-123/+123
| | | | Convert CMake sources tags from _SRCS to _SOURCES(closer match to Makefile).
* [svn-r29694] HDFFV-9756,9766,9719:Allen Byrne2016-04-141-32/+40
| | | | | | 9756-fix h5diff VDS 9766-fix h5repack VDS 9719 - reconcile tools differences
* [svn-r29597] Commit version change to 1.10.0, minor corrections and ↵hdf5-1_10_0Larry Knox2016-03-301-2/+2
| | | | additions to RELEASE.txt.
* [svn-r29525] Merge of r29509 from revise_chunks.Dana Robinson2016-03-222-3/+3
| | | | | | Misc. CMake and autotools enhancements. Tested on: jam
* [svn-r29497] Merge of r26492 from revise_chunksDana Robinson2016-03-222-4/+4
| | | | | | Changes some Visual Studio #ifdefs to Win32. Fixes MinGW issues. Tested on: 64-bit Windows 10 w/ Visual Studio 2015 Pro
* [svn-r29495] Merge of r29489 from revise_chunksDana Robinson2016-03-224-15/+11
| | | | | | | | | Misc code changes, some of which address MinGW issues. HDFFV-9516 change had previously been committed via the trunk. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, C++
* [svn-r29493] Add LT_*_VERS_* variables for HDF5 wrapper libraries.Larry Knox2016-03-221-0/+21
| | | | | | Add configure fix to create .classes directories in java subdirs. Tested with h5committest.new.
* [svn-r29486] Set version to HDF5 1.10.0-pre2Larry Knox2016-03-211-2/+2
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* [svn-r29422] Merge of r29421 from trunk. Fixes HDFFV-9516.Dana Robinson2016-03-151-0/+12
| | | | Tested on: jam
* [svn-r29391] Maintenance: Changed version number to HDF5 1.10.0-pre1 in ↵Elena Pourmal2016-03-111-2/+2
| | | | preparation for the first pre-release candidate.
* [svn-r29381] Re-ran autogen.sh on THG machines to update autotools outputDana Robinson2016-03-096-955/+955
| | | | | | | | files. Added java Makefile.in files. Tested on: jam
*-. [svn-r29378] Bring alpha2 in line with revise_chunks (up to r29365)Dana Robinson2016-03-09118-2516/+4963
|\ \ | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran autotools parallel w/ Fortran CMake serial w/ C++ and Fortran
| | * [svn-r29079] rename the coll read requirement function.Mohamad Chaarawi2016-02-102-4/+4
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| | * [svn-r29077] Description:Quincey Koziol2016-02-1017-511/+385
| | | | | | | | | | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| | * [svn-r29066] - fixing some of the internal usage of dxpls.Mohamad Chaarawi2016-02-0810-53/+59
| | |\ | | | | | | | | | | | | - merge from trunk.
| | * \ [svn-r29059] merge from trunk.Mohamad Chaarawi2016-02-0772-846/+1681
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| | | * [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-0742-441/+686
| | | | | | | | | | | | | | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
| | | * [svn-r29043] Fixes to make relative external storage work on Windows. Part ↵Dana Robinson2016-02-041-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of HDFFV-8740. - Fixed typo in Wsetenv(). - Changed HDoff_t back to off_t in test/external.c. The function signature is off_t so the types must match or you can get conversion errors. Tested on 64-bit Windows 10 w/ VS 2015
| | | * [svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵Dana Robinson2016-02-0413-127/+757
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
| | | * [svn-r29032] capture the entry address before the entry is freed to avoidMohamad Chaarawi2016-02-021-1/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | triggering a segfault in the log_flush call in H5C__flush_single_entry(). tested on Jam with Parallel.
| | | * [svn-r29030] Cleanup of test/externals before merging user patch.Dana Robinson2016-02-021-1/+3
| | | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
| | | * [svn-r29019] Fixed double declaration of a few types that only appears on ↵Dana Robinson2016-01-291-1/+7
| | | | | | | | | | | | | | | | | | | | | | | | Windows. Tested on: 64-bit Windows 10 with VS 2015 Pro
| | | * [svn-r29011] LFS changes in the autotools and library.Dana Robinson2016-01-282-66/+23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * We assume that fseeko and ftello exist. * The *64 IO functions and types are no longer explicitly used. We now rely on a mapping provided by _FILE_OFFSET_BITS (or its equivalent). * _LARGEFILE(64)_SOURCE is no longer exposed via AM_CPPFLAGS. The CMake files have not yet been updated but CMake is still functional. The CMake configure files will just run a few unecessary tests and create unneeded #defines until they are updated in a few days. Tested on: Linux, OS X, Solaris, z/OS
| | | * [svn-r29009] Corrected the API descriptions for H5Pget_virtual_dsetname and ↵Scot Breitenfeld2016-01-281-7/+7
| | | | | | | | | | | | | | | | H5Pget_virtual_filename.
| | | * [svn-r28996] Autotools configure updates to allow separation of build type, ↵Dana Robinson2016-01-273-95/+110
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | debug symbols, asserts, profiling, and optimization. Also much refactoring, improved help, and --enable-<foo> options will now emit errors on nonsense (e.g.: --enable-foo="asdfasdf"). The libhdf5.settings.in file was also reformatted. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial and parallel autotools w/ various options
| | | * [svn-r28995] Removed unused packages from list in --enable-debug=<pkgs> ↵Dana Robinson2016-01-273-17/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | configure option (also updated CMake). Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools serial CMake (CMake 3.3.2)
| | | * [svn-r28986] Added H5_DLLVAR to H5AC_dxpl_id.Dana Robinson2016-01-271-1/+1
| | | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial and parallel autotools
| | | * [svn-r28982] Fixed H5ST_dump signature problem and added st to the list ofDana Robinson2016-01-271-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | packages with extra debugging output. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
| | | * [svn-r28972] Removed option to clear file buffers from autotools, CMake, and ↵Dana Robinson2016-01-2616-82/+44
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | library. Buffers that will be written to disk will now always be cleared since not doing this has huge security implications. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1 serial autotools parallel autotools (MPICH 3.1.4) serial CMake
| | | * [svn-r28957] fix non-parallel bug.Mohamad Chaarawi2016-01-221-1/+2
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| | * | [svn-r28959] merge from trunk.Mohamad Chaarawi2016-01-2249-579/+572
| | |\ \ | | | |/ | | | | | | | | renaming metadata dxpl properties.
| | | * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-2148-527/+529
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| | | * [svn-r28916] Description:Quincey Koziol2016-01-1513-251/+346
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | | * [svn-r28894] Description:Quincey Koziol2016-01-1414-219/+214
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | | * [svn-r28861] Minor warning format string fix (HDFFV-9640).Dana Robinson2016-01-121-1/+1
| | | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools parallel only (MPICH 3.1.4)
| | * | [svn-r28915] Description:Quincey Koziol2016-01-1515-224/+278
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Review revisions on the way to the trunk. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| | * | [svn-r28895] Description:Quincey Koziol2016-01-147-183/+93
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Minor code tweaks and cleanups during review. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5comittest not required on this branch)
| | * | [svn-r28851] merge from trunk.Mohamad Chaarawi2016-01-1158-657/+1708
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| | | * [svn-r28832] Description:Quincey Koziol2016-01-061-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reset driver info message when superblock load fails. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial Linux/64 2.6.x (mayll) w/serial
| | | * [svn-r28824] Description:Quincey Koziol2016-01-061-3/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce asserts on buffer alignment. Tested on: Linux/32 & Linux/64 2.6.x (jam & myall) w/serial
| | | * [svn-r28819] Description:Quincey Koziol2016-01-061-14/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Align internal memory sanity checking buffer, to avoid problems when optimization is enabled. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
| | | * [svn-r28815] Description:Quincey Koziol2016-01-062-0/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add internal routine to sanity check all blocks allocated through H5MM interface. Tested on: Linux/32 2.6.x (jam) w/serial Linux/64 2.6.x (mayll) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| | | * [svn-r28811] Description:Quincey Koziol2016-01-063-10/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Switch v2 B-tree min & max records to be void*'s to be cleaner and generate less warnings. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| | | * [svn-r28802] Description:Quincey Koziol2016-01-051-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct another H5MM_free => H5MM_xfree Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel
| | | * [svn-r28800] Description:Quincey Koziol2016-01-052-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct H5MM_free => H5MM_xfree Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel
| | | * [svn-r28798] Description:Quincey Koziol2016-01-053-2/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add missing H5MMprivate.h header file Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| | | * [svn-r28797] Description:Quincey Koziol2016-01-059-64/+54
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up another round of memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel