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* [svn-r9582] Purpose:Quincey Koziol2004-11-276-34/+58
| | | | | | | | | | | | | | | | | | | | Add new internal data structure Description: Add an implementation of skip lists to the library (see comment in src/H5SL.c for references to the papers describing them) as a potential replacement for our current threaded, balanced binary tree container. Skip lists are much simpler to implement and should be faster to use. Also, added new error codes to release branch, so bump the minor version number to indicate that the library is no longer perfectly compatible with the 1.6.3 release. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require further testing (the skip lists aren't actually used by any library code yet)
* [svn-r9581] This commit was manufactured by cvs2svn to create branch 'hdf5_1_6'.cvs2svn2004-11-272-0/+781
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* [svn-r9564] Purpose:Quincey Koziol2004-11-233-37/+132
| | | | | | | | | | | | | Code optimization Description: Change how default allocation time is handled internally to the library, to avoid some performance issues with property lists. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9560] Purpose:Quincey Koziol2004-11-224-25/+33
| | | | | | | | | | | | | Code optimization Description: Switch a few more malloc/free pairs over to using internal free list code, to avoid abusing system memory allocator as badly. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9557] Purpose:Quincey Koziol2004-11-2224-370/+403
| | | | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Improve ADF/CGNS benchmark by reducing the number of internal attribute copies made during creations, opens and writes. Added new H5O_iterate() routine for iterating through messages of a certain type in the object header (attributes are the only message currently that can have multiple instances in the object header). Cross-pollinated various minor code cleanups to reduce diffs between branches. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9553] Purpose:Quincey Koziol2004-11-193-45/+80
| | | | | | | | | | | | | | | | | Code optimization Description: Avoid making as many copies of attribute information. Also, be smarter about which properties we've seen before when copying and closing property lists. Fix memory leak of attribute data structures. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9551] Purpose:Quincey Koziol2004-11-182-5/+13
| | | | | | | | | | | | | Code optimization Description: Rework & move around some of the macros for querying balanced properties of nodes to speed up tree balancing code. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9541] Purpose:Quincey Koziol2004-11-182-5/+15
| | | | | | | | | | | | | | Code optimization Description: Change threaded, balanced binary tree insertion routine to use more efficient "fast" search routine when trees with "fast compare" routines have objects inserted into them. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9538] Purpose:Quincey Koziol2004-11-176-119/+216
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup & optimizations Description: Clean up some of the code in attributes to avoid allocating memory and performing type conversions when the conversion is a noop. Avoid memory allocations of attribute data structures by switching to use library's free list memory allocator routines. Avoid memory allocations of object header continuation data structures by switching to use library's free list memory allocator routines. Rearrange threaded, balanced binary tree macros slightly to avoid some overhead. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9537] Purpose:Quincey Koziol2004-11-171-110/+418
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup & optimizations Description: Clean up some of the code in attributes to avoid allocating memory and performing type conversions when the conversion is a noop. Avoid memory allocations of attribute data structures by switching to use library's free list memory allocator routines. Avoid memory allocations of object header continuation data structures by switching to use library's free list memory allocator routines. Rearrange threaded, balanced binary tree macros slightly to avoid some overhead. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9528] Snapshot version 1.6 release 3 (post1)HDF Admin2004-11-151-2/+2
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* [svn-r9517] Purpose:Quincey Koziol2004-11-101-2/+5
| | | | | | | | | | | | | | Bug fix Description: Fix code to allow --debug-enable=all option to work correctly. Solution: Update some ifdef'ed code with recent changes. Platforms tested: Linux 2.4 (heping) w/--enable-debug=all Too minor to require h5committest
* [svn-r9479] Purpose:MuQun Yang2004-10-281-2/+32
| | | | | | | | | | | | | | | | | To help Fortran DLL supports with DEC Fortran 6.6c. Description: Need to export and import more symbols to make Fortran DLL work. Solution: Separate C and Fortran for both library and test. Platforms tested: VC 6.0 on windows XP + DEC fortran 6.6c Linux 2.4 (gcc+ pgf90) (no need for h5committest since the change is trivial) Misc. update:
* [svn-r9478] Purpose:Quincey Koziol2004-10-281-1/+1
| | | | | | | | | | | Bug fix Description: Correct reference to FPHDF5 macro - FPHDF5 is not supported in the 1.6 branch. Platforms tested: None, just eyeballed (very trivial).
* [svn-r9470] Purpose:Quincey Koziol2004-10-2715-242/+176
| | | | | | | | | | | | | Code cleanup Description: Clear up some inconsistencies, inefficiencies and possible errors between the release and development branch. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Linux 2.4 (heping) w/C++ & FORTRAN
* [svn-r9460] Purpose:Quincey Koziol2004-10-2622-1661/+1311
| | | | | | | | | | | | Code cleanup & optimization Description: Bring back new metadata cache code from development branch. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Linux 2.4 (heping) w/C++ & FORTRAN
* [svn-r9456] Snapshot version 1.6 release 3 (post0)HDF Admin2004-10-251-2/+2
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* [svn-r9434] Purpose:Quincey Koziol2004-10-191-1/+4
| | | | | | | | | | | | | | | | Bug fix Description: Fix core dump when flushing a file with a newly created attribute which hasn't had a value written to it still open. Solution: Write the attribute fill value when appropriate. Platforms tested: FreeBSd 4.10 (sleipnir) Linux 2.4 (verbena) Solaris 2.7 (arabica)
* [svn-r9414] Purpose:Quincey Koziol2004-10-121-2/+2
| | | | | | | | | | | Code cleanup Description: Fix a couple of return values from NULL -> FAIL. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9403] Purpose:Quincey Koziol2004-10-129-95/+95
| | | | | | | | | | | | | | | | | Code cleanup Description: Further diff reductions against development branch, in preparation for merge of new metadata cache code. Solution: Change 'dirty' field in metadata cache info struct (H5AC_info_t) to match development branch 'is_dirty' name. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Linux 2.4 (verbena) w/FORTRAN
* [svn-r9402] Purpose:Quincey Koziol2004-10-1211-705/+230
| | | | | | | | | | | | | | | | | Port development branch changes to release branch. Description: Initial step in bringing changes to support new metadata cache from the development branch to the release branch. Solution: This checkin just aligns the H5AC* API changes, as well as bringing back various minor code cleanups, etc. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Linux 2.4 (verbena) w/FORTRAN
* [svn-r9401] This commit was manufactured by cvs2svn to create branch 'hdf5_1_6'.cvs2svn2004-10-121-0/+173
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* [svn-r9378] Purpose:Quincey Koziol2004-10-061-2/+2
| | | | | | | | | | | Typo fix Description: Fix another typo with mis-merged info. Platforms tested: Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9377] Purpose:Quincey Koziol2004-10-061-1/+1
| | | | | | | | | | | Typo fix Description: Correct minor error value to something appropriate for the release branch. Platforms tested: FreeBSD 4.10 (sleipnir) too minor to require h5committest
* [svn-r9376] Purpose:Quincey Koziol2004-10-063-81/+109
| | | | | | | | | | | | | Bug fix Description: Close a couple of memory leaks Platforms tested: FreeBSD 4.10 (sleipnir) Solaris 2.7 (arabica) w/purify Linux 2.4 (verbena) too minor for h5committest
* [svn-r9367] Purpose: feature changeRaymond Lu2004-10-051-2/+4
| | | | | | | Description: Prevent create datatype of size 0 Platforms tested: heping(simple change)
* [svn-r9365] Raymond Lu2004-10-051-5/+5
| | | | | | | | | | | Purpose: change feature Description: Back up supporting bitfield and time datatypes in H5Tget_native_type. Leave it for future support. Simply returns "not supported" error message for now. Platforms tested: h5committest Misc. update: RELEASE.txt
* [svn-r9359] Purpose:Quincey Koziol2004-10-045-27/+26
| | | | | | | | | | | | | | | Bug fix Description: Relax restrictions on parallel I/O to allow compressed, chunked datasets to be read in parallel (collective access will be degraded to independent access, but will retrieve the information still). Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9356] Purpose:Quincey Koziol2004-10-0118-1768/+775
| | | | | | | | | | | | | | | | Bug fix & code cleanup Description: More dataset cleanups to get to a point where we can fix the chunked I/O bug. Also fix a couple of errors in the recent file object resurrection changes which should hopefully address the recent daily test failres (H5T.c) Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) h5committest
* [svn-r9355] This commit was manufactured by cvs2svn to create branch 'hdf5_1_6'.cvs2svn2004-10-014-0/+5666
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* [svn-r9351] Raymond Lu2004-10-013-9/+31
| | | | | | | | | | | | | | Purpose: enhanced feature Description: enable size adjustment for compound datatype. The size can be increased and decreased(as long as the members are not cut). Solution: mainly check if any member is being cut when decreasing the size. Others are simply taking out the assertion against 0 size. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9343] Purpose:Quincey Koziol2004-09-3018-1374/+674
| | | | | | | | | | | | | | | | Bug fix/code cleanup Description: Clean up raw data I/O code to bundle the I/O parameters (dataset, DXPL ID, etc) into a single struct to pass around through the dataset I/O routines, since they are always passed together, until very near the bottom of the I/O stack. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9341] Purpose:Quincey Koziol2004-09-302-4/+4
| | | | | | | | | | | Bug fix Description: Correct a couple of typos in the recent object resurrection code. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9335] James Laird2004-09-293-4/+4
| | | | | | | | | | | | Purpose: Bug fix Description: Fix bugs found by daily tests. Platforms tested: copper
* [svn-r9334] James Laird2004-09-2841-2131/+2446
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Feature Description: (Same change to release branch) Datatypes and groups now use H5FO "file object" code that was previously only used by datasets. These objects will hold a file open if the file is closed but they have not yet been closed. If these objects are unlinked then relinked, they will not be destroyed. If they are opened twice (even by two different names), both IDs will "see" changes made to the object using the other ID. When an object is opened using two different names (e.g., if a dataset was opened under one name, then mounted and opened under its new name), calling H5Iget_name() on a given hid_t will return the name used to open that hid_t, not the current name of the object (this is a feature, and a change from the previous behavior of datasets). Solution: Used H5FO code that was already in place for datasets. Broke H5D_t's, H5T_t's, and H5G_t's into a "shared" struct and a private struct. The shared structs (H5D_shared_t, etc.) hold the object's information and are used by all IDs that point to a given object in the file. The private structs are pointed to by the hid_t and contain the object's group entry information (including its name) and a pointer to the shared struct for that object. This changed the naming of structs throughout the library (e.g., datatype->size is now datatype->shared->size). I added an updated H5Tinit.c to windows.zip. Platforms tested: Visual Studio 7, sleipnir, arabica, verbena Misc. update:
* [svn-r9331] Purpose:Quincey Koziol2004-09-281-4/+3
| | | | | | | | | | | Bug fix Description: Another attempt to fix the address overflow in the core VFL, hopefully one that works on 64-bit platforms. Platforms tested: AIX 5.1 (copper)
* [svn-r9328] Purpose:Quincey Koziol2004-09-282-12/+1
| | | | | | | | | | | | | Bug fix. Description: Fix off-by-one error in Core VFL driver which would cause spurious address or size overflow errors when an odd valued address or size was checked. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (heping) Solaris 2.7 (arabica)
* [svn-r9323] Purpose:Quincey Koziol2004-09-271-66/+104
| | | | | | | | | | | | | Bug fix Description: Fix situation where deleting a chunked datasets with B-tree nodes that weren't in the metadata cache would die with a core dump. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (heping) Solaris 2.7 (arabica)
* [svn-r9313] Purpose:Quincey Koziol2004-09-231-3/+4
| | | | | | | | | | Bug fix. Description: Allow I/O to occur on 0 element selections. Platforms tested: h5committest
* [svn-r9311] Purpose:Quincey Koziol2004-09-221-0/+36
| | | | | | | | | | | | | | Code optimization Description: Avoid performing a check on the number of objects in a group (which currently involves iterating over all entries in the group's B-tree) before calling H5G_get_obj<foo>_by_idx. Instead, just have H5G_get_obj<foo>_by_idx() notice when you've walked off the end and return fail then. Platforms tested: FreeBSD 4.10 (sleipnir) h5committest
* [svn-r9308] Purpose: Post 1.6.3 release maintenanceElena Pourmal2004-09-221-2/+2
| | | | | | | | | | Description: Changed version number to 1.6.3-post0 Solution: ran bin/h5vers script on eirene Platforms tested: Misc. update:
* [svn-r9304] Purpose: Release maintenancehdf5-1_6_3Elena Pourmal2004-09-221-2/+2
| | | | | | | | | | Description: I changed the version number to 1.6.3 Solution: Ran bin/h5vers -s 1.6.3 on eirene Platforms tested: Misc. update:
* [svn-r9263] Purpose: Maintenance for 1.6.3 third round of testingElena Pourmal2004-09-151-2/+2
| | | | | | | | | | | Description: Created test tar ball and changed version to 1.6.3-pre4 using bin/h5vers script on eirene Solution: Platforms tested: Misc. update:
* [svn-r9260] Purpose:Quincey Koziol2004-09-151-1/+1
| | | | | | | | | | | | Bug fix Description: Correct leftover issue from recent changes to dataset region reference which occurred when 1.4 backward compatibility is turned on. Platforms tested: FreeBSD 4.10 (sleipnir) w/1.4 compat Configuration not tested by h5committest
* [svn-r9251] Purpose:Quincey Koziol2004-09-143-18/+13
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Correct typedef for dataset region references to avoid struct alignment issues on Crays. Solution: Change the typedef for hdset_reg_ref_t from a struct to an array of unsigned char's of the correct size and propagate the appropriate adjustments around the code. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (verbena) w/fortran Cray T90 (subzero) w/fortran Cray SV1 (wind) w/fortran & parallel Cray T3E (cyclone) w/fortran & parallel
* [svn-r9236] Purpose: Maintenance for the second round of testingElena Pourmal2004-09-091-2/+2
| | | | | | | | | | Description: I created a tar ball and changed version to 1.6.3-pre3 Solution: run bin/h5vers on eirene Platforms tested: eirene Misc. update:
* [svn-r9217] Purpose:Pedro Vicente Nunes2004-09-071-14/+16
| | | | | | | | | | | | | | | | bug fix Description: The H5O_mtime_decode function was not handling properly the case for the Code Warrior compiler Solution: Platforms tested: Code Warrior Misc. update:
* [svn-r9210] Purpose:Pedro Vicente Nunes2004-09-071-103/+112
| | | | | | | | | | | | | | | | | | | | | | | | | | | | bug fix Description: on the Cray SV1 an INT type was wrongly converted to a SHORT type by the get_native_integer function Choose the type based on the precision; this is to support cases like the Cray SV1, where the size of short is 8 but precision is 32 (e.g an INT (size 8, prec 64) would be converted to a SHORT (size 8, prec 32) if the size was the deciding factor) Solution: Platforms tested: linux solaris aix cray sv1 Misc. update:
* [svn-r9205] Purpose:Pedro Vicente Nunes2004-09-031-1/+1
| | | | | | | | | | | | updated some commnents regarding the latest cray bug fix Description: Solution: Platforms tested: Misc. update:
* [svn-r9201] Purpose:Pedro Vicente Nunes2004-09-031-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | bug fix Description: the dataset region reference data was not portable between the Cray T3E and other machines Solution: this was due to the fact that the buffer to store the heap ID and index was using a sizeof(int) for its size 4 is used instead of sizeof(int) to permit portability between the Crays and other machines (the heap ID is always encoded as an int32 anyway) Platforms tested: Cray T3E (read data from linux) linux solaris aix Misc. update:
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