| Commit message (Collapse) | Author | Age | Files | Lines |
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Updated RELEASE.txt file accordingly.
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configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only).
Tested: amani, jam, linew (h5committest) and with configure on these machines and tejeda.
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Correct function enter macro and add 'done' label, for routine that is
only invoked when configured with --enable-debug=all.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug & production
(too minor to require h5committest)
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Correct error where variable didn't always get initialized correctly.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug & prod
Windows w/debug & prod
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Correct error where variable didn't always get initialized correctly.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug & prod
Windows w/debug & prod
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Fix memory leaks
Description
Added a routine to free memory which addresses a memory leak
when variable length strings are used as fill values.
Also added some minor tweaks to the H5I 'save ID structures' mechanic.
Tested:
h5committest and valgrind (on jam/amani) to confirm freed memory.
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Added note about use of volatile for variables.
Added blurb to release notes about fixing strict-aliasing problems.
Tested on:
None - trivial change to comment.
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Correct error in H5C_resize_entry() where protected entry sizes were
not updated if the entry being resized was both pinned and protected.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committested on trunk)
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DESTDIR=<install directory> install, installcheck and uninstall is supported for installing examples, since they are now installed as part of make install. This was necessary for rpmbuilds, but should also be supported otherwise.
Tested: amani, jam, linew with committest, rpmbuild on jam and amani.
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Tested: Local linux
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Bring r18740 from trunk to 1.8 branch:
Bring r18738 from metadata journaling 'merging' branch to trunk:
Switch H5AC_resize_pinned_entry() to work on protected entries as well,
and rename to H5AC_resize_entry()
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
(h5committested on trunk)
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Bring r18725 from trunk to 1.8 branch:
Bring r18724 from metadata journaling 'merging' branch to trunk:
Rename H5[A]C_rename to H5[A]C_move_entry.
Tested on:
FreeBSD/32 6.3 (duty) w/debug
(h5committested on trunk)
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Bring r18721 from trunk to 1.8 branch:
Bring r18720 from metadata journaling merging branch to trunk:
Bring changes from metadata journaling branch to 'merging' branch:
Rename H5[A]C_mark_pinned_or_protected_entry_dirty() to
H5[A]C_mark_entry_dirty() and get rid of H5[A]C_mark_pinned_entry_dirty().
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committested on trunk)
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Bring r18716 from trunk to 1.8 branch:
Bring r18715 from metadata journaling merging branch to trunk:
Changes to further align trunk with state of metadata journaling branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Improve configure's large-file support control.
Description:
Modified configure to now attempt to add defines necessary for
supporting largefiles on all systems, instead of solely on linux. This
is in response to user requests to enable largefile support on Solaris
by default, as well as to give extra control on AIX (instead of just
jamming the necessary flag into the config files).
The old --enable-linux-lfs flag is being deprecated in favor of the
--enable-largefile flag (enabled by default), which can be used on all
platforms. --disable-linux-lfs can still be used to disable largefile
support (on linux) when the --enable-largefile flag is not specified.
On systems where large files cannot be supported in this manner,
configure will report as such.
Tested:
h5committest
AIX (NCSA's blue_print machine)
duty, liberty, and linew.
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H5_CYGWIN_ULLONG_TO_LDOUBLE_ROUND_PROBLEM to make it more descriptive.
I tested on jam and Cygwin.
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Bring r18702 from trunk to 1.8 branch:
Bring r18672 from metadata journaling "merging" branch to trunk:
Mostly changes to move to only using one 'user data' parameter for
calls to H5AC_protect(), along with some minor reformatting code cleanups.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Added the configure option --enable-h5dump-packed-bits for the h5dump
optional feature.
Tested:
Jam (default and --disable-h5dump-packed-bits).
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configure.in. This macro is used to skip
the data conversion test from unsigned long long to long double. The GCC on Cygwin seems to
have rounding problem when doing conversion from unsigned long long to long double (Please bug
#1813).
Tested on jam. I'll test it on Cygwin after this checkin.
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the xyz function
names.
Tested: Jam only since this is trivial.
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Tweak H5detect to be even more careful about its actions, to allow
gcc 4.5 to use '-O3'. Also, minor code cleanups in H5Tfloat.c
Tested on:
FreeBSD/64 6.3 (liberty) w/gcc 4.5 & production mode
(h5committest not necessary/appropriate)
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Description:
longjmp do not necessary restore signal that is blocked during the signal
handling. This caused the Alignment test to fail quietly, resulting in wrong
alignment information which will cause failures later.
Solution:
One can use sigsetjmp/siglongjmp to restore signal handling but not all systems
such as Cray XT or VMS supports sigsetjmp. Backup solution is to use
sigprocmask to reset the signal. Again, some systems may not support it either.
Added code to try the first and then the second solution. Also added tests
to verify if the signal_handler routines are working properly. Finally, added
code to print results of the verification (in form of comments) to H5Tinit.c
for inspection in case of failure.
(Note that many platforms do not have alignment limits at all and ALIGNMNET
code never raise the SIGBUS or SIGSEGV errors. In those cases, it does not
matter whether the signal handlers work or not. Again, this can be deduced
from the results comments near the end of the H5Tinit.c. If the sum of signal
handlers called equals the total of verify, it means ALIGNMENT does not raise
any signals.)
Tested: htcommittested (linew is not accessible), jam(serial), Redstorm.
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Added check in H5Rcreate for space_id = -1 and is region reference type.
Added test of H5R package API parameters to testhdf5 test, these test only the public API parameter checks.
Tested: local linux
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Bring r18650 from trunk to 1.8 branch:
Bring back various minor tweaks & cleanups from the revise_chunks
branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
(h5committested on trunk)
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the offset, alignment, and
size of nested compound type are calculated by using H5T_cmp_offset. The old way had a bug
in it (see bug #1850).
Tested on amani, linew, and jam.
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Bring r18634 from trunk to 1.8 branch:
Clean up compiler warnings.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
(h5committested on trunk)
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Bring r18630 from trunk to 1.8 branch:
Fix remaining aliasing problems and enable optimizations w/gcc now. This
addresses the remaining issues for Bug#1398.
Tested on:
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
(h5committested on trunk)
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Bring r18627 from trunk to 1.8 branch:
More progress toward addressing Bz#1398: add 'volatile' keyword to floating-
point types when detecting their properties. Also, minor code formatting
cleanups.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug)
(h5committested on trunk)
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Bring r18625 from trunk to 1.8 branch:
Checkpoint progress on Bz#1398 - strict aliasing issues. (Lots of compiler
warnings & code cleanups also)
Tested on:
Mac OS X/32 10.6.3 (amazon) in debug mode
(h5committested on trunk)
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Bring r18621 from trunk to 1.8 branch:
Clean up compiler warnings.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
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Bring r18618 from trunk to 1.8 branch:
Add new internal object header routines to query the header chunk that
a message is in, and to lock/unlock a message into a chunk (so it doesn't get
moved into another chunk during allocation/free events).
Also, move dataspace message to beginning of object header messages
added to a dataset's object header, so it can be locked into chunk #0 (when
performing SWMR operations).
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
(h5committested on trunk)
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Bring r18616 from trunk to 1.8 branch:
Clean up compiler warnings.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
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Bring r18612 from trunk to 1.8 branch:
Clean up compiler warnings & code formatting
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
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Bring r18610 from trunk to 1.8 branch:
Clean up compiler warnings & code formatting issues.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug)
(too minor to require h5committest)
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Bring r18608 from trunk to 1.8 branch:
Simplify object header allocation routines, and clean up some compiler
warnings.
Tested on:
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
(h5committested on trunk)
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Bring r18600 from trunk to 1.8 branch:
Increment reference count on object header when "fake" object header
chunk proxy is returned from H5O_chunk_protect(). Also, clean up the
interface to H5O_chunk_unprotect by removing the unnecessary 'oh' parameter.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(h5committested on trunk)
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Fix missing NULL initialization of pointers.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(h5committested on trunk)
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Bring r18595 from trunk to 1.8 branch:
Clean up compiler warnings
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
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Autotool Upgrade / Libtool Bug Fix
Description:
Updated autotools referenced in bin/reconfigure as follows:
Autoconf 2.64 --> Autoconf 2.65
Automake 1.11 --> Automake 1.11.1
Libtool 2.2.6a --> Libtool 2.2.6b-mcg
The referenced libtool version is a custom version of 2.2.6b. It
has been tweaked to fix a bug in libtool that occurs
when using PGI 10.0 compilers. A check incorrectly categorizes
the C++ compiler as version 1.0 instead of 10.0, and the link
line is subsequently set up incorrectly and fails to compile.
A patch has been made available and will be included in the next
release of libtool, but in the meantime I've applied the patch to a custom
installation as indicated above. This bin/reconfigure now references
the custom installation, and the resulting configure script will correctly
categorize the PGI 10.0 C++ compiler.
Ran bin/reconfigure to regenerate configure and makefiles.
Tested:
jam and amani with PGI 10.0 compilers.
h5committest
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Bring r18571 from trunk to 1.8 branch:
Bring r18542 from metadata journaling "merging" branch to trunk:
Bring new object header pin/unpin & protect/unprotect routines and
split-out object header chunk proxy changes from metadata_journaling branch to
"merging" branch, along with some other minor tweaks to clean up compiler
warnings, etc.
Also: clean up chunk protect/unprotect calls when allocating or freeing
space in a chunk, optimize metadata accumulator code to avoid some re-reading
of information from the file, refactor H5O_pin/H5O_unpin from way they are done
on the merging branch back to way they were previously done on trunk, other
minor code cleanups, etc.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
(h5committested on trunk)
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This error was
only reproducible through the use of electric fence.
Tested: Fedora (too minor for h5committest)
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Bring r18564 & r18565 from trunk to 1.8 branch: clean up compiler warnings
and whitespace issues.
Tested on:
Mac OS X/32 10.6.3 (amazon)
(too minor to require h5committest)
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Bring r18548 from trunk to 1.8 branch:
Minor cleanups to compile with PGI C compiler 10.x.
Tested on:
Mac OS X/32 10.6.3 (amazon)
(tested on trunk)
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