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* [svn-r1806] * 1999-11-02Robb Matzke1999-11-021-1519/+1519
| | | | | | | | | | | | | ** bin/rpmsync ** config/depend1.in Tweaks for versions of `make' that can't search directories. ** examples/Dependencies ** src/Dependencies ** test/Dependencies ** testpar/Dependencies ** tools/Dependencies Regenerated all these with more complete path names.
* [svn-r1802] Changes since 19991019Robb Matzke1999-11-0110-116/+271
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./configure.in ./configure [REGENERATED] Added more checking for `make' features. ./Makefile.in ./doc/Makefile.in ./doc/html/Makefile.in ./doc/html/Tutor/Makefile.in ./examples/Makefile.in ./pablo/Makefile.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in ./config/commence.in ./config/conclude.in ./config/depend.in [REMOVED] ./config/depend1.in [NEW] ./config/depend2.in [NEW] ./config/depend3.in [NEW] ./config/depend4.in [NEW] ./config/dependN.in [NEW] The directory search stuff was moved into commence.in, thereby shortening the Makefile.in prologues. ./doc/html/Dependencies [NEW] ./doc/html/Tutor/Dependencies [NEW] ./examples/Dependencies [NEW] ./src/Dependencies [NEW] ./test/Dependencies [NEW] ./testpar/Dependencies [NEW] ./tools/Dependencies [NEW] The `.distdep' files were all renamed to `Dependencies' to make them more obvious. They are required (but may be empty) in every directory that has a Makefile.in that ends with @CONCLUDE@ (you'll get an obvious error from make if you forgot to create one). ./bin/trace ./src/H5.c Added H5E_major_t and H5E_minor_t although tracing only prints the integer value. ./src/H5E.c ./src/H5Epublic.h Added tracing information. ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDgass.c ./src/H5FDmpio.c ./src/H5FDsec2.c ./src/H5FDstdio.c Fixed places where FUNC_LEAVE() evaluated it's argument more than once. Added tracing information. Wrapped long lines. ./config/gnu-flags Fixed a syntax error when we don't have a gnu compiler.
* [svn-r1799] got rid of the include of the private header filePatrick Lu1999-10-291-2/+7
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* [svn-r1797] included the h5private.h file to get a definition of F_OK andPatrick Lu1999-10-271-2/+3
| | | | got rid of the #error for WIN32
* [svn-r1795] Removed an extra return statement resulted from the previous ↵Albert Cheng1999-10-261-1/+1
| | | | changes.
* [svn-r1794] Snapshot version 1.3 release 3Albert Cheng1999-10-262-82/+82
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* [svn-r1793] Corrected a typo.Albert Cheng1999-10-261-1/+1
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* [svn-r1788] Converted all the VFL drivers except for the stdio and multi ↵Quincey Koziol1999-10-238-675/+1166
| | | | | | drivers back into the "internal" HDF5 coding standard.
* [svn-r1787] Removed CVS merged warnings stuff that got check in by mistake.Albert Cheng1999-10-231-5/+0
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* [svn-r1785] Added stdio VFL driver, which uses the new public H5E calls.Quincey Koziol1999-10-206-12/+745
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* [svn-r1783] Added public H5Epush... routines and macros.Quincey Koziol1999-10-202-0/+55
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* [svn-r1769] Snapshot version 1.3 release 2Albert Cheng1999-10-161-1/+1
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* [svn-r1768] Deriverd from configure.in.Albert Cheng1999-10-151-3/+0
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* [svn-r1759] Corrected a few more compiler warnings.Quincey Koziol1999-10-153-9/+9
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* [svn-r1753] Changes since 19991007Robb Matzke1999-10-158-29/+132
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./src/H5config.h.in [REGENERATED] The /usr/ncsa/{include,lib} directories are only added if they actually exist. This fixes a warning on some systems. Checks for the <pdb.h> header file and also for either the PDB or Silo library, and if found prepares to compile the pdb2hdf program. ./config/distdep Relative path names for include files are changed to base names since the makefile contains the logic for searching and since it's likely that building the .distdep files happed from a location other than where they would be used in the file system. ./config/conclude.in Fixed shell errors when `for' loops iterate over nothing for the `uninstall' target. ./src/H5D.c ./src/H5Oefl.c File names for the external files are added to the heap when the dataset is created instead of when the object header is written. This fixes a rare infinite recursion bug. ./src/H5FD.c ./src/H5FDpublic.h Optimization to the free list causes H5FD_alloc() usage to go from >10 seconds to <0.4 second for one example (converting a 30MB equation of state file from PDB to HDF5 format). The optimization is to simply keep track of the largest item in the free list and not search the free list when the largest item is not big enough to satisfy the request. ./src/H5FDcore.c ./src/H5FDcore.h ./test/h5test.c If the `backing_store' property is true then a flush causes the entire contents of memory to be written to the specified file. This is in preparation for the ASCI/red optimizations and is currently tested by the pdb2hdf `--cached' switch. ./src/H5Odtypes.c Wrapped three long lines. ./tools/Makefile.in ./tools/pdb2hdf.c [NEW] A PDB-to-HDF5 translator. It only translates meta data -- the resulting HDF5 points into the PDB file for the raw data.
* [svn-r1739] Cleaned up some warnings from the HP compiler.Quincey Koziol1999-10-092-2/+1
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* [svn-r1732] Changes since 19991007Robb Matzke1999-10-075-23/+22
| | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5FDcore.c Includes private headers instead of public in order to use the `UNUSED' macro. ./src/H5FDpublic.h Includes H5public.h just in case. ./src/H5P.c Removed two unused variables in H5P_copy() ./src/H5FDgass.h Fixed a C++ comment after a `#endif' ./src/Makefile.in The H5FDgass.h file is public and must be installed in order for applications to be able to use HDF5. ./tools/h5tools.c Removed an unused variable.
* [svn-r1731] Snapshot version 1.3 release 1Albert Cheng1999-10-061-1/+1
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* [svn-r1729] Put in "alias" for old H5P_DATASET_XFER to map it to the new ↵Quincey Koziol1999-10-061-0/+4
| | | | | | H5P_DATA_XFER. This should eventually be deprecated and the alias removed.
* [svn-r1728] Corrected two bugs in VL types, one in which the wrong length of ↵Quincey Koziol1999-10-061-4/+8
| | | | | | | the buffer needed for the object header was being computed and another in incorrectly decoding the "base" type of the VL type.
* [svn-r1708] Turned off compression feature if zlib.h is off.Albert Cheng1999-10-011-0/+3
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* [svn-r1702] Closed some more memory leaks on failure conditions...Quincey Koziol1999-10-011-0/+6
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* [svn-r1701] Closed a couple more resouce leaks..Quincey Koziol1999-09-302-1/+3
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* [svn-r1697] Changes since 19990915Robb Matzke1999-09-302-2/+45
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5public.h We undefine a bunch of things that could get redefined in the config file because some customers have applications that include headers from multiple packages, all of which might be using autoconf. Include <stdint.h> for the C9x types. ./test/h5test.h More flushing of stdout for when testing is redirected down a pipe. ./tools/h5ls.c Added a `-S' or `--simple' switch which causes the output to be simplified somewhat for easier parsing by other scripts. For instance, characters are escaped using a very simple mechanism instead of C's more complicated backslash notation, data doesn't have `{}' or `[]' characters interspersed for compound and array types, and data is printed with exactly one element per line. This switch is now used by an HDF5-to-HTML CGI script being developed for the DMF people. ./tools/h5tools.c ./tools/h5tools.h The repeat threshold which controls how strings are printed when a character repeats a bunch of times is now settable at runtime instead of compile time. The default is to show all characters, like "abceeeeeeeeeeeeeeeeeeeeeeeeeeeeeefgh" But if you set it to something like 5 then any sequence of 5 or more characters is replaced by something shorter, like: "abc" 'e'x30 "fgh" or Added an `str_locale' property which describes how to escape special characters in strings. The default is C-like escapes but an alternative is ESCAPE_HTML which replaces all non-alphanumeric characters with a 3-character HTML escape of the form `%XX' Fixed a bug where empty strings didn't even have the quote characters printed. Now empty strings show up as `""' instead of absolutely nothing. Added a `per_line' property which controls the maximum number of elements which will appear per line of output. The default is infinity but in practice the right margin causes line breaks. By setting the `per_line' value to one and the right margin to a very large value one can achieve output with exactly one element per line.
* [svn-r1696] Closed file handle leak for some failure cases.Quincey Koziol1999-09-302-4/+5
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* [svn-r1695] Fixed various compiler warnings..Quincey Koziol1999-09-308-17/+20
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* [svn-r1689] Mainly adding support for "native" variable-length strings (C ↵Quincey Koziol1999-09-2918-630/+824
| | | | | | | | only currently), but I fixed lots of misc. compiler warnings in other code and also tracked down the memory overwrite bug that was causing the development branch to core dump on most machines.
* [svn-r1651] Fold in J90 changesQuincey Koziol1999-09-241-4/+4
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* [svn-r1642] Snapshot version 1.3 release 0Quincey Koziol1999-09-211-1/+1
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* [svn-r1629] Fixed error in point selections which was incorrectly computing ↵Quincey Koziol1999-09-061-2/+2
| | | | | | the offsets of array elements for most datatypes.
* [svn-r1627] Cleanup some minor bugs in the MPIO file-driver ported by Robb.Albert Cheng1999-09-035-33/+23
| | | | It is working now. Still need to tie up some loose ends.
* [svn-r1624] forgot to actually chance the open to HDopen last time!Patrick Lu1999-09-011-1/+1
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* [svn-r1623] included the H5private.h file and replace calls to open() with ↵Patrick Lu1999-08-311-5/+1
| | | | HDopen().
* [svn-r1621] Added GASS driver. Coded by Saurabh Bagchi, bagchi@uiuc.edu.Albert Cheng1999-08-318-2/+714
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Minor changes done to test/gass_xxx.c so that they print the test skip message when GASS driver is not available. This change is the implementation of GASS within HDF5-1.3 (HDF5 with Virtual File Layer). The GASS driver gives the facility of accessing HDF files on remote ftp servers. To use the GASS driver, the option --with-gass=<GASS path> shoud be specified with configure. An example of the command line used to test the distribution was: ./configure --disable-shared --without-hdf4 --with-gass=/afs/ncsa/projects/hdf/v5/bagchi/globus/GLB/development/sparc-sun-solaris2.6_nothreads_standard_debug/include,/afs/ncsa/projects/hdf/v5/bagchi/globus/GLB/development/sparc-sun-solaris2.6_nothreads_standard_debug/lib --disable-parallel The user should change the path to point to his local GASS installation. Documentation about the features of GASS and the HDF-GASS design is available separately and till it is put up on the official web site, anyone interested may contact me. Test programs to read, write or append remote files have been provided in the test directory as "gass_read.c", "gass_write.c", "gass_append.c". The test programs have the ftp site to access #define-d at the top of the file which the user can change accordingly. ./src/H5Epublic. Added new error type for file close. ./src/H5F.c Added hooks for the GASS driver. ./src/H5public.h Added header files for GASS & Globus. ./src/Makefile.in Added dependancy on GASS driver in LIB_SRC. ./src/hdf5.h Included header file for GASS driver. ./src/H5FDgass.c [NEW] Routines for the GASS driver. ./src/H5FDgass.h [NEW] Header file for the GASS driver. ./test/Makefile.in Added dependancy on the gass test routines. ./test/gass_read.c File to test remote file reading using GASS. ./test/gass_write.c File to test remote file writing using GASS. ./test/gass_append.c File to test remote file appending using GASS.
* [svn-r1619] ./src/H5O.c [1.2, 1.3]Robb Matzke1999-08-307-1296/+222
| | | | | | | | | | | | | | | | Fixed a read-uninitialized-memory error that resulted in the file containing small amounts (<8 bytes each) of uninitialized data. These padding areas (which are never read by hdf5) are initialized to zero now. ./MANIFEST ./src/H5Z.c ./src/H5Zdeflate.c [NEW] ./src/H5Zprivate.h ./src/H5Zpublic.h ./src/Makefile.in The zlib filter was moved to a separate file but is still automatically defined.
* [svn-r1616] added __DLL__ in front of all the function prototypes so the dll ↵Patrick Lu1999-08-302-32/+32
| | | | can see it:
* [svn-r1615] put the __DLL__ in front of the function prototypes so the dll ↵Patrick Lu1999-08-305-28/+28
| | | | could see them
* [svn-r1614] put a #ifdef HAVE_UNISTD_H around the #include for the it.Patrick Lu1999-08-301-4/+32
| | | | | | since on NT I took out the device and inode members in the H5FD_sec2_t and replaced them with 2 fields more appropriate for NT I had to replace all occurences of the device and inode with the correct member
* [svn-r1612] Fixed bug in attribute writing which was causing core dump if an ↵Quincey Koziol1999-08-271-3/+0
| | | | | | | attribute was read back in immediately after being written out (without closing the attribute in between).
* [svn-r1608] ./src/libhdf5.settings.in [1.2, 1.3]Robb Matzke1999-08-272-4/+4
| | | | | | | | | Added C proprocessor flags and non-library linker flags to the description. ./src/H5T.c [1.2, 1.3] Changed return type in tracing macros to H5Tenum_nameof() and H5Tenum_valueof().
* [svn-r1602] Changes since 19990825Robb Matzke1999-08-261-2/+9
| | | | | | | | | | | | | | ---------------------- ./src/H5O.c [1.2, 1.3] Initialzed the padding area between the end of a message and the end of the space allocated for that message. This hopefully fixes an UMR error found by Quincey and prevents the file from containing unwanted data. ./tools/h5ls.c [1.2, 1.3] Fixed a bug where the `Data:' tag didn't get printed for attributes that have more than five values.
* [svn-r1599] Changed return type of H5Tenum_nameof and H5Tenum_valueof from ↵Quincey Koziol1999-08-252-5/+11
| | | | hid_t to herr_t
* [svn-r1595] Patrick Lu1999-08-251-2/+2
| | | | | | | | not sure if this is what was wanted but in the code where the file drivers are registered the end_registration: label was giving me some trouble with compilation on NT. I think the end_registration label was supposed to be empty and but on NT it didn't like that so i had to put a semi colon after the label. if this is wrong let me know and i'll fix it someother way
* [svn-r1594] Patrick Lu1999-08-251-0/+3
| | | | | | | added a conditional for __INT64 in the part of the code where the file addresses are given types. so now if the sizeof__int64 is >=8 then haddr_t is typedefed to an unsigned __int64 and the HADDR_UNDEF = ((haddr_t)(__int64)(-1)). I used the unsigned long long as my example.
* [svn-r1592] ./src/H5private.hRobb Matzke1999-08-252-10/+548
| | | | | Re-committed recent changes that got clobbered in the pablo update. Albert, the source tree should be compilable again now...
* [svn-r1586] There is a problem compiling when the H5TRACE_DECL is void and ↵Dan Wells1999-08-241-7/+12
| | | | | | | | | the -DHAVE_PABLO flag is used on some machines if the H5TRACE_DECL; precedes PABLO_SAVE(xxx);. There will be a empty statment followed by a variable declaration. The same is true if they are the other way around. I added the semicolon to the PABLO_SAVE macro definition and put H5TRACE_DECL; after PABLO_SAVE(xxx)
* [svn-r1585] Changes since 19990820Robb Matzke1999-08-2414-222/+605
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c Added additional elements to a variable initializer in H5Dvlen_get_buf_size() to shut up a warning message. Also added the API tracing call. ./src/H5F.c Added file opening optimizations. If the driver doesn't support the ability to determine when two file handles refer to the same file (like MPIO and GASS) then H5F_open() makes fewer calls to the driver's open callback. Also, if the tentative file access flags are the same as the original flags then H5F_open() makes fewer calls to the file device. ./src/H5FD.c ./src/H5FDprivate.h ./src/H5FDpublic.h Added H5FD_get_class() so the library can get information about what file driver callbacks are defined. This will be useful when more optimization functions are added to the VFL, such as for MPIO derived datatype I/O. ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDmpio.c ./src/H5FDmulti.c ./src/H5FDsec2.c The driver symbols (like H5FD_CORE, etc) are actually function calls. The functions were fixed to return correct values even after calling H5close(). ./src/H5FDmulti.c ./src/H5FDmulti.h Added support for opening a file when parts are missing (only if the caller explicitly allows that in the file access property list). Moved some common code sequences into macros or functions. Added better support for reopening files. All the application has to know is that the file is a multi file and the base name from which all the member names are created. More debugging output when the file is opened with the H5F_ACC_DEBUG flag. Fixed various bugs. ./src/H5Fistore.c Chunked raw data was accidently allocated as meta data instead of raw data. ./src/H5I.c The H5Iget_type() function fails when invoked with an old object ID (an ID which has been closed down). ./test/h5test.c Added an extra argument when setting the multi file access property lists so the test fails if it can't open one of the sub-files. ./tools/h5ls.c Improved the algorithm for deciding what file driver to use. It basically tries all of the predefined drivers and is now able to open family, split, and multi files without looking for special characters in the file name. Added `-e' and `--errors' switches which cause errors from libhdf5 to be reported on stderr in addition to the simple error message displayed by h5ls.
* [svn-r1583] ./src/H5private.h [1.2, 1.3]Robb Matzke1999-08-201-1/+4
| | | | | The prototype for strdup() is protected in case strdup is also a macro. This should fix a bug on Linux RedHat 6.0 (untested).
* [svn-r1576] Added H5Dvlen_get_buf_size function.Quincey Koziol1999-08-198-50/+268
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* [svn-r1574] Changes since 19990817Robb Matzke1999-08-188-82/+69
| | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c ./src/H5F.c ./src/H5FDmpio.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5Smpio.c The `driver_id' for a file was accidently put in two structs. I removed it from the H5F_file_t struct since it's really an attribute of the VFL stuff. More careful incrementing/decrementing the driver ID to fix a memory leak. ./src/H5P.c Rewrote H5Pcreate() in terms of H5P_copy() of a default property list. This fixes some referencing counting bugs.
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