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* [svn-r1223] SnapshotRobb Matzke1999-04-271-1/+1
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* [svn-r1217] Changes since 19990426Robb Matzke1999-04-264-10/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/commence.in ./examples/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Fixed some dependency problems in Makefiles. If the library version is updated then everything gets recompiled. ./src/H5G.c ./src/H5R.c Failure return value for object type functions is now H5G_UNKNOWN as documented. ./src/H5Shyper.c ./src/H5Spoint.c Fixed an unused argument warning. ./tools/h5debug.c Fixed a call to H5F_block_read() since the 4th argument is different now. ./tools/h5ls.c Added a space between the object name and class to make the output readable when the object name is longer than 24 characters. C
* [svn-r1216] Changes since 19990423Robb Matzke1999-04-2620-151/+160
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c Changed H5F_block_read/write() to take a file transfer property list instead of just a parallel I/O mode. This will allow us to pass additional parameters to the I/O functions without having so many arguments to worry about. This fixes a bug I introduced last Friday for parallel HDF5 ./src/H5B.c Fixed decoding of B-tree keys when iterating through the leaves of the B-tree. This fixes a bug for applications that are adding new entries to groups and also listing the groups.
* [svn-r1215] SnapshotRobb Matzke1999-04-241-1/+1
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* [svn-r1214] Changed the third parameter of H5F_mpio_write and H5F_mpio_read backAlbert Cheng1999-04-241-12/+6
| | | | | | to "H5D_transfer_t xfer_mode". H5F_mpio_write/read are i/o driver calls as low as H5F_low_write. This class of functions are invoked with the xfer_mode argument.
* [svn-r1213] Added better error message for attemping to close a default ↵Quincey Koziol1999-04-231-3/+4
| | | | property list.
* [svn-r1210] Changed parameters for function calls which figure out the ↵Quincey Koziol1999-04-234-37/+56
| | | | | | | | | | | | | | | buffer size for H5Dread/H5Dwrite to use to allow the I/O calls to break up a user's buffer into pieces that are at least as large as the sequence of bytes being written in the fastest changing dimension. Also fixed a hard-to-find bug in the hyperslab I/O routines which could cause data to be corrupted when writing out fields to compound datatype data with background preservation turned on and hyperslabs which were large enough to require two I/O passes on a hyperslab block. A pretty obscure situation, but it would be worthwhile for users to upgrade to this code in order to be certain that correct data is being written.
* [svn-r1209] Handled another signal that the Cray T3E was generating on ↵Quincey Koziol1999-04-231-2/+29
| | | | | | invalid memory accesses.
* [svn-r1208] Changed the I/O loops for H5Dwrite/H5Dread to break up a user's ↵Quincey Koziol1999-04-231-30/+43
| | | | | | | buffer into pieces that are at least as long as the smallest sequence to write/read in the fastest changing dimension.
* [svn-r1204] Changes since 19990415Robb Matzke1999-04-2322-199/+617
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/depend.in Fixed automatic dependencies. We were storing dependencies for *.o files instead of *.lo files after shared libraries were added. ./config/gnu-flags ./config/linux-gnulibc1 Moved `-march=pentiumpro -mcpu=pentiumpro -malign-double' from the linux file to this file and caused it to depend on the CPU name. This fixes one of Elena's bugs. ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Gnode.c ./src/H5P.c ./src/H5RA.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Tpublic.h ./test/istore.c Added an H5Dget_storage_size() function that reports the amount of storage allocated for raw data in a dataset. Changed H5D_xfer_* to H5F_xfer_* because these properties are more general than datasets. This also allows some of the lower-level I/O functions to get this information easier. ./src/H5S.c ./src/H5Sall.c Added two new functions H5S_all_read() and H5S_all_write() which are optimizations that copy data directly between file and memory without having to go through the scatter gather step. This knocks quite a bit of time off the I/O and reading/writing entire datasets is a fairly common operation. ./tools/h5ls.c Reports the logical size of data, the allocated size of data, and the percent utilization. ./MANIFEST Removed old pablo files, added new files. Snapshots should now start to work again. ./src/H5D.c ./src/H5Fmpio.c Removed two warnings signed vs. unsigned comparisons and check for overflow.
* [svn-r1203] SnapshotRobb Matzke1999-04-231-1/+1
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* [svn-r1202] SnapshotRobb Matzke1999-04-221-1/+1
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* [svn-r1200] SnapshotRobb Matzke1999-04-211-1/+1
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* [svn-r1198] SnapshotRobb Matzke1999-04-201-1/+1
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* [svn-r1195] SnapshotRobb Matzke1999-04-191-1/+1
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* [svn-r1194] SnapshotRobb Matzke1999-04-181-1/+1
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* [svn-r1193] SnapshotRobb Matzke1999-04-171-1/+1
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* [svn-r1186] SnapshotRobb Matzke1999-04-161-1/+1
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* [svn-r1184] Changes since 19990402Robb Matzke1999-04-1542-441/+439
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/commence.in ./config/conclude.in ./test/Makefile.in ./tools/Makefile.in Fixed so private libraries are not installed publicly. The installation directories `bin', `include', and `lib' are created mode 755. ./src/H5.c ./src/H5A.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5R.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Vprivate.h ./src/H5Z.c ./src/H5detect.c ./src/H5private.h ./test/chunk.c ./test/dsets.c ./test/dtypes.c ./test/h5test.c ./test/overhead.c ./test/ragged.c ./test/tattr.c ./tools/h5dump.c ./tools/h5findshd.c ./tools/h5ls.c Changed `__unused__' to `UNUSED' to fix a conflict with GNU header files. ./src/H5Tpkg.h ./test/h5test.h Removed __unused__ from forward function declarations. ./src/H5P.c Removed a comment about restrictions for the type conversion temporary buffers. Thanks to Quincey, the comment no longer applied. ./src/H5T.c Relaxed the H5Tpack() a little so it would pack compound data structures that had non-transient atomic members. ./tools/h5ls.c Added a `-g' (or `--group') flag that causes information to be printed about the specified group instead of the group's contents. (sort of like Unix's `ls -d'). The `-g' can be used in combination with `-r' to print information about the group and its contents.
* [svn-r1183] SnapshotRobb Matzke1999-04-151-1/+1
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* [svn-r1182] Changed name of PABLO Mask to simplify automatic definitions.Dan Wells1999-04-1418-18/+18
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* [svn-r1178] SnapshotRobb Matzke1999-04-091-1/+1
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* [svn-r1173] SnapshotRobb Matzke1999-04-031-1/+1
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* [svn-r1171] Changes since 19990330Robb Matzke1999-04-024-20/+24
| | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5A.c ./src/H5D.c The `bkg' buffers are zeroed before calling the type conversion function. This fixes a problem where reading a file compound data structure into memory results in garbage between the members. ./src/H5I.c Fixed H5I_clear_group() so it removes entries even when a free callback is not registered. This fixes fixes an `infinite loop closing library' warning message. ./src/H5.c Added ellipses to the end of the infinite loop message.
* [svn-r1170] SnapshotRobb Matzke1999-03-311-1/+1
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* [svn-r1169] ./configure.inRobb Matzke1999-03-3022-467/+618
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5D.c ./src/H5O.c Removed H5AC, H5B, and H5T from the default list of packages to debug (because they're pretty expensive debugging), and added H5O. Also fixed a bug for undefined variable in H5D when H5S debugging is turned on but H5T debugging is turned off. ./config/conclude.in Fixed installation of header files for building in a directory other than the source directory. This fixes a bug where H5config.h wasn't being installed. ./src/H5.c ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Tprivate.h ./src/H5Z.c ./src/H5detect.c ./src/H5private.h Changed the way the library shuts down again. Now it handles cycles between packages and isn't so sensitive to dependencies between packages. A package might shut down only to be restarted to process a request from some other package being shut down. Loops are detected after 100 iteractions and the shutdown is aborted with a message on standard error. This also makes it a lot easier to debug. ./src/H5A.c Fixed H5A_write() and H5A_read() so they pass a non-null background buffer to the conversion functions. This is necessary when an attribute has a compound data type. ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c Reindented new Win32 stuff. ./src/H5Odtype.c Fixed a bug when enumeration types are used in a compound data type. The byte pointer wasn't incremented after the type information was written. ./tools/h5ls.c Compound data types display their total size because it's not always obvious from looking at the members. Scalar attributes show their space as `scalar' instead of `{}'. The index value is not printed for attributes that have only a few values. Instead the word `Data:' is printed on the first line of attribute data. Named types display their data type only if verbose output was requested.
* [svn-r1167] SnapshotRobb Matzke1999-03-301-1/+1
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* [svn-r1166] Fixed logic bug which was making all attributes read as zerosQuincey Koziol1999-03-291-0/+1
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* [svn-r1165] SnapshotRobb Matzke1999-03-251-1/+1
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* [svn-r1164] Patrick Lu1999-03-241-0/+11
| | | | added a #define SIGBUS SIGILL is SIGBUS not defined
* [svn-r1162] SnapshotRobb Matzke1999-03-241-1/+1
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* [svn-r1161] Modified H5Aread to fill the user's buffer with zero's (the fill ↵Quincey Koziol1999-03-231-30/+36
| | | | | | | value for uninitialized attributes) if they read the attribute before any data is written to it or it's stored on disk.
* [svn-r1160] SnapshotRobb Matzke1999-03-231-1/+1
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* [svn-r1159] Changed cast of the reference selection type into a decode, this ↵Quincey Koziol1999-03-231-3/+5
| | | | | | should fix the reference test problems on big-endian machines.
* [svn-r1158] Patrick Lu1999-03-221-1/+7
| | | | put a free in the H5F_close to free up the memory I used for the path
* [svn-r1157] Patrick Lu1999-03-222-13/+81
| | | | | in the H5F_low_access() and the H5F_sec2_open() functions I put code in here so we can figure out the path of the file and store it in the search_t struct
* [svn-r1156] Patrick Lu1999-03-221-4/+15
| | | | | made a change to compare files function. for NT we look at the path names of the 2 objects.
* [svn-r1155] Patrick Lu1999-03-221-0/+1
| | | | | | added a new member to the H5F_search_t struct to store the path name we needed this to be able to tell if a file is already open since NT does not use the inode.
* [svn-r1154] Changes since 19990322Robb Matzke1999-03-221-1/+1
| | | | | | | | | | | | | ---------------------- ./configure.in ./configure [REGENERATED] ./config/commence.in A few tweaks to the makefile rules for rebuilding makefiles. ./src/H5detect.c Fixed a really stupid mistake: resetting the signal handler after a longjmp(). This should fix Bob's SIGBUS on Solaris.
* [svn-r1153] SnapshotRobb Matzke1999-03-201-1/+1
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* [svn-r1151] Changes since 19990318Robb Matzke1999-03-194-383/+1110
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./config/commence.in ./config/conclude.in ./config/dec-osf4.x ./config/depend.in ./config/freebsd ./config/linux-gnu ./config/linux-gnulibc1 ./config/linux-gnulibc2 ./config/solaris2.x ./examples/Makefile.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in ./tools/testh5dump.sh Changes that allow hdf5 to be configured and compiled in a directory other than the source directory. This is especially useful if you want to concurrently compile with different compilers and/or compile flags, or if the hdf5 source is on read-only media like a CDROM. The changes were surprisingly easy ;-) Here's what you can do now... $ mkdir /tmp/build1 # or something $ cd /tmp/build1 $ /cdrom/hdf5/configure # where ever the source is $ make Paul, you'll have to change the testh5toh4 script similar to the way I changed testh5dump.sh. I started working on it but then gave up because of a number of problems: (1) I had to comment out all the tests that let h5toh4 choose the output file name because it always tried to put the output file in the same directory as the input file, (2) if path names are used during the h4 dump then they interfere with the diff. The test works fine when run in the source directory, but try this instead: $ gunzip <hdf5-1.1.67.tar.gz |tar xf - $ chmod -R ugo-w hdf5-1.1.67 $ mkdir build $ cd build $ ../hdf5-1.1.67/configure $ make check Dan, I didn't modify the pablo/Makefile.in because I have no way to test it. I think all you need to do is add a couple lines before the @COMMENCE@ line and add a couple search directories for header files. Anyway, it seems like almost an exact duplicate of the src/Makefile.in, so it shouldn't be a problem... ./Makefile.in Removes a few more temporary files during make clean and distclean. ./configure.in I fixed the creation of the time-stamp files so that the initial make doesn't have to regenerated all the makefiles (only GNU make users will see any change). ./src/H5R.c Changed a return type from `intn' to `int' for an API function. ./src/H5detect.c Added the volatile qualifier to a couple more variables. ./tools/h5tools.c Fixed a compiler warning about an unused local. ./tools/h5toh4.c Initialized `optind' to 1 because it's zero on my system. It should always be one on a unix system. ./tools/testh5toh4 Redirected "broken pipe" messages to /dev/null so outut is formatted correctly.
* [svn-r1150] SnapshotRobb Matzke1999-03-191-1/+1
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* [svn-r1149] ./configure.inRobb Matzke1999-03-184-816/+123
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h Temporarily commented out the code that tries to link a simple MPI-IO application because I'm not sure how to pass $LDFLAGS and $LIBS to the compiler. Removed the `--enable-parallel=ibm' switch because the library we link with is either -lmpcc or -lmpcc_r but not both. The only way to tell is to see what compiler was specified (mpcc or mpcc_r) but if that compiler is specified then we don't need any libraries (the compiler script supplies them). That leaves just two choices: the user must use a compiler script: CC=mpcc ./configure or the user must state which library is desired: LDFLAGS='-lmpcc' ./configure --enable-parallel Checks for <setjmp.h>, longjmp(), and signal(). We don't check for setjmp() because it could be a macro (in fact, Posix requires it to be a macro) and if longjmp() is present then setjmp() is probably present too ;-) ./src/H5detect.c The alignment detection loop uses SIGBUS and setjmp/longjmp instead of fork/wait in order to get around bugs with forking in conjunction with mpich. This hasn't been tested on the SP-2 yet but it does work on the DEC Alpha. ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Changed the order that libraries are linked so -lhdf5 is always before $LDFLAGS.
* [svn-r1148] SnapshotRobb Matzke1999-03-181-1/+1
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* [svn-r1146] Added support for object references to named datatypes.Quincey Koziol1999-03-183-4/+52
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* [svn-r1144] Added support for object references to groups.Quincey Koziol1999-03-183-12/+73
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* [svn-r1143] SnapshotRobb Matzke1999-03-161-1/+1
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* [svn-r1141] SnapshotRobb Matzke1999-03-141-1/+1
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* [svn-r1139] Added code for H5Rget_object_typeQuincey Koziol1999-03-123-26/+138
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* [svn-r1138] Changes since 19990304Robb Matzke1999-03-125-237/+283
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/*-aix4.* [REMOVED] ./config/*-aix4.x [NEW] ./config/solaris2.5 [REMOVED] ./config/solaris2.x [NEW] ./configure.in ./configure [REGENERATED] ./MANIFEST Changed the names of the IBM-SP2 config files by replacing the minor version numbers with an `x'. The solaris config warns about old versions of gcc. The RUNSERIAL value is set to the empty string by default. The config/* file (or user) can override it by setting it to some other value. The `--enable-parallel' with no flags turns on the HAVE_PARALLEL constant in the source code but doesn't add any MPI or MPI-IO libraries to the link line. If we are compiling for parallel then configure checks that we can actually link a very simple program. This has the benefit of detecting config errors before we waste time compiling the entire library. Configure recognizes `mpcc_r' as a parallel compiler. ./src/H5A.c ./src/H5Apublic.c Fixed some compiler warnings. Changed the return type of H5Aget_name() from hssize_t to ssize_t because the name can never be larger then memory.
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