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* [svn-r27073] Description:Quincey Koziol2015-05-152-4/+4
| | | | | | | | Clean up H5D interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27072] Description:Quincey Koziol2015-05-154-318/+203
| | | | | | | | Clean up H5B interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r27071] Description:Quincey Koziol2015-05-158-479/+482
| | | | | | | | Clean up H5B2 interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux 2.6.* (jam) w/serial & parallel
* [svn-r27070] Description:Quincey Koziol2015-05-154-64/+65
| | | | | | | | | Clean up the H5B interface code, to better align with v3 metadata cache changes. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27068] Description:Quincey Koziol2015-05-155-370/+370
| | | | | | | | | Clean up the H5A interface code, to better align with v3 metadata cache changes. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27058] Description:Quincey Koziol2015-05-1311-282/+495
| | | | | | | | | | Convert internal chunk structures to use 'scaled' coordinates instead of absolute coordinates. Tested on: Mac OSX/64 10.10.3 (amazon) w/parallel & serial Linux 2.6.x/32 (jam) w/parallel & serial Linux 2.6.x/64 (koala) w/serial
* [svn-r27045] Renamed H5_ASSIGN_OVERFLOW() to H5_CHECKED_ASSIGN() and re-orderedDana Robinson2015-05-1051-150/+171
| | | | | | the arguments to be in a more logical order. Tested on: h5committest
* [svn-r27040] Moved '*' in H5PLget_loading_state() so that bin/trace would ↵Dana Robinson2015-05-082-2/+3
| | | | | | | | correctly process it and ran bin/trace. Tested on: h5committest
* [svn-r27031] Fix warnings in H5detect and clean up code, use unsigned variablesJerome Soumagne2015-05-061-149/+152
| | | | | | | | | | | | | | | | | | | | | | Use H5_GCC_DIAG_ON/OFF to suppress larger-than and float-equal warnings Variables used with sigsetjmp/siglongjmp must be declared as volatile Remove unnecessary use of volatile after r24171 fix and fix prototypes Tested in release mode on: - jam (CentOS 5.11 i386 GCC 4.1.2) - ostrich (RHEL 6.6 ppc64 GCC 4.4.7) - local linux (OpenSuSE 13.2 x86_64 GCC 4.8.3) - local linux (Fedora 21 x86_64 GCC 4.9.2) - local linux (Fedora 21 x86_64 ICC 15.0.2) - local windows (Windows 8.1 x86_64 MSVC 2013 update 4) - lemur (MacOSX 10.10.3 x86_64 clang-602.0.49 Xcode 6.3.1) - ibm p95a07 (Ubuntu 14.10 ppc64le GCC 4.9.1) - ibm p95a07 (Ubuntu 14.10 ppc64le IBM XL C V13.1.1) - bluewaters (Cray PE 2.2.1 x86_64 GCC 4.8.2) - bluewaters (Cray PE 2.2.1 x86_64 Cray C 8.3.3) - bluewaters (Cray PE 2.2.1 x86_64 PGCC 14.2)
* [svn-r27029] Fix bad comment in H5detect, this was preventing PGCC from ↵Jerome Soumagne2015-05-061-1/+1
| | | | | | compiling correctly. Tested on: bluewaters
* [svn-r27009] Fix mismatching prototypes in H5FD/H5B2Jerome Soumagne2015-05-043-6/+6
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* [svn-r26997] Snapshot version 1.9 release 217HDF Tester2015-05-032-3/+3
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* [svn-r26996] Description:Quincey Koziol2015-05-022-11/+1
| | | | | | | | Eliminate unneccessary 'rdcc' field from common chunk info struct. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (Too minor to require h5commitest)
* [svn-r26995] Description:Quincey Koziol2015-05-022-27/+33
| | | | | | | | | | Clean up chunk 'prune by extent' and flush code, and make the rehashing routine 'update cache' hold onto more chunks, instead of evicting them as aggressively. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r26993] Description:Quincey Koziol2015-05-025-45/+100
| | | | | | | | | Align w/incoming chunk performance changes, including some small performance improvements here, as well as a few minor general code cleanups. Tested on: Mac OSX/64 10.10.3 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26986] Removed H5F_ACC_DEBUG and H5FD_DEBUG functionality.Dana Robinson2015-04-303-52/+11
| | | | | | | | | | | | The H5F_ACC_DEBUG symbol remains but has been defined to zero and has been listed as deprecated. Fixes: HDFFV-1074 Tested on: h5committest 32-bit Linux w/ C++ and Fortran and multi VFD 32-bit Linux w/ C++ and Fortran and multi VFD (no deprec symbols)
* [svn-r26961] Description:Quincey Koziol2015-04-291-48/+17
| | | | | | | | Clean up H5I code, to eliminate duplicated sections of code. Tested on: Mac OSX/64 10.10.3 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26953] Remove src temporary debug build props.Allen Byrne2015-04-281-10/+2
| | | | Move TOOLS option up before usage.
* [svn-r26907] Check range and fix conversion issue of compound members in ↵Jerome Soumagne2015-04-231-9/+25
| | | | | | H5T_copy/H5T_set_loc Tested: local linux
* [svn-r26868] Remove accum_change assert in H5T for nowJerome Soumagne2015-04-211-2/+2
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* [svn-r26848] Fix warnings in H5TJerome Soumagne2015-04-201-31/+115
| | | | Tested: local linux
* [svn-r26843] Description:Quincey Koziol2015-04-194-6/+30
| | | | | | | | Minor code & warning cleanups. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel Linux/32 2.6.18 (jam) w/serial & parallel
* [svn-r26842] Description:Quincey Koziol2015-04-1810-123/+131
| | | | | | | | | | Cache the dataset's rank & dimension sizes, instead of querying them frequently, to speed up various checks & algorithms. Also, a few minor cleanups. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel Linux/32 2.6.18 (jam) w/serial & parallel
* [svn-r26841] Description:Quincey Koziol2015-04-184-7/+5
| | | | | | | | Minor formatting cleanups and remove unused field from callback struct. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26837] Description:Quincey Koziol2015-04-176-341/+490
| | | | | | | | | | Separate allocating chunk on disk from inserting the chunk record into the index. This allows a "SWMR-safe" insert/update of chunks (the chunk is always allocated -> written -> inserted/updated in the index). Tested on: Mac OSX/64 10.10.2 (amazon) w/parallel & serial Linux/32 2.6.18 (jam) w/serial & parallel
* [svn-r26803] Fixed a minor typo in H5R code comment.Dana Robinson2015-04-141-1/+1
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* [svn-r26786] In libhdf5.settings.in, changed the C++ shared library setting ↵Dana Robinson2015-04-131-1/+1
| | | | | | | | variable from H5_CXX_SHARED (which no longer exists) to enable_static. Tested on: jam (configure only - minor change)
* [svn-r26785] Snapshot version 1.9 release 216HDF Tester2015-04-122-3/+3
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* [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-1018-250/+259
| | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* [svn-r26771] - remove unused internal dxpl properties and property lists ↵Mohamad Chaarawi2015-04-082-111/+30
| | | | | | | | from the AC layer - fix warnings in H5AC.c tested with h5committest
* [svn-r26757] Description:Quincey Koziol2015-04-076-72/+57
| | | | | | | | Minor typos & code cleanups Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-021-1/+0
| | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
* [svn-r26691] Move attribute define out of dynamic block.Allen Byrne2015-04-011-3/+3
| | | | Tested: windows
* [svn-r26690] Fix error in H5Sextent_copyNeil Fortner2015-04-011-0/+6
| | | | | | | | When the selection is set to all, H5Sextent_copy did not update the number of elements in the selection in the destination space. Fixed H5Sextent_copy to do this. Added tests for this functionality. Tested: jam, koala, ostrich (h5committest)
* [svn-r26678] add ifdef checks and setting for __attribute__ in a public ↵Mohamad Chaarawi2015-03-313-6/+10
| | | | | | place to allow usage in public routines.
* [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own ↵Albert Cheng2015-03-311-1/+1
| | | | | | | | | | | | | | | | examples The tool claimed it could handle 24bit images but there was no code to handle it. (or might be there were but was removed by previous revisions.) Also discovered that it does not accept multiple images nor -p for palette as its user document and online help message indicated. Solution: Added code to verify dimension sizes are within 8 bit raster images limit and added tests to verify the tools correctness. Need to update user document tool. Tested: h5committested.
* [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-301-2/+0
| | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
* [svn-r26650] move size_t cast from define of HG_ALIGN to usage of HG_ALIGN.Mohamad Chaarawi2015-03-301-10/+9
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* [svn-r26649] squish warnings.Mohamad Chaarawi2015-03-308-30/+33
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* [svn-r26635] Description:Quincey Koziol2015-03-283-34/+2
| | | | | | | | | | | Bring r26651 from autotools_rework branch to trunk: Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI & HP compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26632] Description:Quincey Koziol2015-03-272-22/+10
| | | | | | | | | | | Bring r26549 from autotools_rework branch to trunk: Remove the BAD_LOG2_CODE_GENERATED macro/define, it's working around bugs in old SGI compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26627] Description:Quincey Koziol2015-03-271-3/+0
| | | | | | | | | | | Bring r26545 from autotools_rework branch to trunk: Remove the WANT_DATA_ACCURACY macro/define/configure option, since it's no longer attached to any library behavior. Tested on: Linux/32 2.6.8 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26625] Description:Quincey Koziol2015-03-274-27/+0
| | | | | | | | | | | Bring r26543 from autotools_rework branch to trunk: Remove the LLONG_TO_LDOUBLE_CORRECT macro/define, it's working around bugs in very old SGI/FreeBSD/Windows compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26623] Description:Quincey Koziol2015-03-274-30/+0
| | | | | | | | | | | Bring r26513 from autotools_rework branch to trunk: Remove the LDOUBLE_TO_LLONG_ACCURATE macro/define, it's working around bugs in older SGI, HP/UX, MacOSX and Windows .NET 2003 compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26618] Description:Quincey Koziol2015-03-271-4/+0
| | | | | | | | | | | Bring r26511 from autotools_rework branch to trunk: Remove the FP_TO_INTEGER_OVERFLOW_WORKS macro/define, which is for working around bugs in the Cray X1 compiler and is no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26606] Description:Quincey Koziol2015-03-264-19/+2
| | | | | | | | | | | Bring r26508 from autotools_rework branch to trunk: Remove HW_FP_TO_LLONG_NOT_WORKS macro/define, it was only addressing Windows .NET 2003 compiler issues. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26605] Description:Quincey Koziol2015-03-264-33/+10
| | | | | | | | | | | | | | Bring r26503 & r26528 from autotools_rework branch back to the trunk: Remove old platform configure files: craynv, dec-flags, hpux11.23, ia64-linux-gnu, nec-superux14.1, sv1-cray, x86_64-redstorm-linux-gnu Also remove CONVERT_DENORMAL_FLOAT, since this was only set in the configure files being removed. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26598] Description:Quincey Koziol2015-03-262-6/+1
| | | | | | | | | | | Bring r26501 from the autotools_rework branch to the trunk: Remove ULLONG_TO_LDOUBLE_PRECISION macro/define, as it's targeting bugs in the FreeBSD and Cygwin compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26597] Description:Quincey Koziol2015-03-262-17/+2
| | | | | | | | | | | Bring r26500 from autotools_rework branch to trunk: Remove the LLONG_TO_FP_CAST_WORKS macro/define, as it targets problems with the Visual Studio 6 compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26596] Description:Quincey Koziol2015-03-265-40/+4
| | | | | | | | | | | Bring r26499 from autotools_rework branch to trunk: Remove ULLONG_TO_FP_CAST_WORKS macro/define, as it only applies to older platforms we aren't supporting any longer. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
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