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* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-07290-581/+870
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13252] Moved definition of uint32_t from H5private.h to H5public.h, ↵James Laird2007-02-072-16/+21
| | | | | | | | | | since it's now used in H5Opublic.h. This should fix build errors on Windows. Tested on kagiso; will test on Windows immediately after checkin.
* [svn-r13250] Description:Quincey Koziol2007-02-0714-47/+364
| | | | | | | | | | Add support for inserting attributes into creation order index. Also, update support for dense link & attribute storage in h5debug. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13248] Description:Quincey Koziol2007-02-0616-42/+324
| | | | | | | | | More progress on creation order for attribbutes - they are now basically working for "compact" attribute storage. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13246] Forgot to add a file on previous checkin.James Laird2007-02-061-0/+254
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* [svn-r13245] Added "superblock extension" object header to hold shared ↵James Laird2007-02-0612-19/+127
| | | | | | | | | object header information, rather than storing it directly in the superblock. This should make future updates to the superblock much less painful. Tested on Windows, kagiso, and smirom.
* [svn-r13243] Description:Quincey Koziol2007-02-069-21/+133
| | | | | | | | | Add API routines for tracking & indexing the creation order on attributes. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13240] Description:Quincey Koziol2007-02-0535-338/+301
| | | | | | | | | | More cleanups on the object header message handling code, to make it easier to work with and move forward on the creation order coding. Various other minor cleanups & warning fixes. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13232] Description:Quincey Koziol2007-02-0431-2087/+621
| | | | | | | | | Remove the "scaffolding" for shared message method invocation and simplify the way shared messages are dealt with in general. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13226] Description:Quincey Koziol2007-01-319-379/+224
| | | | | | | | | | Add attributes to the message classes that use the shared message method calling interface, completing the transition. The other mechanism will be removed shortly. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13224] Fixed a bug where messages would report their "raw size" as the ↵James Laird2007-01-302-16/+32
| | | | | | | | | | | | | | size of a shared message rather than the full size of the unshared message, which confused some shared message code. Added a test that should make sure that some messages are too small to be written to the deletion test in tsohm.c. Also added a small optimization so that hash values don't need to be calculated on deletes in list indexes. Tested on Windows, smirom, and kagiso.
* [svn-r13223] Description:Quincey Koziol2007-01-3022-384/+339
| | | | | | | | | | | | Move datatype messages into new shared message method interface Clean up various formatting & compiler warnings Minor optimizations Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13219] Description:Quincey Koziol2007-01-295-75/+45
| | | | | | | | | | | Move dataspace messages into new shared header message method calling scheme. Minor other cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13218] Description:Quincey Koziol2007-01-292-8/+6
| | | | | | | | | Add "old" fill value messages to "new" fill value message sharing (and keep them both in the same shared message index). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13217] Description:Quincey Koziol2007-01-2911-52/+121
| | | | | | | | | | | Move fill value messages into new shared message method calling scheme. Only update an opened dataset's fill value property if it's different from the default fill value settings. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13216] Snapshot version 1.8 release 0 (alpha6snap0)HDF Tester2007-01-291-2/+2
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* [svn-r13208] Changed the minor release string to alpha6snap0 for pre-alpha6 ↵Albert Cheng2007-01-271-2/+2
| | | | snapshot releases.
* [svn-r13206] Fixed a couple of typos in debug output that were causing warnings.James Laird2007-01-261-2/+2
| | | | Not tested; trivial change only in debugging code.
* [svn-r13197] Fix another bug in H5Ocopy where messages that were deleted and ↵James Laird2007-01-251-0/+1
| | | | | | | | | converted to NULL messages weren't marked as dirty so the destination OH wasn't updated to reflect the change. Tested on Windows, smirom, and kagiso.
* [svn-r13195] Snapshot version 1.8 release 0 (alpha5snap0)HDF Tester2007-01-251-2/+2
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* [svn-r13187] Fixed another issue with H5Ocopy when attributes had shared ↵James Laird2007-01-243-18/+34
| | | | | | | | | datatypes/ dataspaces that became un-shared in the destination. Tested on Windows, smirom, and kagiso. Need to extend objcopy test so that it checks that attributes are actually copied successfully.
* [svn-r13186] Cleaned up a few warnings by initializing variables and doing a ↵James Laird2007-01-243-5/+5
| | | | | | few casts. Tested on kagiso, smirom, copper.
* [svn-r13184] Changed release version to alpha5snap0 to restart snapshot release.Albert Cheng2007-01-231-2/+2
| | | | | Platforms tested: Eyeballed the svn diff output. Looked good.
* [svn-r13183] Description:Quincey Koziol2007-01-233-23/+24
| | | | | | | | | Checkpoint work toward getting the fill value message into the shared message interface regime. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13182] Description:Quincey Koziol2007-01-237-125/+122
| | | | | | | | | Move filter pipeline message class to new "shared message interface" regime, along with minor fixups to implementation of calling that interface. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-232-3/+3
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13178] Description:Quincey Koziol2007-01-235-55/+82
| | | | | | | | | | Figured out a way to phase in individual message class support for the new shared message "interface", so check that in before working on the message classes themselves. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13177] Description:Quincey Koziol2007-01-237-131/+131
| | | | | | | | Final tweaks before the big twist to fix shared message method calling. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13176] Description:Quincey Koziol2007-01-2323-172/+171
| | | | | | | | Push code further toward shared message method calling refactor. Tested on: FreeBSD/32 6.2 (duty) Too minor to require h5committest
* [svn-r13175] Description:Quincey Koziol2007-01-223-9/+38
| | | | | | | | Checkpoint more progress on refactoring the shared message code. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13174] Description:Quincey Koziol2007-01-221-0/+2
| | | | | | | | | Comment out adding "old" fill values to "new" fill values until we can figure out why the tests fail on 64-bit machines. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13173] Description:Quincey Koziol2007-01-224-47/+370
| | | | | | | | | Checkpoint more progress toward implementing shared message "interface" methods for message classes that can have messages shared. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13172] Description:Quincey Koziol2007-01-221-8/+3
| | | | | | | | | | | Add "old" fill value messages to "new" style fill value messages when "FILL" flag is enabled for shared messages. Minor code cleanups Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13171] Description:Quincey Koziol2007-01-222-2/+2
| | | | | | | | Add "const" to a parameter that can allow it. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13170] Corrected Windows-style newlines. I'd been a bit sloppy on ↵James Laird2007-01-221-31/+31
| | | | | | earlier checkins, although this doesn't confuse SVN as much as it confused CVS.
* [svn-r13167] Description:Quincey Koziol2007-01-2214-1619/+1282
| | | | | | | | | | | Get rid of two different types of fill value struct (merge H5O_fill_t and H5O_fill_new_t) and clean up & simplify dataset initialization code. (In preparation for shared object header message method call refactoring). Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13166] Fixed bug in H5Ocopy where shared attributes that were deleted ↵James Laird2007-01-222-2/+4
| | | | | | | | | | | during H5Ocopy would become shared NULL messages (oops!). Added a test for this case. Also fixed the #define that caused errors on Windows (and probably other platforms). This may fix the Daily Test error. Tested on Windows, smirom, kagiso, and juniper.
* [svn-r13159] Added h5debug support for shared message structures.James Laird2007-01-197-7/+179
| | | | | Tests run on juniper, kagiso, smirom. h5debug run manually on sample files on Windows, juniper, and kagiso.
* [svn-r13158] Description:Quincey Koziol2007-01-191-0/+18
| | | | | | | | | Checkpoint work on the shared header message refactor while I fix fill value handling. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13157] Description:Quincey Koziol2007-01-191-2/+2
| | | | | | | | Revert change to H5O_fill_new_t, at least until I straight it out more... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13156] Description:Quincey Koziol2007-01-197-20/+382
| | | | | | | | | Begin refactoring code to straighten out the contorted code that handles shared messages. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13155] Description:Quincey Koziol2007-01-1935-381/+507
| | | | | | | | | | | | | | Add "set_crt_index" and "get_crt_index" methods for the object header message class. Unify fractal heap definitions for shared messages and attributes, under "object header" fractal heap definitions. Initial code for adding creation order index to object header messages. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13153] Added checksum to superblock and driver info block (in latest ↵James Laird2007-01-184-108/+185
| | | | | | | | | | | version of superblock). Tried to standardize sizes and added #defines to H5Fpkg.h so that hopefully the code is a little easier to read. Of course this is a file format change. Tested on Windows, juniper, smirom, kagiso.
* [svn-r13152] Description:Quincey Koziol2007-01-186-19/+30
| | | | | | | | | | | Add anotherdense/shared attribute test. Clean up minor attribute/object header codelets, in preparation for adding creation index to attributes. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13147] Changed error return value of H5Sselect_valid() from 0 to FAIL.Christian Chilan2007-01-171-2/+4
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* [svn-r13146] Verifies that current dataspace dimensions are not equal to ↵Christian Chilan2007-01-171-1/+10
| | | | | | H5S_UNLIMITED. Checks performed in H5Screate_simple() and H5Sset_extent_simple().
* [svn-r13143] Refactoring.James Laird2007-01-1624-96/+226
| | | | | | | | | | | | | | Added can_share callback for OH messages. This determines whether the message is allowed to be shared in the heap (committed and immutable datatypes can't be). Fixed a bug in the dense attribute storage that tried to open the shared message heap when it hadn't been created yet. Made the test to extend shared dataspace messages a bit more robust. Refactored the code the searches a shared message list index to be a little more efficient. A few other minor changes. Tested on smirom, kagiso, Windows, and juniper.
* [svn-r13139] Fixed the MULTI problem (Bug #731) that corrupted the data. ↵Raymond Lu2007-01-1216-118/+282
| | | | | | | The problem came from the EOA for the whole MULTI file. It's taken out because it's meaningless for MULTI file. Instead, each individual file has its EOA.
* [svn-r13138] Description:Quincey Koziol2007-01-121-9/+9
| | | | | | | | | | | | | Auto-detect the support for the posix_memalign routine and disable the direct I/O VFD if posix_memalign is not supported. This should allow direct I/O to be auto-detected and disabled on FreeBSD. (Direct I/O itself works fine, but doesn't have the alignment requirements on FreeBSD that it has on Linux, so the code would have to be re-worked to not use posix_memalign and we don't need to support that right now). Tested on: FreeBSD/32 6.1 (duty) Linux/32 2.4 (kagiso)
* [svn-r13135] Continuing code cleanup.James Laird2007-01-1111-145/+125
| | | | | | | | | Moved SOHM table version out of table encoding and completely into superblock. This is a file format change. Added test that extends shared dataspaces. Dynamically allocate arrays in shared message cache code. Clean up comments. Tested on windows, kagiso, smirom.
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