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* [svn-r17266] Description:Quincey Koziol2009-07-3013-27/+32
| | | | | | | | | Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r17265] Description:Quincey Koziol2009-07-294-30/+23
| | | | | | | | | | | | Bring r17264 from trunk to 1.8 branch: Refine how we store the chunk index address in the layout storage structure. Tested on: FreeBSD/32 6.3 (duty) debug Mac OS X/32 10.5.7 (amazon) debug & production Too minor to require h5committest
* [svn-r17262] Description:Quincey Koziol2009-07-298-127/+157
| | | | | | | | | | | Bring r17261 from trunk to 1.8 branch: Refactoring dataset layout information to segregate the constant items from the variable items (at least from a storage standpoint). Tested on: FreeBSD/32 6.3 (duty) (h5committest performed on trunk)
* [svn-r17244] Description:Quincey Koziol2009-07-279-327/+607
| | | | | | | | | | | Bring r17243 from trunk to 1.8 branch: Refactor how the layout message is created/written/read in the dataset's object header. Tested on: FreeBSD/32 6.3 (duty) in debug mode (change h5committested on trunk)
* [svn-r17231] Description:Quincey Koziol2009-07-237-53/+74
| | | | | | | | | Bring r17230 back from trunk to 1.8 branch: Various minor tuneups noticed in working on the revise_chunks branch. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production full testing done on trunk before bringing change back.
* [svn-r17208] Fixed a small bug in the fractal heap code involving filtered ↵Neil Fortner2009-07-211-1/+1
| | | | | | fractal heaps. Tested: jam, linew, smirom (h5committest)
* [svn-r17186] The ret_value is a (H5A_t *) but FAIL was used. This typo ↵Albert Cheng2009-07-151-1/+1
| | | | | | | | | | | | caused a warning from Linux gcc but resulted in error by AIX xlc compiler. Solution: Changed FAIL to NULL. Tested: Just compiling in the AIX system.
* [svn-r17181] Minor fix - The way that H5Tset_size checks whether the ↵Raymond Lu2009-07-141-1/+1
| | | | | | | | datatype is a string wasn't correct. I changed it to use the macro H5T_IS_STRING. Tested on jam - simple change.
* [svn-r17180] In my last round of checkin (r17176), I forgot to clean up some ↵Raymond Lu2009-07-141-5/+0
| | | | | | | | code. I'm checking in the fix now. Tested on jam - simple change.
* [svn-r17176] In H5Odtype.c, the decoding function used to mark the datatype ↵Raymond Lu2009-07-139-9/+58
| | | | | | | | | | as on disk. I changed it to undefined and let the caller functions decide the location of the datatype. For H5Tdecode, it should mark the datatype as in memory. For other callers like H5Dopen or H5Aopen, they should makr it as on disk. Tested it on jam, smirom, linew.
* [svn-r17158] Snapshot version 1.8 release 3 (snap4)Larry Knox2009-07-061-2/+2
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* [svn-r17153] Description:Quincey Koziol2009-07-032-2/+3
| | | | | | | | | | | Bring r17152 from trunk to 1.8 branch: Clean up some minor formatting and misc. errors noticed while working on fixed array code merge. Tested on: Mac OS X/32 10.5.7 (amazon) Too minor to require h5committest
* [svn-r17150] Description:Quincey Koziol2009-07-0210-90/+194
| | | | | | | | | | | | | | | | | | | | | | | | Bring r17148:17149 from trunk into 1.8 branch: Refactor how chunked dataset information is computed, moving it earlier and avoiding more recomputation. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17147] Description:Quincey Koziol2009-07-0214-189/+300
| | | | | | | | | | | Bring r17146 from trunk to 1.8 branch: Bring a bunch of misc. improvements & tweaks from the revise_chunks branch back to the trunk, so that future merges won't be so painful. Tested on: FreeBSd/32 6.3 (duty) (h5committested on trunk)
* [svn-r17139] Description:Quincey Koziol2009-07-016-11/+75
| | | | | | | | | | | | Bring r17138 from trunk into 1.8 branch: Disable use of temporary file space allocation when using a parallel VFD, until we've made changes to broadcast the new address of the metadata when it is relocated down into 'normal' file space. Tested on: Mac OS X/32 10.5.8 (amazon) (h5committested on trunk)
* [svn-r17134] Snapshot version 1.8 release 3 (snap3)Larry Knox2009-07-011-2/+2
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* [svn-r17124] Bug fix #1513. Reading an empty attribute caused seg fault. ↵Raymond Lu2009-06-264-23/+1
| | | | | | | | | | | | The flag "initialized" in the attribute structure wan't set correctly. It caused some confusion in H5A_read. This flag was actually redundant because the library can alwasy check if the data buffer is present. To fix it, I removed the "initialized" flag in the attribute structure and let H5A_read check the data buffer. I tested it on jam only but have tested the same change for the trunk on jam, smirom, and linew.
* [svn-r17109] Purpose: Fix bug in H5Z_filter_infoNeil Fortner2009-06-251-1/+1
| | | | | | | | | | | Description: Previously, when H5Z_filter_info was called for a filter that was not present, it would succeed and return the information from one position past the end of the pipeline, possibly causing a segfault. This affected at least H5Pget_fitler_by_id1/2, and possibly other API functions. Fixed to properly return failure. Tested: jam, linew, smirom (h5committest)
* [svn-r17084] Description:Quincey Koziol2009-06-184-114/+350
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17038-17039,17045,17062 from trunk to 1.8 branch: Switch fractal heap direct & indirect blocks to use temp. space alloc. Improvements to metadata accumulator Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17083] Description:Quincey Koziol2009-06-1810-6/+180
| | | | | | | | | | | | | | | | | | | | | | | Bring r17010,17017,17021-17022,17029-17031,17035 back from trunk: "temporary" file allocation space changes. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17048] Snapshot version 1.8 release 3 (snap2)Larry Knox2009-06-141-2/+2
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* [svn-r17036] Updated perf_serial test to work on windows. Bring back from trunk.Allen Byrne2009-06-113-1/+61
| | | | | Tested: Windows
* [svn-r17026] Purpose: fix bug 1593Neil Fortner2009-06-101-98/+102
| | | | | | | | | | | | Description: When using H5T_copy on committed datatypes that are already open, H5T_copy would properly use the already existing shared struct, but would still deep copy all of the fields in that struct. This would cause memory leaks, and in the case of a compound containing a vlen (or reference), the change in size would cause the size of the resulting type to be set to an incorrect value. Changed H5T_copy to properly avoid deep copies when using a reopened shared struct. Tested: jam, linew, smirom (h5committest), purify on jam
* [svn-r17013] Snapshot version 1.8 release 3 (snap1)Larry Knox2009-06-071-2/+2
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* [svn-r17004] Description:Quincey Koziol2009-06-045-42/+67
| | | | | | | | | | | | | | Bring r17002 from trunk to 1.8 branch: Rename H5O_protect/H5O_unprotect to be H5O_pin/H5O_unpin, since that's what that are actually doing. Add counter of the number of times the object header is pinned, to allow H5O_pin/H5O_unpin to be called reentrantly. Tested on: Mac OS X/32 10.5.7 (amazon) w/debug & prod h5committest already run for trunk version of change
* [svn-r16993] Snapshot version 1.8 release 3 (snap0)Larry Knox2009-06-011-2/+2
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* [svn-r16987] Description:Quincey Koziol2009-05-273-45/+43
| | | | | | | | | Bring r16986 from trunk to 1.8 branch: Clean up formatting & error reporting. Tested on: Mac OS X/32 10.5.7 (amazon) (h5committest done on trunk)
* [svn-r16974] Description:Quincey Koziol2009-05-212-14/+8
| | | | | | | | | | Bring r16973 back from trunk to 1.8 branch: Refactor chunk cache entry information to remove some [actually] unused fields. Tested on: <tested on trunk>
* [svn-r16939] Purpose:Mike McGreevy2009-05-122-2/+38
| | | | | | | | | | | | | | | | | | Modifying default cache configuration, and adding an #ifdef to allow for a separate default configuration when parallel is enabled. This is being modified in order to address an observed performance problem with the current default configuration. Description of Changes: - increasing maximum cache size from 16MB to 32MB - increasing maximum entry size from 10MB to 32MB - decreasing min_clean_fraction from 0.3 to 0.01 in serial case - increasing flash_multiple from 1.0 to 1.4 in serial case Tested: jam
* [svn-r16922] Allow an error class to use other class's major or minor ↵Raymond Lu2009-05-051-2/+3
| | | | | | errors. Added a test for it, too. Tested on jam - simple change. I've tested it for the trunk.
* [svn-r16920] Description:Quincey Koziol2009-05-0529-140/+1735
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge these trunk revisions which occurred during the 1.8.3 release code freeze back to the 1.8 branch: From Quincey: 16845 16847 16849 16851 16858 16869 16897 From Ray: 16859 16880 From Allen: 16863 Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16917] Maintenance: Changed suffix in the version number to snap0.Elena Pourmal2009-05-041-2/+2
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* [svn-r16916] Maintenance: Updated HISTORY-1_8.txt and RELEASE.txt files and Elena Pourmal2009-05-041-2/+2
| | | | | changed version to 1.8.0-post0. Branch is open for check-ins now.
* [svn-r16893] Set version information to 1.8.3 to be ready for release.Albert Cheng2009-04-291-2/+2
| | | | Tested: h5committest plus jam serial test.
* [svn-r16855] Maintenance: Changed version to hdf5-1.8.3-pre2 for further ↵Elena Pourmal2009-04-241-2/+2
| | | | check-ins.
* [svn-r16853] Maintenance: Changed version number to 1.8.3-pre1 and created a ↵Elena Pourmal2009-04-243-5/+5
| | | | | | tar ball for remote testing.
* [svn-r16830] Bug fix.Albert Cheng2009-04-211-1/+1
| | | | | | | | | | | | | | | | In Up (AIX system), the insert_libhdf5_settings() infinite looped because it never found EOF. Man getc in another system said: "If the integer value returned by getc() is stored into a variable of type char and then compared against the integer constant EOF, the com- parison may never succeed, because sign-extension of a variable of type char on widening to integer is implementation-defined." Solution: Changed inchar from type char to int fixed the problem. Morale of the story: RTFM or HTCW (heed the compiler warnings). Tested: Up (AIX 5.3).
* [svn-r16818] Fix problem in H5Z.c with --disable-deprecated-symbolsNeil Fortner2009-04-211-0/+6
| | | | Tested: jam (--disable-deprecated-symbols)
* [svn-r16813] New feature(Bug 230):Albert Cheng2009-04-202-0/+67
| | | | | | | | | | | | | | | | | | | | | | | | Embed the content of libhdf5.settings into the hdf5 executables so that an "orphaned" executables can display (via the Unix strings command, for example) the library settings used to build the executables. This is a prototype implementation. Much improvement is needed. configure.in: Added the --disable-embedded-libinfo option to disable this feature. configure: src/H5config.h.in: Generated by autotools like automake. src/H5detect.c: Implement insert_libhdf5_settings() to insert the contents of libhdf5.settings into the library as an extern string variable so that it is included in all HDF5 executable. Much improvement is needed. fortran/src/Makefile.in: Auto-generated by bin/reconfigure. (i.e., I did make any changes to cause its direct regeneration). Tested: Jam serial, using default and --disable-embedded-libinfo, configure options.
* [svn-r16808] Purpose: Fix bug 1533Neil Fortner2009-04-2015-43/+105
| | | | | | | | | | | Description: Previously, there was no versioning for H5Z_class_t. This prevented applications written for 1.6 using custom filters from being able to use the 1.8 library. There is now an H5Z_class1_t and H5Z_class2_t to enable compatibility. H5Zregister is *not* versioned, it determines which version of the struct has been passed in by the value of the first field (id or version, both are ints). Tested: jam, linew, smirom (h5committest), jam (--with-default-api-version=v16)
* [svn-r16804] Purpose: Fix bug 1548Neil Fortner2009-04-202-32/+33
| | | | | | | | | Description: When writing data to a dataset, the data transform was performed after type conversion. This caused an error if the file type was non-native. This has been changed so data transforms are always performed on the memory type. Tested: jam, linew. smirom (h5committest)
* [svn-r16793] Description:Mike McGreevy2009-04-201-4/+4
| | | | | | | | | | | | - Updated bin/reconfigure to use latest version of automake (1.10.2). Regenerated Makefile.in's by running bin/reconfigure. - Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran libraries. Tested: jam, liberty, smirom
* [svn-r16767] Fix a comment in H5Pdapl.c, update RELEASE.txt with chages to ↵Neil Fortner2009-04-161-1/+1
| | | | | | | | factory free lists. Tested: kate
* [svn-r16743] Added #include <direct.h> to windows section. As discussed in ↵Allen Byrne2009-04-141-0/+1
| | | | | | Bug 1536, this include is needed to supply the _getcwd() function. Tested: XP 32 VS2005
* [svn-r16740] Snapshot version 1.8 release 2 (post12)Larry Knox2009-04-121-2/+2
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* [svn-r16731] Purpose: Fix bug 1539bNeil Fortner2009-04-101-0/+3
| | | | | | | | | | Description: The H5L interface was not marked as uninitialized when H5L_term_interface was called. This caused the interface to not initialize itself later on. This prevented external links from working after calling H5close, because they were never re-registered. Tested: jam, smirom, linew (h5committest)
* [svn-r16725] Snapshot version 1.8 release 2 (post11)Larry Knox2009-04-101-2/+2
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* [svn-r16722] Purpose: Fix problems with "no strict format checks"Neil Fortner2009-04-092-21/+46
| | | | | | | | | | Description: Changed H5G_mkroot to be tolerant of files with symbol table information cached but no symbol table in the root group. Also changed H5G_mkroot to properly clean up in case of an error, and changed H5G_stab_is_valid to properly detect errors in H5O_msg_read. Tested: jam, linew, smirom (h5committest), jam (--disable-strict-format-checks)
* [svn-r16712] Purpose: Fix bug 1423Neil Fortner2009-04-0814-314/+474
| | | | | | | | | | | | | | Description: Versions of the library between 1.3.0 and 1.6.3 have a bug which prevents them from opening any file that does not have the root group's symbol table information cached in the root group's entry in the superblock. Prior to 1.8 this was not an issue as this information was always cached. However, 1.8.0 stopped writing this information (which is not required by the file format specification), and these older versions can therefore not read files created or last written by versions 1.8.0 to 1.8.2. This fix modifies the library to once again add this information to the superblock (when using the old file format). Tested: jam, linew, smirom (h5committest)
* [svn-r16705] Snapshot version 1.8 release 2 (post10)Larry Knox2009-04-081-2/+2
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