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* [svn-r30017] Description:Quincey Koziol2016-06-068-59/+59
| | | | | | | | | Bring warning cleanusp in r29990, 29993, 29997, 29999, 30004 from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production. (h5committest forthcoming)
* [svn-r30009] Fix for h5format_convert daily test failures when ↵Vailin Choi2016-06-041-1/+3
| | | | | | --enable-using-memchecker. Tested on jam, ostrich, moohan, osx1010test, quail, kite, mayll.
* [svn-r30002] Fixed some minor warnings in H5AC.c and H5C.c, cleaned up warningsDana Robinson2016-06-012-2/+2
| | | | | | | | in the cache tests, and made some huge static arrays dynamic in the cache tests. Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial
* [svn-r29985] Description:Quincey Koziol2016-05-304-425/+451
| | | | | | | | Extract query routines into separate source module. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r29980] Description:Quincey Koziol2016-05-301-19/+19
| | | | | | | | Cleanup whitespace to align w/revise_chunks branch Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29978] Description:Quincey Koziol2016-05-302-23/+27
| | | | | | | | | | Bring r29914 from revise_chunks branch to trunk: Banished -Wformat= warnings from the library, tools, and tests. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29976] Description:Quincey Koziol2016-05-301-53/+18
| | | | | | | | | | Bring over remaining piece of r29675 from revise_chunks branch: Refactor coding in H5D__farray_idx_delete() to be similar to H5D__earray_idx_delete() Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29969] Description:Quincey Koziol2016-05-298-25/+152
| | | | | | | | | | | Bring r29934 from revise_chunks branch to trunk: (1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit. (2) Modifications to better handle error recovery when conversion by h5format_convert fails. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29924] Description:Quincey Koziol2016-05-1210-51/+584
| | | | | | | | Bring h5format_convert tool from revise_chunks branch to trunk. Tested on: MacoSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29884] VDS correction for get_space_status, with test change.Allen Byrne2016-05-041-32/+40
| | | | | Add new files for repack tests. Add repack tests for VDS files.
* [svn-r29862] Convert source list names from *_SRCS to *_SOURCES.Allen Byrne2016-05-041-123/+123
| | | | Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
* [svn-r29850] Description:Quincey Koziol2016-05-0122-173/+946
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29842] Description:Quincey Koziol2016-04-3011-58/+96
| | | | | | | | | Bring [appropriate portions of] r29811, 29813, 29826, 29830, 29831 from revise_chunks branch to the trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29815] Description:Quincey Koziol2016-04-263-6/+6
| | | | | | | | Change 'value' pointer to H5Pset() from 'void *' to 'const void *'. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (h5committest forthcoming)
* [svn-r29776] Description:Quincey Koziol2016-04-246-3/+62
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29775] Description:Quincey Koziol2016-04-241-0/+4
| | | | | | | | Another change for 'none' file pointers. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29770] Description:Quincey Koziol2016-04-238-9/+553
| | | | | | | | Bring 'none' chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29742] Description:Quincey Koziol2016-04-191-0/+1
| | | | | | | Add missing source file for single chunk index. Tested on: Windows (via daily testing
* [svn-r29738] Description:Quincey Koziol2016-04-199-19/+650
| | | | | | | | Bring "single" chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29722] Description:Quincey Koziol2016-04-171-0/+17
| | | | | | | | Bring over more dataset tests from the revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29717] Description:Quincey Koziol2016-04-163-6/+12
| | | | | | | | | | Correct chunk index computation for earrays and farrays, particularly when copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size) that require iterating over all chunks. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29715] Description:Quincey Koziol2016-04-161-11/+15
| | | | | | | | | Clean up coding to increment/decrement underlying FAPL for multi/split VFDs, to avoid copying property lists as much. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29712] Description:Quincey Koziol2016-04-162-2/+2
| | | | | | | | Minor code cleanups to address typos & warnings. Tested on: MaOSX/64 10.11.4 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r29668] Added H5Dfarray.c to CMake.Dana Robinson2016-04-081-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 CMake serial
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-0712-22/+1782
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
* [svn-r29655] Added H5D_CHUNK_BTREE to the deprecated section of H5Dpublic.h.Dana Robinson2016-04-071-0/+1
| | | | Tested on: 64-bit Ubuntu 15.10 (build only, not used in existing code)
* [svn-r29644] Description:Quincey Koziol2016-04-061-1/+1
| | | | | | | | Finish correcting initializer for chunked layouts. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (to minor to require h5committest)
* [svn-r29640] Description:Quincey Koziol2016-04-051-1/+1
| | | | | | | | Add missing inializer from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (Too minor to require h5committest)
* [svn-r29638] Added new chunk index types to trace code.Dana Robinson2016-04-051-0/+34
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29635] Description:Quincey Koziol2016-04-0517-18/+3749
| | | | | | | | | Bring support for earray and v2 B-trees from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29626] Description:Quincey Koziol2016-04-043-17/+23
| | | | | | | | Revise method of invoking object flush callback. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29625] Description:Quincey Koziol2016-04-042-115/+0
| | | | | | | | Removed unused routines Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29620] Merge of r29619 from revise_chunks. Minor H5Fpublic.h comment ↵Dana Robinson2016-04-041-3/+0
| | | | | | update. Tested on: 64-bit Ubuntu 15.10 (build only, no code changes)
* [svn-r29614] Description:Quincey Koziol2016-04-034-38/+71
| | | | | | | | | Bring updated code for setting chunk size information from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29612] Description:Quincey Koziol2016-04-0317-112/+114
| | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29607] Description:Quincey Koziol2016-04-029-94/+875
| | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
* [svn-r29552] Normalization with revise_chunks in preparation for big merge.Dana Robinson2016-03-241-2/+5
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29549] Minor normalization w/ revise_chunks in preparation for big merge.Dana Robinson2016-03-243-8/+8
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r29548] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-2426-148/+153
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r29500] Made CMake header generation a normal (not advanced) optionDana Robinson2016-03-221-1/+0
| | | | | | | since users will need to set this if they check out source. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 CMake serial (CMake 3.2.2)
* [svn-r29499] Minor prettification of Java configure code and libraryDana Robinson2016-03-221-2/+3
| | | | | | | settings file. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/Java
* [svn-r29482] Switched a few Visual Studio #ifdefs to Win32Dana Robinson2016-03-212-4/+4
| | | | Tested on 64-bit Win10 w/ VS 2015 Pro
* [svn-r29474] Removed prototype enclosed in #ifdef OUT in H5Oprivate.h.Dana Robinson2016-03-181-5/+0
| | | | | | | This is unused and causes problems for a user who has OUT #defined. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29440] Minor typo fix.Dana Robinson2016-03-161-1/+1
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* [svn-r29421] Fix for HDFFV-9516.Dana Robinson2016-03-151-0/+12
| | | | | | | | Corrects a problem where H5Dget_access_plist() returns a dapl that does not contain all dapl fields. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29395] Corrected parentheses in floating-point compare macros.Dana Robinson2016-03-122-9/+10
| | | | | | | Corrected H5_EB and H5_PB macros. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, & C++
* [svn-r29372] minor error reporting fix.Mohamad Chaarawi2016-03-091-2/+2
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* [svn-r29350] Revert h5check_version change to check LT_VERS_XXXX numbers ↵Larry Knox2016-03-082-142/+3
| | | | | | | | | | | | | | | | | rather than HDF5 library version numbers. Svn revisions reverted: 29341, 29326 Branch features/h5check_version was created for further development. Files changed test/tcheck_version.c test/testcheck_version.sh.in src/H5public.h src/H5.c config/lt_vers.am bin/h5vers Tested with h5committest.new
* [svn-r29326] HDFFV-9536: Changed H5check_version() to use libtool shared ↵Albert Cheng2016-03-072-3/+142
| | | | | | | | | | | | | | | | | | | | | | | | library version numbers instead of the library version numbers. bin/h5vers: Changed to copy the shared lib version from lt_vers.am to H5public.h (Thanks to Larry who made the changes.) config/lt_vers.am: cosmetic change, nothing material. src/H5public.h: Changed by bin/h5vers. src/H5.c: Changed H5check_version() to use shared library version for compatibility checking. test/tcheck_version.c: test/testcheck_version.sh.in: Changed to use shared library version numbers instead of the HDF5 library version numbers for testing. Tested: tested in Jam (C only), platypus and osx1010dev (enable fortran and C++).
* [svn-r29279] Tidying of H5C_load_entry() before complicated merge.Dana Robinson2016-03-051-130/+64
| | | | | No significant code changes. Smoke checked on 64-bit Windows 10 with VS 2015 Pro.
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