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* Brings the HDFS binary compatibility and header fixes from 1.10Dana Robinson2020-08-262-13/+72
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* Revert "Merge pull request #2840 in HDFFV/hdf5 from ↵Larry Knox2020-08-251-1/+1
| | | | | | | ~LRKNOX/hdf5_lrk:hdf5_1_10_7 to hdf5_1_10_7" This reverts commit c6916356c25214ebebe2c8f88a1df659bd4ac075, reversing changes made to 6abf2770b39878acde57e74fb7d87f07be7390dc.
* Updated version to 1.10.7.1. bin/h5vers changed to accomodate theLarry Knox2020-08-251-1/+1
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* Brings the MPI datatype fixes from hdf5_1_10Dana Robinson2020-08-241-54/+60
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* Add missing mirror filesAllen Byrne2020-08-211-0/+3
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* Add new Makefile.ins to MANIFEST.Larry Knox2020-08-191-716/+0
| | | | Delete H5config.h.in~ that shouldn't have been committed.
* Commit changes for release branch: maintainer mode, default to production, ↵Larry Knox2020-08-1910-1/+9017
| | | | set HDFF5_GENERATE_HEADERS to OFF, and add file generated by autogen.sh.
* Fixed one last trailing whitespace characterDana Robinson2020-08-181-1/+1
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* Fixed trailing whitespace from revert.Dana Robinson2020-08-183-31/+31
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* Revert "Don't track file offset position when using pread / pwrite."Dana Robinson2020-08-184-80/+32
| | | | This reverts commit 9e5a68214a5e40bb8e43c5ec2a928dc70e8a6017.
* Adds missing HDstrtoumax for S3 VFDDana Robinson2020-08-181-0/+3
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* Merge of develop PRs to 1.10Dana Robinson2020-08-185-97/+155
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* Merge pull request #2799 in HDFFV/hdf5 from ↵Larry Knox2020-08-181-0/+4
|\ | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr2020:hdf5_bmr2020_addrsani_110 to hdf5_1_10 * commit 'ede1b9b1dd53caad6dfce8ec7bc4aa7b3dbce62c': Fix HDFFV-11101
| * Fix HDFFV-11101Binh-Minh Ribler2020-08-181-0/+4
| | | | | | | | | | | | | | | | | | | | Description Added initialization to local structs in the src function H5MF_settle_raw_data_fsm() and the test function test_bt2_hdr_fd() to prevent the following error in two different occurrences: MemorySanitizer: use-of-uninitialized-value Platforms tested: Linux/64 (jelly)
* | Merge pull request #2772 in HDFFV/hdf5 from ↵Larry Knox2020-08-183-13/+92
|\ \ | |/ |/| | | | | | | | | | | ~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933_110 to hdf5_1_10 * commit '538bdb35ae932a1445f32a04e8173f8805d404f8': Updated for HDFFV-10933 Fixed HDFFV-10933
| * Fixed HDFFV-10933Binh-Minh Ribler2020-08-143-13/+92
| | | | | | | | | | | | | | | | | | | | | | Description: Fixed to allow the creation of a dataset when the combination of type, space, etc doesn't work for filter and the filter is optional. Currently, it was supposed to be skipped as indicated in the documentation, but it was not skipped and the creation failed. The function H5Z_ignore_filters was added and used in H5D__create. Platforms tested: Linux/64 (jelly)
* | Brings H5Fstart_swmr_write changes from developDana Robinson2020-08-184-7/+36
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* | Merge branch 'hdf5_1_10' into h5f_start_swmr_write_locksDana Robinson2020-08-1810-787/+2305
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| * \ Merge pull request #2789 in HDFFV/hdf5 from ↵Dana Robinson2020-08-1810-787/+2305
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5ac_skiplist_optimization_1_10 to hdf5_1_10 * commit '90fa429c015649fee878530817e503393e9f269c': Brings the MDC skiplist optimizations from develop
| | * | Brings the MDC skiplist optimizations from developDana Robinson2020-08-1710-787/+2305
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* | | | Merge branch 'hdf5_1_10' into h5f_start_swmr_write_locksDana Robinson2020-08-174-2425/+1310
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| * | | Brings over S3 and HDFS VFD changes from developDana Robinson2020-08-174-2425/+1310
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* | | Adds fix for H5Fstart_swmr_write lock issueDana Robinson2020-08-172-4/+16
|/ / | | | | | | Needs a final review pass.
* | Removes email and Modifications sectionsDana Robinson2020-08-1780-670/+202
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* | Minor normalizations with developDana Robinson2020-08-1666-985/+472
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* | Minor normalizations with developDana Robinson2020-08-16100-1867/+1509
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* | Normalizations with developDana Robinson2020-08-1643-373/+276
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* | Even more normalization with developDana Robinson2020-08-1515-165/+101
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* | More normalizations with developDana Robinson2020-08-151-22/+18
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* | Misc normalizations with developDana Robinson2020-08-152-57/+35
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* | Brings monotonic timer changes from developDana Robinson2020-08-1510-725/+1182
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* | Brings Mirror VFD to 1.10 from developDana Robinson2020-08-148-1/+2494
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* | Brings splitter VFD from developDana Robinson2020-08-146-2/+1453
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* | Brings file locking changes from developDana Robinson2020-08-1419-163/+590
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* HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-1/+1
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* Brings HDFFV-11027 H5S_NO_CLASS fix to 1.10 from developDana Robinson2020-08-111-2/+5
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* Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-08-031-1/+18
| | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly)
* Merge branch 'hdf5_1_10' into 1_10_normalizationDana Robinson2020-07-301-0/+4
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| * Supply the appropriate file pointer to H5T_patch_vlen_file() without ↵vchoi2020-07-211-1/+1
| | | | | | | | H5F_VOL_OBJ from develop branch.
| * Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-211-0/+4
| | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* | Minor normalization with developDana Robinson2020-07-2718-453/+321
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* Corrected missing H5CS thread-safety change.Dana Robinson2020-07-201-5/+1
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* Brought over thread-safety changes from develop.Dana Robinson2020-07-205-22/+163
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* Merge pull request #2702 in HDFFV/hdf5 from ↵Dana Robinson2020-07-2026-288/+213
|\ | | | | | | | | | | | | ~DEROBINS/hdf5_der:1_10_normalization to hdf5_1_10 * commit '795a2e5058c6214df1777a073e6b058638377003': Normalization with develop.
| * Normalization with develop.Dana Robinson2020-07-2026-288/+213
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2020-07-1730-5509/+8988
|\ \ | |/ | | | | | | * commit '8b6cd7cfddf91308cf860f2da3d28e208fd89788': Merge of dataspace improvements from develop.
| * Merge of dataspace improvements from develop.Dana Robinson2020-07-1630-5509/+8988
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* | CMake updates:Allen Byrne2020-07-152-8/+44
|/ | | | | | Add build folder as Include for generated files Add install option for copying Fortran mod files to include folder Add PRI defines to win32defs file Exclude mingw from extra flags
* Moved over the H5S_hyper_diminfo_t from develop.Dana Robinson2020-07-103-114/+124
| | | | | Also fixed the issue with the H5S_diminfo_valid_t enum from the last commit.
* Moved hyperslab code to use the new H5S_diminfo_valid_t enum.Dana Robinson2020-07-103-33/+50
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