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* Merge pull request #767 in HDFFV/hdf5 from ↵Dana Robinson2017-11-111-7/+1
|\ | | | | | | | | | | | | ~DEROBINS/hdf5_der:zero_allocation_fix_develop to develop * commit '3e4f6138b60d8363c377e453d63f875775ec907a': Removed asserts from H5MM calls that conflict with stated behavior and added a test to ensure that this doesn't happen in the future.
| * Removed asserts from H5MM calls that conflict with stated behaviorDana Robinson2017-11-091-7/+1
| | | | | | | | and added a test to ensure that this doesn't happen in the future.
* | Cleaned up misc warnings in src and test.Dana Robinson2017-11-105-8/+7
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* | Merge pull request #762 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5r_cleanup to ↵Dana Robinson2017-11-0913-854/+950
|\ \ | |/ |/| | | | | | | | | develop * commit 'd0e32b545c41dcc36a69ab146b54b55e7ac9dc07': Split internal H5R functionality into H5Rint.c.
| * Split internal H5R functionality into H5Rint.c.Dana Robinson2017-11-0813-854/+950
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* | Remove tabsAllen Byrne2017-11-082-216/+144
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* | Remove tabsAllen Byrne2017-11-083-1297/+809
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* | Remove tabsAllen Byrne2017-11-081-17/+17
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* | Remove tabsAllen Byrne2017-11-081-68/+68
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* | Remove tabsAllen Byrne2017-11-081-516/+344
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* Correct usage of MPI varsAllen Byrne2017-11-011-6/+4
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* Convert to use MPI:: for linkAllen Byrne2017-11-011-2/+4
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* Correct command usageAllen Byrne2017-11-011-5/+5
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* Change MPI target properties for libraryAllen Byrne2017-11-011-2/+2
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* Add a missing declaration for testingRichard Warren2017-10-271-0/+1
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* Moved the SWMR + cache image check up before the root groupDana Robinson2017-10-211-15/+8
| | | | is constructed to avoid the special case close.
* Moved the 'cache image + SWMR' check from H5Fcreate/open to H5F_open.Dana Robinson2017-10-192-18/+18
| | | | Prep for the VOL merge.
* Merge pull request #704 in HDFFV/hdf5 from optimize_superblock_read to developRichard Warren2017-10-131-43/+90
|\ | | | | | | | | | | | | | | | | | | | | * commit '3dde6d0e32461f46630f814a2fdfbd4c813703bf': Updated the code and RELEASE.txt note per comments from John Mainzer Try to address most of the issues raised by Dana in the code review Made edits suggested by John as part of the code review Update the MANIFEST and release_docs/RELEASE files Add a test for parallel reads of independent files using MPI subgroups Edits to the file open optimization and associated test code to bring them closer to the HDF5 library's unwritten coding standards. Also bug fix to repair a hang in testphdf5. The initial coding for the superblock read optization
| * Try to address most of the issues raised by Dana in the code reviewRichard Warren2017-10-111-51/+51
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| * Add a test for parallel reads of independent files using MPI subgroupsRichard Warren2017-10-092-34/+7
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| * Edits to the file open optimization and associated testmainzer2017-10-052-11/+38
| | | | | | | | | | | | | | code to bring them closer to the HDF5 library's unwritten coding standards. Also bug fix to repair a hang in testphdf5. Tested parallel/debug on Charis and Jelly, parallel/production on Jelly.
| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Richard Warren2017-09-2811-43/+65
| |\ | | | | | | | | | optimize_superblock_read
| * | The initial coding for the superblock read optizationRichard Warren2017-09-282-2/+49
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* | | HDFFV-10297 update calls to H5Zfilter_availAllen Byrne2017-10-091-1/+2
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* | | HDFFV-10297 - fix repack individual objectsAllen Byrne2017-10-062-233/+222
| | | | | | | | | includes H5Zfilter_avail() fix
* | | Whitespace conversions and comment updatesAllen Byrne2017-10-041-535/+382
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* | | Better segregate clean & dirty LRU lists so that they are only defined whenQuincey Koziol2017-09-305-0/+16
| |/ |/| | | | | the H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS macro is defined.
* | Style cleanups and misc. bugfixes discovered during full SWMR development.Quincey Koziol2017-09-2311-43/+65
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* Restore previousAllen Byrne2017-09-191-1/+1
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* Generate headers for 1.10 should default offAllen Byrne2017-09-121-1/+1
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* Revert malloc's back to using hard-coded type for sizeofJordan Henderson2017-09-011-23/+23
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* Minor comment refactoringJordan Henderson2017-09-011-3/+4
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* Update documentationJordan Henderson2017-08-311-39/+158
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-08-246-453/+455
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '593e4038b3ab474a47e468bb3478d4ae3a6820e6': Fix for daily test failure Fix for the compilation error from the PGI compiler. Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c HDFFV-10188 force non-native type description HDFFV-10188 emu insists on printing non-native description Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return. HDFFV-10188 fix typo HDFFV-10188 add missing copy commands HDFFV-10188 Add tests and files HDFFV-10188 enable null space test HDFFV-10188 add release note HDFFV-10188 - Check for empty string first HDFFV-10188 error on NULL dataspace
| * Fix for daily test failureVailin Choi2017-08-241-1/+1
| | | | | | | | Fix for the compilation error from the PGI compiler.
| * Modifications based on comments from pull request reviewVailin Choi2017-08-234-47/+26
| | | | | | | | | | (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
| * Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 fileVailin Choi2017-08-226-415/+438
| | | | | | | | | | Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
* | Updated H5C__flush_single_entry() in H5C.c to correctmainzer2017-08-151-8/+18
| | | | | | | | | | | | | | duplicate metadata write bug observed in 1.10.1. Tested parallel/production on jelly parallel/debug & parallel/production on charis (in develop branch)
* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Jordan Henderson2017-08-1122-888/+2362
|\ \ | |/ | | | | develop
| * Moved H5PL diagnostic pragmas to comply with old gcc requirements that theyDana Robinson2017-08-022-17/+19
| | | | | | | | be outside of functions.
| * Minor tweaks in response to code review.Dana Robinson2017-08-011-6/+2
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| * Merge branch 'develop' into h5pl_commitDana Robinson2017-08-014-19/+24
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| | * Skip test in test/fheap.c when:Vailin Choi2017-07-181-1/+1
| | | | | | | | | | | | | | | | | | a) multi/split drivers and b) persisting free-space or using paged aggregation strategy because the library will fail file creation (temporary) for the above conditions.
| | * Changes made based on RFC review commentsVailin Choi2017-07-184-18/+23
| | | | | | | | | | | | Test the changes in a branch via daily testing.
| * | Major rework of H5PL package code before bringing VOL changesDana Robinson2017-07-1413-817/+1856
| |/ | | | | | | | | | | | | | | over. Brings coding standards in line with the rest of the library, enforces better software engineering principles, and makes everything more maintainable.
| * Merge pull request #596 in HDFFV/hdf5 from GreaterThan-2GB-MPIO to developRichard Warren2017-07-131-46/+458
| |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit '6a5aa46e936340ed540359290374fa909f9213a6': Added a brief outline for Large MPI-IO transfers into RELEASE.txt Fix up the ExpressMode check for skipping slow running tests. Include code fixes and additional modifications pointed out by code reviewers Commited changes to the development branch here to allow a pull request to be published Commit changes needed for pull request
| | * Include code fixes and additional modifications pointed out by code reviewersRichard Warren2017-07-101-6/+6
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| | * Commited changes to the development branch here to allow a pull request to ↵Richard Warren2017-07-051-46/+458
| | | | | | | | | | | | be published
| * | Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-104-6/+26
| |/ | | | | | | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* | Fix bug where incorrect amount of data was being read from the fileJordan Henderson2017-08-101-1/+1
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