| Commit message (Collapse) | Author | Age | Files | Lines |
|---|
| ... | |
| | |
|
| | |
|
| |
|
|
| |
Tested: local linux
|
| | |
|
| | |
|
| |
|
|
|
|
|
| |
since we don't plan to support it on OpenVMS. I updated vms/src/h5pubconf.h, too.
Tested on jam but not on OpenVMS yet.
|
| |
|
|
|
|
|
|
|
|
|
|
| |
Bring r23713 and r23717 from trunk to 1.8 branch:
Clean up warnings, switch library code to use Standard C/POSIX wrapper
macros, remove internal calls to API routines, update checkapi and checkposix
scripts.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
Big-Endian Linux/64 (ostrich)
|
| | |
|
| |
|
|
|
|
|
|
|
| |
of code from the trunk. It fixes the problem by first iterating
through all opened datasets and groups to see if any of them uses the filter. If it finds one, the function fails with a message.
Then the function flushes all opened files.
Tested with h5committest.
|
| |
|
|
|
|
|
|
| |
Revert r23696, which breaks big-endian tests on ostrich, etc. Will
investigate and submit correction later.
Tested on:
BE & LE Linux systems (ostrich, koala, jam, emu)
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r23695 from trunk to 1.8 branch:
Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!)
Merge changes from Coverity branch back to trunk:
r20684:
Fix for coverity bug #1721 which was due to the fix for coverity bug #943.
r20685:
Use HDstrncpy. --gh
r20761:
Purpose: Fix valgrind issues
Description:
Free image_data and data as appropriate in test_image.
r20762:
Purpose: Fix coverity issue 600
Description:
Add check for return value of H5O_close in H5Ocopy. Also cleaned up various
warnings.
r20763:
Purpose: Fix valgrind issues with h5stat
Description:
Modified h5stat to free "iter" before exit, and free "hand" before exit if
parse_command_line exits directly.
r20764:
fixed coverity issues:
69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80
r20765:
Fixed coverity bug 668
Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.
No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1.
I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program.
r20766:
Fixed coverity bug 667
Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.
No actual integer overflow tests are performed since it's just a test program.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
(h5committest upcoming)
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Need to update libtool version number for v1.8.11 since two functions,
H5Pget_dxpl_multi and H5Pset_dxpl_multi were removed. Then v1.8 is now
v1.8.12-xxx and needed an update to.
config/lt_vers.am:
libtool information is changed to 8.0.1 because it is a revision
different from v1.8.10.
configure:
src/Makefile.in:
hl/src/Makefile.in:
hl/c++/src/Makefile.in:
hl/fortran/src/Makefile.in:
c++/src/Makefile.in:
fortran/src/Makefile.in:
README.txt:
autogenerated by bin/reconfiure.
Tested: h5committest, then visual inspect that the libhdf5.so.x.y.z is
changed accordingly.
Built in duck by hand and see it changes to libhdf5.8.dylib too.
|
| | |
|
| | |
|
| | |
|
| |
|
|
|
|
|
| |
This removes some dead code that belonged to the multi dxpl functions
that were removed in HDF5 1.8.11.
Tested on: jam w/ C++ (minor change)
|
| |
|
|
|
|
| |
Reset RELEASE.txt for next release (1.8.12).
Tested: h5committest.
|
| | |
|
| |\
| |
| |
| |
| |
| | |
project) and a few changes for CMake and Windows from the trunk (related to DESY).
Tested with desycommittest (emu, koala, jam, ostrich, and ostrich-no-shared-lib), but can't wait for duck to finish. It takes too long.
|
| | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Bring r23529 from trunk to 1.8 branch:
Stop aliasing property to indicate internal collective metadata operations
with property to perform collective raw data operations from the application.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/parallel
(daily tests on trunk)
|
| | |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Bring r23549 from trunk to desy_1_8 branch:
More misc. cleanups, but main change is to make an "extern" header file
for the plugin interface.
Tested on:
Mac OSX/64 10.8.3 (amazon)
|
| | |
| |
| |
| |
| |
| |
| |
| | |
Further revisions to dynamic library loading code, to clean it up.
Tested on:
Mac OSX/64 10.8.3 (amazon)
(h5committest not required on this branch)
|
| | |
| |
| |
| |
| |
| | |
H5PL_get_plugin_info functions.
Tested on koala - simple change.
|
| | |
| |
| |
| |
| |
| | |
H5Pocpl.c.
Tested on koala - no code change.
|
| |/
|
|
|
|
| |
into this 1.8 DESY branch.
Tested with h5committest (duck failed with CMake because I don't know how to change test/CMakeLists.txt. I'll wait for Allen to do it).
|
| | |
|
| |
|
|
|
|
|
|
|
|
|
| |
Removed the H5Pset_dxpl_multi and H5Pget_dxpl_multi functions from
the library. The intended functionality for them was never fully
implemented and they are fundamentally broken.
The functions were removed from the C and C++ interfaces. They were
not exported in the Fortran interface.
Tested on jam
|
| |
|
|
|
|
|
|
|
|
|
| |
Fixes an issue (HDFFV-8159) where uninitialized memory was being read
during variable-length type conversion. All variable-length type conversion
buffers are now initialized to contain 0s on allocation.
Tested on: jam w/ fortran and c++
This is a very small change (basially changing malloc to calloc) and
is unlikely to cause issues on other platforms.
|
| | |
|
| | |
|
| | |
|
| | |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Merge r23313 from trunk to 1.8 branch:
Bring changes from Coverity branch to the trunk:
r20612:
Changed string functions to versions with string length to fix coverity issues
922, 942 and 943.
r20614:
Use HDsnprintf. --gh
r20675:
Fix for coverity #1714 due to the fix for #810.
Use HDfree() instead of H5MM_xfree().
r20678:
Repaired coverity issue #598 -- failure to check return value from a
call to fstat(), or to tidy up in the event of failure.
r20679:
Use HDstrncpy. --gh
r20681:
Use HDstrncat and HDstrncpy. --gh
Tested on:
Mac OSX/64 10.8.2 (amazon) w/debug, C++ & FORTRAN
(too minor to require h5committest)
|
| | |
|
| |
|
|
|
|
|
|
|
|
|
|
|
| |
Purpose: Implement H5Dscatter and H5Dgather
Description:
Adds 2 new API functions, H5Dscatter and H5Dgather. H5Dscatter retrieves data
from a specified callback function and scatters it into a selection, defined by
a supplied dataspace, within a supplied memory buffer. H5Dgather gathers data
from a selection within a supplied memory buffer and passes it in a contiguous
form to a supplied callback function. Added tests for these functions
Tested: jam, ostrich, koala (h5committest); ummon; ummon (1.8)
|
| | |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r23238 from trunk to 1.8 branch:
Bring changes from Coverity branch to trunk:
r20528:
Purpose: Fix coverity issue 1372
Description: Rewrite file open secition of H5FD_stdio_open to avoid TOCTUO
condition. No longer calls access, and uses a tentative open in "rb" or "rb+"
mode to check for existence of the file.
r20609:
Use HDstrncpy and HDstrncat. --gh
r20611:
Use HDstrncpy. --gh
Tested on:
Mac OSX/64 10.8.2 (amazon) w/debug, C++ & FORTRAN
(h5committest not required, already tested on branch)
|
| |
|
|
|
|
|
|
|
|
|
| |
Bring r23223 from trunk to 1.8 branch:
Revert use of snprintf() for sprintf(), as it is not supported on Windows.
(And file a bug, http://jira.hdfgroup.uiuc.edu/browse/HDFFV-8302, for the
general problem)
Tested:
Mac OSX/64 10.8.2 (amazon)
|
| | |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r23219 from trunk to 1.8 branch:
Bring reviewed changes from Coverity branch back to trunk (QK & JK):
r20457:
Coverity issue 691: return of H5duo could be negative. Fixed by using
STDOUT_FILENO and redesign parse_command_line and main to cleanup file
allocations. The output_file var is null when using stdout. In cleanup do not
close output_file if NULL.
r20510:
Initialize ufid = -1 and predicate HDclose call on ufid != -1
r20511:
Purpose: Fix coverity issue 1715
Description: Free "file" and nested data on failure in H5FD_core_open.
r20512:
Initialize ifid = -1 and predicate HDclose call on ifid != -1
r20514:
Initialize h5fid = -1 and predicate HDclose call on h5fid != -1
r20516:
Added else branch to the if (ret_value < 0) check.
r20522:
Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor
potential buffer overwrite bugs, or coverity errors. Fixed by replacing
strcpy and sprintf with strncpy and snprintf.
r20523:
fixed coverity issues 68, 1120, 1116i
r20524:
Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence.
r20601:
Purpose: Fix coverity issues 1703-1705
Description: Modified the cleanup code in test_free in accum.c to reset
allocated buffers to NULL after they are freed, and modified the error cleanup
code to check if these buffers are NULL before freeing them. Also fixed some
unrelated warnings in accum.c.
r20602:
Use HDsnprintf and HDstrncat
r20603:
Purpose: Fix coverity issues 808-809
Description: Modified test_core in vfd.c to check the returns from malloc, and
keep track of whether points and check are allocated by setting them to NULL
when they are not. Added code to free points and check on error if they are
not NULL. Also fixed unrelated warnings in vfd.c.
r20604:
Use HDstrncpy.
r20605:
Use HDstrncpy and HDstrncat.
r20606:
Purpose: Fix coverity issue 807
Description: Modified long_compact in stab.c to keep track of whether objname is
allocated by setting it to NULL when it is not. Added code to free objname on
error if it is not NULL.
r20607:
Changed string function calls to use versions that specify the string length
to fix coverity issues 832 and 839.
Tested on:
Mac OSX/64 10.8.2 (amazon)
(Too minor to require h5committest)
|
| |
|
|
|
|
| |
This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support.
Tested: local linux
|
| |
|
|
|
| |
HDFF-8203 Break H5FDmpi.h header into public and private components
https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8203
|
| |
|
|
|
|
| |
header file H5Iprivate.h is included but not H5Pprivate.h.
Tested on koala, jam, ostrich.
|
| |
|
|
|
|
| |
(r23162).
Tested on koala, jam, ostrich.
|
| | |
|
| |
|
|
|
|
|
|
|
|
|
| |
Merged 23111 from the trunk.
(Core VFD and Mac OS X I/O changes)
Tested on:
64-bit Windows 7, Visual Studio 2010, CMake
64-bit Mac OS X Snow Leopard (Fred), Fortran, C++
64-bit BE Linux (Ostrich), Fortran, C++
32-bit LE LInux (jam), Fortran, C++ (also parallel w/ Fortran)
|
| | |
|
| | |
|
| | |
|
| | |
|
