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* [svn-r16058] Maintenance: Changed version to 1.8.2 and released source tar ↵hdf5-1_8_2Elena Pourmal2008-11-101-2/+2
| | | | | | ball. I will tag the release after we build binaries tonight.
* [svn-r16023] Maintenance: Changed version to hdf5-1.8.2-pre1 before creating ↵Elena Pourmal2008-11-032-4/+4
| | | | | | a tar ball for remote testing.
* [svn-r16021] Purpose: Fix behaviour of H5OvisitNeil Fortner2008-11-031-0/+4
| | | | | | | Description: H5Ovisit and H5Ovisit by name will now check for a positive return value from the first callback. Test added for this case. Tested: kagiso
* [svn-r16019] Purpose: Fix Windows definition of H5ftruncate for VS.NETScott Wegner2008-11-031-3/+1
| | | | | | | | Description: On Windows/Visual Studio, there is no function ftruncate. As a result, we have redefined the H5ftruncate macro to use _chsize_s. However, this function also doesn't exist on Visual Studio prior to 2005. Previously we had an #ifdef to support VS 6.0 with the lesser chsize function. This checkin changes the #ifdef to also include VS.NET, since we still support it for HDF5 1.8 branch. Tested: VS.NET on WinXP
* [svn-r16005] Modify the commit of r15936 for H5_USE_16_API. Let H5version.h ↵Raymond Lu2008-10-302-3/+7
| | | | | | check if H5_USE_16_API_DEFAULT is defined by the configure. Then define H5_USE_16_API and use it throughout. Tested on kagiso - supposed to be simple.
* [svn-r15996] Added a definition of HDftruncate for windows to compile with ↵Pedro Vicente Nunes2008-10-301-0/+6
| | | | | | VC6 and later versions Tested: windows
* [svn-r15982] Description:Quincey Koziol2008-10-281-2/+2
| | | | | | | Remove redundant check for 1.6 default API. Tested on: Eyeballed - very trivial
* [svn-r15974] Bug fix:Elena Pourmal2008-10-281-1/+1
| | | | | | | | | | | Compilation on all daily test platforms fails due to missing "("; fixed. Platforms tested: co-login kagiso with --with-default-api-version=v16 and --with-default-api-version=v16 --disable-deprecated-symbols compilation flags.
* [svn-r15958] Snapshot version 1.8 release 1 (snap7)HDF Tester2008-10-262-5/+5
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* [svn-r15951] Fix Bug 1300.Albert Cheng2008-10-261-26/+21
| | | | | | | Removed duplicated information due to previous incompleted changes. Also rearranged the entries to a more logical combinations. Tested: h5committest.
* [svn-r15940] Purpose: Close bug 1305.Neil Fortner2008-10-241-4/+182
| | | | | | | | | Description: Added a new function, H5O_alloc_shrink_chunk, which removes all null messages from a chunk and shrinks the chunk appropriately. Modified H5O_merge_null to call this function when a null message is created with a size >= 64k. Tests added for this functionality. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15939] Description:Quincey Koziol2008-10-231-45/+46
| | | | | | | | | | | | | | | | | | | | | | | | Bring r15937 back from trunk to 1.8 branch: Correct error in metadata accumulator code which wasn't expanding the metadata accumulator when adjoining (but not overlapping) I/O writes occurred. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15936] Changed the library's macros H5_USE_16_API to ↵Raymond Lu2008-10-233-8/+8
| | | | | | | | H5_USE_16_API_DEFAULT avoid possible conflict with user's definition of H5_USE_16_API. The H5_USE_16_API_DEFAULT is defined through configure with the flag --with-default-api-version=v16. Tested with h5committest.
* [svn-r15898] Purpose: Bug FixMike McGreevy2008-10-171-6/+1
| | | | | | | | | | | | | | | Description: Libtool wasn't working on linew because the script was not working with the Solaris Bourne shell. Libtool has built- in detection to ensure that it uses an appropriate shell, but our config/commence.am was hard coding this shell to be /bin/sh. Removing this line allows the shell to be picked up by configure, thus allowing libtool to use the correct shell on linew (bash). This was initially added to correct for a problem on an old machine (janus), so shoudn't be needed for machines we currently support. Tested: full make check install on kagiso and linew, compile only on smirom, duty, and liberty.
* [svn-r15881] Purpose: Bug Fixes, Libtool UpgradeMike McGreevy2008-10-151-0/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: 1) configure now sets LD_LIBRARY_PATH before checking for presence of SZIP encoder, so user does not need to set this. The path is then saved and sent to Makefiles, and used when "make check-install" is invoked, so user doesn't need to set this manually. 2) Upgraded libtool to version 2.2.6a 3) Rearranged tools build order as h5dump depends on existence of h5diff and h5import. Since h5dump is a sister directory as opposed to a parent of either, it doesn't know about the build rules of these tools, so setting any sort of explicit dependency confuses automake as it won't know how to build the tools. Instead, setting CONFIG = ordered forces an in-order traversal of each tools subdirectory. (without it will also traverse in order by default, but this should prevent gmake's -j option from jumping ahead as well). 'make check install' should now be able to be invoked after 'configure' without causing a dependency failure. 4) Removed H5_HAVE_LARGE_HSIZET macro from vms/src/h5pubconf.h, as this macro has now been out of the code for some time. (vms pubconf needs to be updated manually, which is why it was still hanging around). Tested: kagiso, smirom, liberty Note: h5diff looks to be causing failures in h5copy and h5dump tools tests, though these were present before any of my changes. My changes only affect build order and configuration setup, and shouldn't prevent fixes for these failures coming in after this checkin. Other than these, tests pass fine.
* [svn-r15869] Description:Quincey Koziol2008-10-152-2/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r15868 from trunk to 1.8 release branch: Correct a minor error in file free space allocation which was affecting the 'multi' VFD and preventing some tests from fully working with it. Wholesale revisitation of all the places where tests were disabled with various VFDs and remove or correct all these so that _only_ the tests which _really_ can't work with particular VFDs are skipped during a 'make check-vfd' test. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15863] Description:Quincey Koziol2008-10-1417-176/+296
| | | | | | | | | | | | | | | | | | | | | Bring r15861 back from trunk to 1.8 release branch. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15845] Purpose: Add Windows-specific version of HDftruncateScott Wegner2008-10-131-0/+1
| | | | | | | | Description: Windows doesn't include a version of the system call ftruncate. There is a similar call, _chsize_s, which performs very similarly. Thus, we map HDftruncate to _chsize_s in our Windows header file, H5win32defs.h. Tested: VS2005 on WinXP
* [svn-r15836] Fixed a hole in the input checking for the metada cache.John Mainzer2008-10-111-0/+1
| | | | | | | | | Tested on Phoenix (serial) Kagiso (parallel) Linew (serial) There were updates during my testing, but I decided to check in regarless without further testing as my change is very localized.
* [svn-r15829] Description:Quincey Koziol2008-10-092-6/+4
| | | | | | | | | | | | | | | | Bring bck revision 15828 from trunk: Skip some free space manager tests when using a VFD that doesn't support the feature being tested. Use a particular memory type with the file free space sections. Uncomment the metadata aggregator feature for the fmily VFD, as it appears to be working after the file free space changes. Tested on: FreeBSD/32 6.3 (duty) h5committest not needed, change already tested on trunk...
* [svn-r15826] Description:Quincey Koziol2008-10-094-47/+139
| | | | | | | | | | | | | Bring revision 15825 from trunk: Fix various problems with a the core & sec2 VFDs. Improve the h5_get_file_size() routine to handle files created with VFDs that use multiple files. Tested on: FreeBSD/32 6.3 (duty) Already tested on other machine, in trunk.
* [svn-r15801] Description:Quincey Koziol2008-10-0797-6236/+9383
| | | | | | | | | | | | | | | | | | | | | | | Bring r15800 back from trunk: - File free space branch changes through r15794 Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15797] Purpose: Close bug #1322Neil Fortner2008-10-0711-52/+83
| | | | | | | | | Description: Fixes a possible datatype id leak that could occur during compound datatype conversion, or more precisely, when unregistering those conversions. Datatype ids normally registered by the library are no longer visible to the application via H5Fget_obj_ids and H5Fget_obj_count. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15781] Snapshot version 1.8 release 1 (snap6)HDF Tester2008-10-062-3/+3
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* [svn-r15766] Modifications for bug #1247 so that the user can specify the driverVailin Choi2008-10-035-23/+257
| | | | | | | | | | | | to use when opening the external linked target file. 1. Two new public routines are added to H5Plapl.c as well as "del/copy/close" callbacks for the property itself. 2. Modify H5L_extern_traverse() to use the fapl set via H5Pset_elink_fapl() and retrieve via H5Pget_elink_fapl(). 3. Add 3 tests to links.c to verify H5Pset/get_elink_fapl(). Also fix the compiler warning for the "if condition" in H5_build_extpath() of H5system.c.
* [svn-r15754] Bug #1312Pedro Vicente Nunes2008-10-021-14/+20
| | | | | | | Solution: Check for the existence of chunks before pruning them (an assertion was triggered when attempting to do so) Tested: windows , linux, solaris
* [svn-r15728] Scot Breitenfeld2008-09-301-1/+1
| | | | Cosmetic: Fixed spacing issue in Fortran summary output statement.
* [svn-r15715] Snapshot version 1.8 release 1 (snap5)HDF Tester2008-09-282-4/+4
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* [svn-r15707] I changed the return values of H5Fget_obj_ids and ↵Raymond Lu2008-09-263-39/+69
| | | | | | | | H5Fget_obj_count to ssize_t and modified C++ and Fortran API functions. This is for bug #1245. Tested on kagiso - I've tested the same change using h5committest.
* [svn-r15702] Description:Quincey Koziol2008-09-251-12/+4
| | | | | | | | | Bring back r15701 from trunk: Remove some unused variables Tested on: Mac OS X/32 10.5.5 (amazon) Too minor to require h5committest
* [svn-r15683] Purpose: fix bug 1298Neil Fortner2008-09-227-42/+61
| | | | | | | | | | | Description: The optimized "subset" compound conversion function would improperly copy the "blank" space at the end of compound types. Modified H5T_conv_struct_init to detect when the subset type has extra space at the end, and calculate the size of the data that should be copied into the conversion buffer for each element. Changes to the functions that implement these conversions. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15677] Description:Quincey Koziol2008-09-2226-135/+129
| | | | | | | | | | | | Bring r15676 back from trunk: Centralize all macros for declaring "magic numbers"/signatures for objects in the file into src/H5Fprivate.h, so it's easier to know what values have already been defined, etc. Tested on: Mac OS X/32 10.5.5 (amazon) Too minor to require h5committest
* [svn-r15657] Purpose: fix bug 1286Neil Fortner2008-09-182-49/+157
| | | | | | Description: Added configure test to see if pointer alignment restrictions are enforced (as in dereferencing an unaligned pointer causes an error). Added code in H5Tvlen.c to avoid dereferencing unaligned pointers, conditionally compiled based on the configure test. Added test case in dtypes.c which would previously cause such machines to fail. Tested: kagiso, smirom, linew (h5committest); linew64
* [svn-r15638] Bug 710: partial fix.Albert Cheng2008-09-161-144/+144
| | | | | | | | | | | Temporary removed b2 from the --enable-debug=all list so that this option will pass. "configure --help" lists the --enable-debug=all and users tend to use it and end up with compile failures in the b2 debug code. Since this bug will not be fixed soon, this is a temporary fix to let the configure and build work. Tested: h5committest plus "--enable-debu=all" test in kagiso.
* [svn-r15629] Description:Quincey Koziol2008-09-1694-872/+872
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15624] This check-in fixes a bug inside parallel HDF5 testsuite.MuQun Yang2008-09-152-2/+32
| | | | | | When enable-debug is turned on, a special macro block H5_HAVE_INSTRUMENTED_LIBRARY inside HDF5 will be executed to check if some collective chunk IO test cases are being run with the correct settings(one link, multiple chunk etc.). However,when complicated derived datatype in some mpi-io packages are not supported, the library has to switch one link IO with/without the optimization to multiple chunk IO with/without the optimization. The current testsuite doesn't know this and generates a false assertion failure message. This check-in fix this problem by providing a second property to avoid the false faiure message.
* [svn-r15621] Snapshot version 1.8 release 1 (snap4)HDF Tester2008-09-141-2/+2
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* [svn-r15613] Description:Quincey Koziol2008-09-114-12/+11
| | | | | | | | | Bring back r15612 from trunk: Minor cleanups of formatting, etc. Tested on: Mac OS X/32 10.5.4. (amazon) Too minor to require h5committest
* [svn-r15610] Description:Quincey Koziol2008-09-1056-2304/+2559
| | | | | | | | | Bring r15609 back from trunk: Omnibus compiler warning cleanup & some formatting happiness. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15597] Snapshot version 1.8 release 1 (snap3)HDF Tester2008-09-081-2/+2
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* [svn-r15567] Snapshot version 1.8 release 1 (snap2)HDF Tester2008-09-014-2/+10
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* [svn-r15553] Fix potential memory leak in H5E_close_msg_cb.Neil Fortner2008-08-281-1/+4
| | | | Tested: kagiso
* [svn-r15516] Fix faulty error checking in call to H5I_remove().Neil Fortner2008-08-211-1/+1
| | | | | | Add prototype to the top of app_ref.c to suppress warning. Tested: kagiso
* [svn-r15513] Description:Quincey Koziol2008-08-2198-1535/+1544
| | | | | | | | | | Bring back r15510 & r15512 from trunk: Fix compiler warnings and formatting. Tested on: Mac OS X/32 10.5.4 (amazon) More tests upcoming
* [svn-r15489] Description:Quincey Koziol2008-08-191-1/+1
| | | | | | | | | | | Bring rev. 15488 back from trunk: Fix bug where library could core dump when an invalid location ID was passed to H5Giterate() (and add test for this case). Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15486] Purpose: Allow library to shut down properly when objects have ↵Neil Fortner2008-08-1961-518/+558
| | | | | | | | | | | | | | | | reference count > 1. Description: Added a new field 'app_count' to H5I_id_info_t struct, to track the reference count on an id due to the application. the old 'count' field tracks the total. Generally any id visible to the application gets placed in app_count. Added app_ref boolean parameter to H5I_inc_ref, H5I_dec_ref, H5I_register, H5I_clear_type, and a few other functions, to specify whether the operation(s) being performed on the id(s) are due to the application (TRUE) or not (FALSE). Test added for this case. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15480] Snapshot version 1.8 release 1 (snap1)HDF Tester2008-08-171-2/+2
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* [svn-r15478] Removed vestigal code from H5SM_delete_from_index() which would ↵Neil Fortner2008-08-171-11/+0
| | | | | | | | | have dereferenced an uninitialized pointer if it had been reachable. Closes bz #1280. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15471] Snapshot version 1.8 release 1 (snap0)HDF Tester2008-08-141-2/+2
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* [svn-r15463] Description:Quincey Koziol2008-08-122-2/+4
| | | | | | | | Bring revision 15462 (compiler warnings) back from trunk. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require h5committest)
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