summaryrefslogtreecommitdiffstats
path: root/src
Commit message (Collapse)AuthorAgeFilesLines
...
| * | | | | Provide an HDvasprintf implementation only if it isn't #defined. This shouldDavid Young2020-07-071-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | fix the mingw compilation issue that Allen reported.
| * | | | | Fix va_list usage in the vasprintf(3) implementation.David Young2020-07-071-2/+7
| | | | | |
| * | | | | Take pains to provide UINT64_MAX in all conditions.David Young2020-07-071-0/+6
| | | | | |
| * | | | | Fix fprintf arguments: "%p" expects a `void *` argument.David Young2020-07-071-3/+3
| | | | | |
| * | | | | Squash my changes on branch `fprintf-experiment` into one commit forDavid Young2020-07-0756-852/+445
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | reapplication to my new warnings branch, `warnings-again`. These changes are included: commit 915551b7bf64e777dd2007386ec77b1d117770da Merge: 63858c2 a8892bb Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:39:49 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9 Merge: 5c911d8 f907b51 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:33:54 2019 -0600 Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b': Oops, remove more C99 designated initializers for VS 2010 compatibility. commit 63858c22e168acaec0af8ced6641f26102cc6bb0 Merge: 20ae787 5c911d8 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:04:42 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit 5c911d8baf3ee7fe654269088eebdf07f59a8192 Merge: b8a5671 62208b0 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 16:58:27 2019 -0600 Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits) Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. ... commit 20ae7877e33931b95e8c3502b027d6c3fe94a11f Merge: 46f8c61 edd5297 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:34:09 2019 -0600 Merge remote-tracking branch 'origin/add-werror-and-squash-some' into fprintf-experiment commit 46f8c613d5117a8be5bc8385a072daa0b4262f06 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:29:00 2019 -0600 GCC really wants us to use `ll` to format `long long`, so try to make that work before any other format modifier. Seems like we're not compiling the autoconf test program with -Werror=format ? Probably should. commit eee35b8ef3759c391327cd48a9b3c56b6f8abc99 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:28:05 2019 -0600 It's hard to know just how wide an HDoff_t will be, and I don't think POSIX or C standards provide a PRI macro for it, so cast to intmax_t and format using PRIdMAX. commit 86eab12df7a89b546a38e99f8178dd2adbcb3433 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:26:25 2019 -0600 URemove some casts.se the right format string for the argument. Here and there stop casting a printf argument. commit f722f7cbecbaa99449941484b014426f62f1bed5 Merge: 58e3743 6d5ec83 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 14:44:16 2019 -0600 Merge branch 'add-werror-and-squash-some' into fprintf-experiment commit 58e3743b7faa9836606ee91798fe80dfc0040da7 Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 21:07:21 2019 -0600 Remove custom HDfprintf implementation, using the standard library's, instead. Take a swipe at repairing fprintf format strings, mainly replacing "%Hu" with "%" PRIuHSIZE, "%a" with "%" PRIuHADDR, "%Zu" with "%zu". Here and there remove an awkward cast of a printf argument to `long long` and use PRI[doux]8, PRI[doux]32, or PRI[doux]64, instead. Change occurrences of "%t" to "%s" and perform a suitable change of argument, `cond` -> `cond ? "TRUE" : "FALSE"`. Some occurrences of %Hu, %a, and %t remain, they just weren't flagged by the compiler because of #ifdef'age. commit d4366909293fa970c23512ac80e5d865d76cddbf Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 20:54:32 2019 -0600 Promote format-string warnigns to errors.
* | | | | | OESS-98 merge with clang-format changesAllen Byrne2020-09-251-22/+22
| |_|_|_|/ |/| | | |
* | | | | Merge pull request #2882 in HDFFV/hdf5 from ↵Allen Byrne2020-09-2524-5918/+6009
|\ \ \ \ \ | |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:feature/cmakeV2-clang-format to develop * commit '571a5e9250ca69adb54ef956361a5cf77059f67c': Add h5ls test plugin format target Fix manifest Add code owners file Update actions - split push/pull-request commits Change to executable Change to based on LLVM format Fix comment formatting due to tabs conversion Disable formatting for file File changes to affect formatting CMake and script changes for clang-format
| * | | | Fix comment formatting due to tabs conversionAllen Byrne2020-09-248-386/+384
| | | | |
| * | | | Disable formatting for fileAllen Byrne2020-09-051-30/+4
| | | | |
| * | | | File changes to affect formattingAllen Byrne2020-09-0423-5886/+5941
| | | | |
| * | | | CMake and script changes for clang-formatAllen Byrne2020-09-041-2/+66
| | |_|/ | |/| |
* | | | Free selection type-specific info when resetting selection iteratorsJordan Henderson2020-09-231-0/+4
| | | |
* | | | Add H5Ssel_iter_init API call to reset a selection iteratorJordan Henderson2020-09-182-0/+47
|/ / /
* | | Merge pull request #2866 in HDFFV/hdf5 from ↵Quincey Koziol2020-09-028-232/+26
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | fix_nil_collective_metadata_write to develop * commit '45021f1826f3710a3008430ddf7216bffb7068f7': Update buffer count Revert PR 405 (https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/pull-requests/405/overview) and reimplement with correct and simpler code. Revert " Checkin of fix for CGNS bug" Revert "Removed commeted out code from H5C_dump_coll_write_list()"
| * | | Update buffer countQuincey Koziol2020-08-281-1/+8
| | | |
| * | | Merge remote-tracking branch 'origin/develop' into ↵Quincey Koziol2020-08-2827-181/+201
| |\ \ \ | | | | | | | | | | | | | | | fix_nil_collective_metadata_write
| * | | | Revert PR 405 ↵Quincey Koziol2020-08-271-37/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/pull-requests/405/overview) and reimplement with correct and simpler code.
| * | | | Revert " Checkin of fix for CGNS bug"Quincey Koziol2020-08-278-207/+8
| | | | | | | | | | | | | | | | | | | | This reverts commit 94c34773ceae5b30c4afb227d0385ebf4ab6ce28.
| * | | | Revert "Removed commeted out code from H5C_dump_coll_write_list()"Quincey Koziol2020-08-271-0/+5
| | | | | | | | | | | | | | | | | | | | This reverts commit eb75dc1bb02e13902d73a36caafe763eea585d02.
* | | | | Merge pull request #2843 in HDFFV/hdf5 from vol_dataset_io_dxpl_fix to developQuincey Koziol2020-09-022-15/+13
|\ \ \ \ \ | |_|/ / / |/| | | | | | | | | | | | | | * commit '4b69577e10ed58bf6536599092390f02a49ff3f9': Bug fix to allow pass-through VOL connectors to set DXPL properties (like requesting collective operations) on dataset I/O
| * | | | Bug fix to allow pass-through VOL connectors to set DXPL properties (like ↵Quincey Koziol2020-08-252-15/+13
| |/ / / | | | | | | | | | | | | requesting collective operations) on dataset I/O
* | | | Merge branch 'develop' into develop_minorDana Robinson2020-08-277-155/+216
|\ \ \ \ | |/ / /
| * | | Simplify default use of MPI_BYTEQuincey Koziol2020-08-201-8/+3
| | | |
| * | | Don't free builtin MPI_BYTE MPI typeQuincey Koziol2020-08-201-2/+2
| | | |
| * | | Simplify code to avoid using a boolean to free MPI typesQuincey Koziol2020-08-201-7/+3
| | | |
| * | | Avoid creating MPI datatypes on ranks with 0 chunks to write'Quincey Koziol2020-08-201-53/+68
| | | |
| * | | Revert "Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to ↵Larry Knox2020-08-201-34/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | develop" This reverts commit a7a8e6451a37d1bd072c7281b432f1436795daef, reversing changes made to 30422a6b55a135ec406d484a6c66f995057e0a50.
| * | | Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to developQuincey Koziol2020-08-191-20/+34
| |\ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'ad9a2ceabe2dd9045111f8b57774948a124607b9': Only initialize the contiguous or compact I/O info struct when needed.
| | * | | Only initialize the contiguous or compact I/O info struct when needed.Quincey Koziol2020-08-171-20/+34
| | | | |
| * | | | Revert "Merge pull request #2477 in HDFFV/hdf5 from pio_update to develop"Larry Knox2020-08-184-48/+0
| | | | | | | | | | | | | | | | | | | | | | | | | This reverts commit ba80bcaff24113f438da0f40cb5b5479d4a21cc6, reversing changes made to 522ef0dd5ca1daa2b26c3fe4459ddbb1eaf6ec20.
| * | | | Merge pull request #2795 in HDFFV/hdf5 from ↵Larry Knox2020-08-181-0/+4
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr2020:hdf5_bmr2020_addrsani to develop * commit '5352b1dbc92313d91d3502dd8352352abe8749a7': Fixed typo Fix HDFFV-11101
| | * | | | Fix HDFFV-11101Binh-Minh Ribler2020-08-171-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description Added initialization to local structs in the src function H5MF_settle_raw_data_fsm() and the test function test_bt2_hdr_fd() to prevent the following error in two different occurrences: MemorySanitizer: use-of-uninitialized-value Platforms tested: Linux/64 (jelly) Linux/64 (platypus)
| * | | | | Merge pull request #2477 in HDFFV/hdf5 from pio_update to developLarry Knox2020-08-184-0/+48
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a20bf599b682bfa0a91d571a922973e0c53b524a': Don't track file offset position when using pread / pwrite.
| | * \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-08-16413-15591/+13247
| | |\ \ \ \ \
| | * \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-04-1915-28/+4085
| | |\ \ \ \ \ \
| | * \ \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-04-094-117/+113
| | |\ \ \ \ \ \ \
| | * \ \ \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-04-032-41/+92
| | |\ \ \ \ \ \ \ \
| | * | | | | | | | | Don't track file offset position when using pread / pwrite.Quincey Koziol2020-03-294-32/+80
| | | | | | | | | | |
| * | | | | | | | | | Merge pull request #2734 in HDFFV/hdf5 from ~DYOUNG/werror:cse to developLarry Knox2020-08-181-96/+106
| |\ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'fa7f8ad2f3fe509ff69dc574ddad0ae4d329ccca': Improve code readability: extract common subexpressions into temporary variables.
| | * | | | | | | | | | Improve code readability: extract common subexpressions into temporaryDavid Young2020-08-041-96/+106
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | variables.
| * | | | | | | | | | | Merge pull request #2735 in HDFFV/hdf5 from ~DYOUNG/werror:virtual-write-one ↵Larry Knox2020-08-181-1/+1
| |\ \ \ \ \ \ \ \ \ \ \ | | |_|_|_|_|_|_|_|/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '7b48e3409a8c3ba1e83c929656e84196a6dc2e6d': Fix a bug in H5D__virtual_write_one to stop an assertion from failing deep in H5Dwrite---project the *clipped* virtual selection instead of the virtual selection:
| | * | | | | | | | | | Fix a bug in H5D__virtual_write_one to stop an assertion from failingDavid Young2020-08-041-1/+1
| | |/ / / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | deep in H5Dwrite---project the *clipped* virtual selection instead of the virtual selection: assertion "((src_space)->select.num_elem) == ((dst_space)->select.num_elem)" failed: file "../../../vchoi_fork/src/H5Sselect.c", line 2617, function "H5S_select_project_intersection" with this backtrace: at /home/dyoung/plain-nbsd/src/lib/libc/gen/raise.c:48 at /home/dyoung/plain-nbsd/src/lib/libc/stdlib/abort.c:74 file=0xae9e3e80 "../../../vchoi_fork/src/H5Sselect.c", line=2617, function=0xae9e4ca0 <__func__.15686> "H5S_select_project_intersection", failedexpr=0xae9e0e54 "((src_space)->select.num_elem) == ((dst_space)->select.num_elem)") at /home/dyoung/plain-nbsd/src/lib/libc/gen/assert.c:72 dst_space=0xae26f0dc, src_intersect_space=0xae0b577c, new_space_ptr=0xbfb85fac, share_selection=true) at ../../../vchoi_fork/src/H5Sselect.c:2749 type_info=type_info@entry=0xbfb86084, file_space=file_space@entry=0xae0b577c, source_dset=0xae24741c, io_info=<optimized out>) at ../../../vchoi_fork/src/H5Dvirtual.c:2784 type_info=0xbfb86084, nelmts=256, file_space=0xae0b577c, mem_space=0xae26ec8c, fm=0xadf0401c) at ../../../vchoi_fork/src/H5Dvirtual.c:2873 mem_type_id=216172782113783837, mem_space=0xae26ec8c, file_space=0xae0b577c, buf=0xae203808) at ../../../vchoi_fork/src/H5Dio.c:780 mem_type_id=216172782113783837, mem_space_id=288230376151711754, file_space_id=288230376151711755, dxpl_id=792633534417207304, buf=0xae203808, req=0x0) at ../../../vchoi_fork/src/H5VLnative_dataset.c:206 mem_type_id=216172782113783837, mem_space_id=288230376151711754, file_space_id=288230376151711755, dxpl_id=792633534417207304, buf=0xae203808, req=0x0, cls=<optimized out>) at ../../../vchoi_fork/src/H5VLcallback.c:2152 mem_type_id=216172782113783837, mem_space_id=288230376151711754, file_space_id=288230376151711755, dxpl_id=792633534417207304, buf=0xae203808, req=0x0) at ../../../vchoi_fork/src/H5VLcallback.c:2186 mem_type_id=216172782113783837, mem_space_id=288230376151711754, file_space_id=288230376151711755, dxpl_id=792633534417207304, buf=0xae203808) at ../../../vchoi_fork/src/H5Dio.c:313
| * | | | | | | | | | Moves lock flag to H5F_shared_t and adds test.Dana Robinson2020-08-174-7/+36
| | | | | | | | | | |
| * | | | | | | | | | Adds fix for H5Fstart_swmr_write lock issueDana Robinson2020-08-172-4/+16
| | | | | | | | | | |
* | | | | | | | | | | Trivial whitespace change to H5Pencdec.cDana Robinson2020-08-171-4/+4
| | | | | | | | | | |
* | | | | | | | | | | Minor refactoring based on 1.10 normalization workDana Robinson2020-08-1724-175/+195
| | | | | | | | | | |
* | | | | | | | | | | Merge branch 'develop' into develop_minorDana Robinson2020-08-1710-787/+2306
|\ \ \ \ \ \ \ \ \ \ \ | |/ / / / / / / / / /
| * | | | | | | | | | Merge pull request #2769 in HDFFV/hdf5 from mdc_sl_opt to developJohn Mainzer2020-08-1710-787/+2306
| |\ \ \ \ \ \ \ \ \ \ | | |_|_|_|_|_|_|/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'd00bab96fb4da12a18b5de528c96469978c4c927': Minor copy edits to comments -- no code changes. Tab to space conversions. When flushing, the metadata cache attempts to flush entries in increasing address order. To facilitate this, the metadata cache needs a list of of dirty entries in increasing address order. This is implemented via a skip list of all dirty entries in the cache.
| | * | | | | | | | | Minor copy edits to comments -- no code changes.inactive/mdc_sl_optmainzer2020-08-173-3/+3
| | | | | | | | | | |
| | * | | | | | | | | Merge branch 'develop' into mdc_sl_optmainzer2020-08-15343-9882/+6640
| | |\ \ \ \ \ \ \ \ \
generated by cgit v0.12 at 2025-04-24 05:57:31 (GMT)