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* [svn-r22711] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-232-76/+136
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22708] Description:Quincey Koziol2012-08-226-199/+169
| | | | | | | | | | | | Bring r22707 from trunk to 1.8 branch: Bring back some more cleanups from the plist_encode_decode branch, clean up some formatting and compiler errors, and add a few more property comparison routines that we've skipped implementing in the past. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22682] Description:Quincey Koziol2012-08-1510-1071/+590
| | | | | | | | | | Bring r22681 from trunk to 1.8 branch: Clean up file driver property handling, along with some misc. warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe (h5committest upcoming)
* [svn-r22677] Changes needed to make the default free-list mapping from ↵Vailin Choi2012-08-1416-51/+412
| | | | | | H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY. Also changed H5O_copy_search_comm_dt_check() to use H5O_obj_class() to get object type instead of H5O_get_info(...TRUE...) saving time in traversing metadata.
* [svn-r22671] Snapshot version 1.8 release 10 (snap7)HDF Tester2012-08-131-2/+2
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* [svn-r22658] Bug fix: previous commit has a mistake--it used the wrong type ↵Albert Cheng2012-08-091-1/+1
| | | | | | | | of return value of FAIL. The function type is a pointer. Fixed it by changing it to NULL. Tested: In remote machine ADA (aix).
* [svn-r22647] Description:Quincey Koziol2012-08-0916-45/+82
| | | | | | | | | | | Bring r22646 from trunk to 1.8 branch: Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r22630] Snapshot version 1.8 release 10 (snap6)Larry Knox2012-08-061-2/+2
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* [svn-r22628] Description:Quincey Koziol2012-08-0417-95/+179
| | | | | | | | | | | Bring r22627 from trunk to 1.8 branch: Merge some of the changes on the plist_encode_decode branch back to the trunk. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22609] Description:Quincey Koziol2012-07-2646-485/+686
| | | | | | | | | | | | | | | | | Bring r22608 from trunk to 1.8 branch: Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
* [svn-r22607] Port test from r22601 from trunk to 1.8 branch. Also remove ↵Neil Fortner2012-07-261-24/+0
| | | | | | | | spurious FUNC_ENTER_PACKAGE_TAG and FUNC_ENTER_STATIC_TAG macros. Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22585] Issue 8068 - A user reported some random data in the padding of ↵Raymond Lu2012-07-171-2/+2
| | | | | | fill value. The problem happened in H5P_get_fill_value. I believe it's because the background buffer wasn't big enough. So I corrected it in this checkin. Tested on jam - simple change. I'm porting the fix from the trunk.
* [svn-r22583] Description:Quincey Koziol2012-07-1621-460/+728
| | | | | | | | | | | Bring r22582 from trunk to 1.8 branch: Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* [svn-r22524] Snapshot version 1.8 release 10 (snap6)Larry Knox2012-07-091-2/+2
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* [svn-r22493] I took out the "return an error" line in H5Dget_offset, to ↵Raymond Lu2012-06-261-2/+0
| | | | | | | | match what the RM says about the function behavior. Quincey added it some time ago without realizing it caused test errors (Issue 8072). Tested on ostrich, but imported the fix from the trunk - simple change.
* [svn-r22488] Snapshot version 1.8 release 10 (snap4)HDF Tester2012-06-251-2/+2
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* [svn-r22474] Add check for MINGW - ws2_32 libraryAllen Byrne2012-06-191-0/+3
| | | | Tested: windows - mingw
* [svn-r22451] Brought cmake configuration / configure changes from Trunk.Allen Byrne2012-06-114-6/+9
| | | | Tested jam, local linux
* [svn-r22449] Snapshot version 1.8 release 10 (snap3)HDF Tester2012-06-101-2/+2
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* [svn-r22438] (1) fix for making MEM_GHEAP as MEM_DRAWVailin Choi2012-06-066-43/+121
| | | | | | | | | | | | | | | | | | | | | (2) fix to extend into the aggregator based on threshold (3) fix for the "flavor" logging problem (4) fix for test failures due to the above fixes (5) bug fix for h5stat when h5stat against a non-existing file --Ths line, and th se below, will be ignored-- M test/mf.c M src/H5MFaggr.c M src/H5FDpublic.h M src/H5MF.c M src/H5FDmulti.c M src/H5FDlog.c M src/H5Faccum.c M tools/h5copy/testfiles/h5copytst.out.ls M tools/h5copy/testfiles/h5copy_ref.out.ls M tools/h5stat/testh5stat.sh.in M tools/h5stat/h5stat.c
* [svn-r22434] Description:Quincey Koziol2012-06-042-12/+11
| | | | | | | | Correct misspelled debugging #ifdef and remove unused variable. Tested on: Mac OS X/64 10.7.4 (amazon) w/serial (too minor to require h5committest)
* [svn-r22428] Snapshot version 1.8 release 10 (snap2)HDF Tester2012-06-041-2/+2
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* [svn-r22414] Snapshot version 1.8 release 10 (snap1)HDF Tester2012-05-281-2/+2
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* [svn-r22383] Snapshot version 1.8 release 10 (snap0)HDF Tester2012-05-211-2/+2
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* [svn-r22379] make the file and memory MPI datatypes as default properties in theMohamad Chaarawi2012-05-184-59/+26
| | | | | DXPL so that we don't have to insert and remove them everytime we perform collective I/O.
* [svn-r22376] add a test to expose a memory leak when adding/removing the ↵Mohamad Chaarawi2012-05-181-1/+5
| | | | | | same property in property list multiple times. fix that bug.
* [svn-r22370] Fix for HDFFV-7697Dana Robinson2012-05-151-1/+1
| | | | | | Minor change to error message text in H5R.c. Minor change: tested on jam
* [svn-r22325] Description:Quincey Koziol2012-04-291-1/+1
| | | | | | | | | | Bring r22324 from trunk to 1.8 branch: Change name of MPE log file produced from "cpilog" (which was the name used in the example code we were referencing) to "h5log". Tested on: None, too trivial, eyeballed only...
* [svn-r22313] Description:Quincey Koziol2012-04-231-0/+1
| | | | | | | | | | Bring r22312 from trunk to 1.8 branch: Correct error reported by user (Martin Otte) where we weren't using realloc'ed buffer in MPI datatype code. Tested on: Mac OSX/64 10.7.3 (amazon) w/parallel
* [svn-r22291] Description:Quincey Koziol2012-04-1737-2506/+2534
| | | | | | | | | | Bring r22287 from trunk to 1.8 branch: Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22282] Issue 7934 - The data sieve buffer size was for all the ↵Raymond Lu2012-04-122-7/+28
| | | | | | | | | | | | datasets in the file. It could waste memory if any dataset size is smaller than the sieve buffer size. Now the library picks the smaller one between the dataset size and the sieve buffer size from the file access property. (There is no change to hl/ and fortran/ directories. They were property changes during the merge from the trunk) Tested on jam, koala, and ostrich.
* [svn-r22268] Update 1.8 branch version to 1.8.10-snap0Mike McGreevy2012-04-092-4/+4
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* [svn-r22259] Snapshot version 1.8 release 9 (snap16)HDF Tester2012-04-091-2/+2
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* [svn-r22252] Fixed a bug in H5Ocopy(): When copying an opened object, call ↵Vailin Choi2012-04-058-12/+90
| | | | | | | | | | | | | | | | | | | | | the object's flush class action to ensure that cached data is flushed so that H5Ocopy will get the correct data. (HDFFV-7853) this line, and those below, will be ignored-- _M . M test/objcopy.c M src/H5Ocopy.c M src/H5Goh.c M src/H5Dint.c M src/H5Opkg.h M src/H5Doh.c M src/H5Toh.c M src/H5O.c M src/H5Dpkg.h M release_docs/RELEASE.txt _M fortran
* [svn-r22239] Description:Quincey Koziol2012-04-0211-160/+486
| | | | | | | | | | | | | | | | | | | Bring r22233 from trunk to 1.8 branch: Correct several errors in fractal heap code: root indirect block was getting pinned/protected more than once, "single" free space sections weren't getting "re-parented" correctly when the heap transitioned between having a root indirect block and a root direct block, and several related issues. Also cleaned up some warnings in library/tests. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22234] Snapshot version 1.8 release 9 (snap15)HDF Tester2012-04-021-2/+2
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* [svn-r22231] Description:Quincey Koziol2012-04-011-0/+2
| | | | | | | | | | | | | | | Bring r22229 from trunk to 1.8 branch: Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the bin/reconfigure script. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22228] Description:Quincey Koziol2012-04-0126-271/+1230
| | | | | | | | | Bring r22219 from trunk to 1.8 branch: (with release manager's blessing) Merge "file image" changes from feature branch back to trunk. Tested on: h5committested
* [svn-r22215] Description:Quincey Koziol2012-03-3126-141/+1397
| | | | | | | | | | | Bring r22171 from trunk to 1.8 branch: Bring "merge committed datatypes during H5Ocopy" feature from branch to trunk. (Also has some minor bugfixes with it) Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* [svn-r22212] Brought r22211 from the trunkDana Robinson2012-03-301-330/+344
| | | | | | | | | | | STDIO VFD fixes (HDFFV-7917). Mainly Windows correctness issues (propagated from the SEC2 VFD and the old Windows VFD) and issues where large files are accessed. Tested on: 64-bit Mac OS-X 64-bit Windows 7 jam koala ostrich
* [svn-r22210] Purpose:Mike McGreevy2012-03-301-2/+2
| | | | | | | | | | | Merge fix for HDFFV-944 (r22149) from trunk to hdf5_1_8. (Also reran bin/reconfigure which updated trace information for the two new MPI functions for getting/setting atomicity in src/H5Fmpi.c) Tested: h5committest
* [svn-r22186] MinGW compile issues fixed.Allen Byrne2012-03-293-2/+12
| | | | Tested: windows (big test using stdio only fails - this will be filed for further investigation)
* [svn-r22179] Pulled trunk r22178 into 1.8 branch:Dana Robinson2012-03-291-10/+1
| | | | | | | Fixed a bad merge where truncate was called twice in the core VFD. Minor change: tested on jam, koala, ostrich and 64-bit Windows 7 with the core VFD set.
* [svn-r22174] Port r22173 from trunk to 1.8 branchNeil Fortner2012-03-282-2/+14
| | | | | | | | | | | | | | | | | | Purpose: Fix HDFFV-7762 Description: When copying an object with attribute creation order tracked, the attribute creation order was not copied correctly to the destination file, causing an error if the creation order was also indexed (due to attempting to insert duplicate keys) or incorrect creation orders otherwise. Fixed to copy the creation order correctly. Also fixed the attribute character set not being copied, and fixed an issue where an attribute opened with H5Aopen (or similar, but not by_idx), from an object using the latest format but without creation order being tracked, would always report the creation order as 0 (and marked as valid). Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22159] Propagated Windows and POSIX correctness fixes from the SEC2 ↵Dana Robinson2012-03-271-104/+163
| | | | | | | | | | | VFD to the core VFD. This mainly affects backing store I/O and fixes a bug on Windows where files > 2 GB could not be opened. Fixes/completes: HDFFV-7603 (Can't open files > 2 GB on Windows) HDFFV-7916 (Windows/POSIX correctness fixes) Tested on: jam, ostrich, koala, loyalty, 64-bit Mac OS-X Lion, 64-bit Windows 7
* [svn-r22157] Merge the atomicity routines from the trunkMohamad Chaarawi2012-03-274-0/+184
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* [svn-r22156] Issue 7785 - Writing or reading many small chunks ran out of ↵Raymond Lu2012-03-272-1/+3
| | | | | | | | memory and caused seg fault. I added checks in two places to make sure the library returns error stack when it fails to allocate memory. I didn't add any test to the test suite since there is no good way to test it. But I tested and verified the error stack by hand. Tested on jam - this is a merge from the trunk.
* [svn-r22148] Removed incorrect executable svn properties from text, source, ↵Dana Robinson2012-03-269-0/+0
| | | | in, and HDF5 files.
* [svn-r22145] #Issue 7922 - H5Pset_data_transform had seg fault with some ↵Raymond Lu2012-03-262-32/+170
| | | | | | | | | operations like x*-100. The parser mistaked "-" as substraction. I fixed it and also fixed another problem with some special cases like 100-x and 2/x. This is a merge from the trunk. Tested on jam, koala, and ostrich.
* [svn-r22141] Snapshot version 1.8 release 9 (snap14)HDF Tester2012-03-261-2/+2
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