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| | * | | | | | | | | | Tab to space conversions.mainzer2020-08-146-461/+459
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Re-applied tab to space conversions accidentally reverted in the commit of the metadata cache skip list optimization, and performed some additional tab to space conversions in passing. Tested parallel / debug on Jelly.
| | * | | | | | | | | | Merge branch 'develop' into mdc_sl_optmainzer2020-08-1338-492/+967
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| | * | | | | | | | | | | When flushing, the metadata cache attempts to flush entries in increasingmainzer2020-08-0510-811/+2331
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | address order. To facilitate this, the metadata cache needs a list of of dirty entries in increasing address order. This is implemented via a skip list of all dirty entries in the cache. To date this skip list has been maintained at all times. However, profiling indicates that we can avoid significant overhead by constructing the skip list of dirty entries just before a flush, taking it down afterwareds, and not maintaining it during normal operation. This commit implements this optimization for both serial and parallel. Tested serial and parallel, debug and production on charis and jelly.
* | | | | | | | | | | | | Trivialities noticed while normalizing 1.10Dana Robinson2020-08-172-2/+2
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* | | | | | | | | | | | Merge pull request #2771 in HDFFV/hdf5 from ↵Binh-Minh Ribler2020-08-163-14/+91
|\ \ \ \ \ \ \ \ \ \ \ \ | |_|_|_|_|_|_|_|_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933 to develop Fixed HDFFV-10933 * commit '16349c5fddce8a74644e18d01d7ea8186aaaa255': Fixed HDFFV-10933
| * | | | | | | | | | | Fixed HDFFV-10933Binh-Minh Ribler2020-08-143-14/+91
| | |_|/ / / / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Updated the original fix by Kent Y. in commit 200a77d8c3e51663c375aafffff607ae9b438f4e - used internal functions instead of public API - moved some code into the subroutine for a cleaner look. - added test to dsets.c Platforms tested: Linux/64 (jelly)
* | | | | | | | | | | Trivialities noticed while merging things to 1.10Dana Robinson2020-08-155-28/+28
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* | | | | | | | | | Fixes naming issues in H5VM inline functionsDana Robinson2020-08-141-10/+10
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* | | | | | | | | | Merge remote-tracking branch 'origin/develop' into remove_unneeded_taggingQuincey Koziol2020-08-14343-9850/+6607
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| * \ \ \ \ \ \ \ \ \ Merge pull request #2739 in HDFFV/hdf5 from namespace_cleanup_01 to developQuincey Koziol2020-08-14342-9847/+6604
| |\ \ \ \ \ \ \ \ \ \ | | |_|/ / / / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '3f46a380e084d83a84783383bdfbbd9a443e9f27': Correct typos w/HGOTO_DONE & HGOTO_ERROR Move H5T_vlen_reclaim to package scope Switch H5VM inline routines back to single underscope and put a comment in their header about this naming Clean up private / package / static namespace issues (function naming, which header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
| | * | | | | | | | | Merge remote-tracking branch 'origin/develop' into namespace_cleanup_01Quincey Koziol2020-08-113-24/+32
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| | * | | | | | | | | | Correct typos w/HGOTO_DONE & HGOTO_ERRORQuincey Koziol2020-08-107-50/+47
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| | * | | | | | | | | | Move H5T_vlen_reclaim to package scopeQuincey Koziol2020-08-074-6/+6
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| | * | | | | | | | | | Merge remote-tracking branch 'origin/develop' into namespace_cleanup_01Quincey Koziol2020-08-0720-228/+661
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| | * | | | | | | | | | | Switch H5VM inline routines back to single underscope and put a comment in ↵Quincey Koziol2020-08-0637-153/+201
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | their header about this naming
| | * | | | | | | | | | | Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-06344-9948/+6651
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
| * | | | | | | | | | | | HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-1/+1
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| * | | | | | | | | | | | Fixes a size mismatch when copying old-style to new-style referencesDana Robinson2020-08-122-2/+2
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* | | | | | | | | | | | Merge remote-tracking branch 'origin/develop' into remove_unneeded_taggingQuincey Koziol2020-08-123-24/+32
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| * | | | | | | | | | | Merge pull request #2746 in HDFFV/hdf5 from bmr_HDFFV-10591-2 to developBinh-Minh Ribler2020-08-112-15/+21
| |\ \ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Part of HDFFV-10591 fix. * commit 'f863d4f970c2f54298a69f95bb6a15e710e1ed75': Addition to HDFFV-10591
| | * | | | | | | | | | | Addition to HDFFV-10591Binh-Minh Ribler2020-08-092-15/+21
| | | |/ / / / / / / / / | | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description Added missing parameter description and improved format. Platforms tested: Linux/64 (jelly)
| * | | | | | | | | | | Merge pull request #2655 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2020-08-101-9/+11
| |\ \ \ \ \ \ \ \ \ \ \ | | |/ / / / / / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '7c3d4402d730789173e413b48951fede5f6932f3': Fix issue in H5VL_wrap_register where datatype VOL objects are casted to H5T_t *
| | * | | | | | | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2020-08-0576-2402/+2773
| | |\ \ \ \ \ \ \ \ \ \ | | | | |_|/ / / / / / / | | | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f59bb712dec221a076728b6c582818bcf814d71a': (55 commits) Fixes indenting in tools test scripts Minor normalizations with 1.12 branch Fixed bad parens in H5trace.c Minor normalizations with hdf5_1_10 Mingw copy disabled Warnings reduction in tools Correct reference file Correct h5diff filenames Fixed typos in error messages. Updated the Java tests to deal with H5Sset_extent_none changes Fixed additional typos in tselect.c comments. Fixes typo in tselect.c Updates H5Sset_extent_none() to set H5S_NULL Only one line needed to compare Revert err file Minor normalization with 1.10 branch Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) revert error-stack enable Minor normalization with 1.10. Add release notes for tools ...
| | * | | | | | | | | | Fix issue in H5VL_wrap_register where datatype VOL objects are casted to H5T_t *Jordan Henderson2020-06-191-9/+11
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* | | | | | | | | | | | Remove redundant calls to set the metadata cache tagQuincey Koziol2020-08-087-46/+46
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* | | | | | | | | | | Merge pull request #2730 in HDFFV/hdf5 from ↵Dana Robinson2020-08-0620-243/+667
|\ \ \ \ \ \ \ \ \ \ \ | |_|_|/ / / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:file_locking_squash_2 to develop * commit '47ad0ac7237b464e939fe54dd129a151944d9706': Renames BEST-EFFORT to BEST_EFFORT for file locking env var Updated the file locking Fortran property list wrappers and added a test. Fixed missing parens in VFDs Minor change to header comments in file locking C++ changes. Squash merge of file locking fixes
| * | | | | | | | | | Renames BEST-EFFORT to BEST_EFFORT for file locking env varDana Robinson2020-08-066-6/+6
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| * | | | | | | | | | Merge branch 'develop' into file_locking_squash_2Dana Robinson2020-08-0611-188/+190
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| * | | | | | | | | | Fixed missing parens in VFDsDana Robinson2020-08-035-5/+5
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| * | | | | | | | | | Squash merge of file locking fixesDana Robinson2020-08-0320-243/+667
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* | | | | | | | | | Merge pull request #2715 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:fix_vlen_ref to ↵Jerome Soumagne2020-08-064-4/+35
|\ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'ef6db167a86e6c065d46963dbd75cd325fe83813': H5R: fix encoding of references that are part of compound types
| * | | | | | | | | | H5R: fix encoding of references that are part of compound typesJerome Soumagne2020-07-284-4/+35
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add corresponding test and some debug information
* | | | | | | | | | | Reverts H5FDsplitter.c changes so they don't conflict with Quincey'sDana Robinson2020-08-061-38/+56
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | big cleanup patch
* | | | | | | | | | | Fixes -Wnull-dereference warnings around the cache logging callsDana Robinson2020-08-061-30/+40
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* | | | | | | | | | | Fixes warnings in the splitter VFD and testsDana Robinson2020-08-061-56/+38
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* | | | | | | | | | Minor normalizations with 1.12 branchDana Robinson2020-08-0110-145/+147
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* | | | | | | | | | Fixed bad parens in H5trace.cDana Robinson2020-07-311-43/+43
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* | | | | | | | | Merge branch 'develop' into develop_minorDana Robinson2020-07-302-3/+23
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| * | | | | | | | Merge pull request #2711 in HDFFV/hdf5 from bmr-HDFFV-11120 to developBinh-Minh Ribler2020-07-291-1/+18
| |\ \ \ \ \ \ \ \ | | |/ / / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) * commit '707e30c6be1954c0027374124207e46caae68cbc': Fixed typos in error messages. Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
| | * | | | | | | Fixed typos in error messages.Binh-Minh Ribler2020-07-281-3/+3
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| | * | | | | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Binh-Minh Ribler2020-07-2223-236/+162
| | |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | bmr-HDFFV-11120
| | * | | | | | | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-07-221-1/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly) SunOS 5.11 (emu)
| * | | | | | | | | Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-281-2/+5
| | |/ / / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
* | | | | | | | | Minor normalization with 1.10 branchDana Robinson2020-07-2711-312/+220
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* | | | | | | | Merge pull request #2703 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-2023-236/+162
|\ \ \ \ \ \ \ \ | |/ / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '242459231b40a88741cbc85df4272914b5d8bed3': Minor normalization with 1.10.
| * | | | | | | Minor normalization with 1.10.Dana Robinson2020-07-2023-236/+162
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* | | | | | | | Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-171-0/+4
|\ \ \ \ \ \ \ \ | |/ / / / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| * | | | | | | Fix for jira issue HDFFV-11080:vchoi2020-07-141-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* | | | | | | | Minor normalization with 1.10Dana Robinson2020-07-174-31/+30
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* | | | | | | | H5R: fix type conversion of references within vlen typeJerome Soumagne2020-07-163-25/+66
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Update trefer.c with vlen test case
generated by cgit v0.12 at 2025-04-24 19:07:30 (GMT)