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* [svn-r17888] Description:Quincey Koziol2009-11-142-38/+127
| | | | | | | | | | | Bring r17887 from trunk to 1.8 branch: Convert dense attribute storage to use refactored v2 B-tree routines. Also fix some minor typos in the dense group handling code. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5commitested on trunk)
* [svn-r17886] Description:Quincey Koziol2009-11-1310-122/+176
| | | | | | | | | | | | | | | | | Bring r17885 from trunk to 1.8 branch: Convert 'huge' fractal heap object management code to use refactored v2 B-tree routines. Also, switch internal representation of 'sizeof_addr' and 'sizeof_size' in files to be uint8_t's instead of size_t's, since they are stored in single bytes in the file format. Various other minor compiler warning cleanups and error call tweaks. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk
* [svn-r17874] Description:Quincey Koziol2009-11-131-46/+113
| | | | | | | | | | | Bring r17873 from trunk to 1.8 branch: Change dense group storage to use refactored v2 B-tree interface. Also tweak dimension sizes for dataset in test down so it doesn't blow out the stack. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17864] Description:Quincey Koziol2009-11-101-7/+4
| | | | | | | | | | | | | | | | | | | | | | | Bring r17863 from trunk to 1.8 branch: Switch HSYS_GOTO_ERROR() & HSYS_DONE_ERROR() macros to use printf-like functionality for displaying system error messages. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17862] Description:Quincey Koziol2009-11-106-23/+131
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17860 from trunk to 1.8 branch: "Normalize" object names for external links, making them into the same form as used for soft links. Begin the process of adding more printf-like information to library error reporting. HGOTO_ERROR() and HDONE_ERROR() macros can now use the last parameter (a string) like a printf() formatting string and pass extra parameters with additional information. (For example, see the HGOTO_ERROR macros in H5FD_sec2_read() in src/H5FDsec2.c) Bring the underlying H5E_printf_stack() routine from trunk to 1.8 branch also. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17849] Description:Quincey Koziol2009-11-075-34/+260
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17848 from trunk to 1.8 branch: Further refactoring v2 B-trees so that they can get context to the encode/decode client callbacks: - Switch tests to using refactored routines Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17843] Description:Quincey Koziol2009-11-0511-52/+180
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17842 from trunk to 1.8 branch: Further refactor v2 B-tree code toward being able to pass context info down to encode/decode client callbacks: - Separate H5B2_create call to return H5B2_t structure - Make loading the v2 B-tree header pick up the client class from the ID stored in the file. Simplify some internal API calls as a result. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17839] Description:Quincey Koziol2009-11-0517-479/+844
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17838 from trunk to 1.8 branch: Further refactoring of v2 B-tree code, moving toward being able to pass a context information to a client's encode/decode callbacks. Also, clean up of other minor compiler warnings and code formatting issues. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17814] Description:Quincey Koziol2009-11-031-1/+1
| | | | | | | Correct 'src' to 'dst' in error message for H5D_read. (Bz#1683) Tested on: Eyeballed only - too minor to require h5committest
* [svn-r17807] Description:Quincey Koziol2009-11-0329-1218/+1701
| | | | | | | | | | | | | | | | | | | | | | | Bring r17623 from trunk to 1.8 branch: Bring "compress group's fractal heap" feature from feature branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17786] Description:Quincey Koziol2009-10-2911-293/+636
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17749 & 17785 from trunk to 1.8 branch: 17749: Refactor v2 B-tree code to bring it further in line with how the fractal heap code works, to make forthcoming modificaions easier. Also minor tweaks to the fractal heap code to clean it up a bit more also. 17785: Further refactor v2 B-tree code to bring it closer to modern data structure designed in the library, mainly by introducing a H5B2_t type so that the v2 B-tree could be held open, but not require the B-tree header to be protected the whole time. A few other minor tweaks as well. Also, remove unused 'dirty' flag from fractal heap header. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17779] Description:Quincey Koziol2009-10-281-2/+2
| | | | | | | | | | Bring r17778 from trunk to 1.8 branch: Make check for NULL dataspace a bit safer. Tested on: FreeBSD/32 6.3 (duty) (too minor for h5committest)
* [svn-r17766] Purpose: Fix bug 1483Neil Fortner2009-10-282-14/+24
| | | | | | | | | | | | Description: H5HG_load made improper assumptions about the ordering of object indices, namely that they are in order. Not only is this not guaranteed by the file format spec, but this condition can be violated if id's "wrap around" which can happen when overwriting VL data. H5HG_load has been fixed to handle any order of indices. Also fixed some other bugs involving allocation of global heaps in memory. Tested: jam, linew, amani (h5committest)
* [svn-r17762] Purpose: Fix problem with H5TB APINeil Fortner2009-10-274-163/+85
| | | | | | | | | | | Description: The H5TB API makes some improper assumptions about the order of compound datatype members. Namely, it assumes that members remain in the order in which they were inserted. Unfortunately, this assumption is inherent in the design of the interface. The library has been patched so that this assumption holds in situations relevant to H5TB. Tested: jam, linew, amani (h5committest)
* [svn-r17757] Purpose: Fix assertion failure caused by H5Tcommit1/2Neil Fortner2009-10-271-4/+4
| | | | | | | | | Description: Calling H5Tcommit_anon on a file with read only access would cause an assertion failure. Added a check to H5T_commit to return a failure in this case. Removed redundant check in H5T_commit_named. Tested: Fedora 11 (very minor change)
* [svn-r17754] Purpose: Fix assertion failure caused by H5Tcommit1/2Neil Fortner2009-10-271-0/+4
| | | | | | | | | Description: Calling H5Tcommit1 or H5Tcommit2 on a file with read only access would cause an assertion failure. Added a check to H5T_commit_named to return a failure in this case. Tested: Fedora 11 (very minor change)
* [svn-r17741] Description:Quincey Koziol2009-10-2417-206/+213
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17740 from trunk to 1.8 branch: Refactor v2 B-tree code to take creation parameters to H5B2_create() as a struct (instead of individual arguments), call the client's class "cls" instead of "type" internally, and add client class name to client class struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17739] Description:Quincey Koziol2009-10-231-1/+7
| | | | | | | | | | | | | | | | | | | | | | | | Bring r17737 from trunk to 1.8 branch: Fix error in dataset's chunk index v1 B-tree debugging code to correctly pass userdata down to B-tree cache load routine. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17738] Description:Quincey Koziol2009-10-2311-1428/+1485
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring revisions 17649, 17657 and 17658 from trunk to 1.8 branch: 17649: Refactor v2 B-trees to pin the B-tree header in the cache instead of using separate reference counted data structure. 17657: Refactor the v2 B-tree code to use an open & close call internally, in preparation for making those part of the library private APIs for dealing with v2 B-trees. 17658: Rename 'H5B2_t' -> 'H5B2_hdr_t' and 'bt2' -> 'hdr' in preparation for make v2 B-tree open/close routines library private (instead of static). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17709] Maintenance: Changed version number to 1.8.4-snap0Elena Pourmal2009-10-212-4/+4
| | | | Updated RELEASE.txt and HISTORY.txt file accordingly.
* [svn-r17677] Snapshot version 1.8 release 3 (snap13)Larry Knox2009-10-191-2/+2
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* [svn-r17645] Purpose:Mike McGreevy2009-10-153-17/+34
| | | | | | | | | | | | | | | Merge from Trunk Description: Merging all of my CFLAGS-related changes from trunk to 1.8 This includes revision #s: 17616, 17625, 17627, 17639, and 17643. Tested: h5committest and some additional checks on our FreeBSD as well as NCSA's machines.
* [svn-r17638] Description:Quincey Koziol2009-10-131-62/+8
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17624 from trunk to 1.8 branch: Don't allow reads to change or add to the metadata accumulator, since they might be speculative and could bring raw data into the metadata accumulator. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17610] Bug fix (ID 1628):Albert Cheng2009-10-081-1/+1
| | | | | | | | | There was a typo in the H5Pget_preserve that it was returning the wrong value. Fixed. Also added a test in test/cmpd_dset.c to verify the correctness of H5Pset_preserve and H5Pget_preserve. Tested: h5committest plus jam serial.
* [svn-r17605] Description:Quincey Koziol2009-10-072-25/+52
| | | | | | | | | | | Bring r17604 from trunk to 1.8 branch: Correctly invoke generic property list class callbacks all the way to the root of the class hierarchy. Tested on: FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committested on trunk)
* [svn-r17600] Description:Quincey Koziol2009-10-064-6/+6
| | | | | | | | | | | Bring r17599 from trunk to 1.8 branch: Minor code cleanups, based on cleanups in the compress_group_fheap branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17586] Purpose: Fix bug 1597Neil Fortner2009-10-024-50/+51
| | | | | | | | | | | Description: When copying a dataset using a vlen inside a compound, the various dataset copying callbacks would allocate a background buffer but would not use it when converting from disk to memory, only memory to disk. This caused an assertion failure as compounds always need a background buffer. These callbacks have been modified to use the background buffer for both conversions. Tested: jam, linew, smirom (h5committest)
* [svn-r17572] Purpose:Mike McGreevy2009-10-012-2/+2
| | | | | | | | | | | | | | Makefile Bug Fix Description: Added $(EXEEXT) extension to H5detect when it's executed to generate H5Tinit.c so it works correctly on platforms that require the full extension when running executables. Tested: h5committest, mingw, and user-verified (via submitted patch).
* [svn-r17555] Description:Quincey Koziol2009-09-2912-125/+266
| | | | | | | | | | | | | | | | | | | | | | | | Bring r17553 from trunk to 1.8 branch: Bring general fixes/improvements from file_free_space branch back to trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17548] ↵Albert Cheng2009-09-291-8/+8
| | | | | | | | | | | | | | | | ------------------------------------------------------------------------ r17543 | acheng | 2009-09-28 23:43:22 -0500 (Mon, 28 Sep 2009) | 8 lines New test: (Bug ID 1656): Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version() does issue warnings and abort accordingly. Changed H5check_version() to suppress the warning message totally if $HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher the same as 1, that is to print a warning and allows the program to continue. Tests: H5committed tested plus jam serial tested.
* [svn-r17540] Snapshot version 1.8 release 3 (snap12)Larry Knox2009-09-271-2/+2
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* [svn-r17536] Purpose: Fix bug 1620Neil Fortner2009-09-251-2/+2
| | | | | | | | | Description: H5Ppublic.h listed H5Pget_filter_by_id1 and H5Pget_filter_by_id2 as returning H5Z_filter_t, when in fact they return herr_t. The header file has been corrected to indicate that they return herr_t. Tested: jam
* [svn-r17531] Purpose: Fix bug 1555Neil Fortner2009-09-251-4/+4
| | | | | | | | | | | | | Description: At several places in H5Pint.c properties were being compared using memcmp, not using the registered "cmp" callback. This could cause memory checkers to report uninitialized memory errors, and could conceivably cause runtime errors if memcmp reported false equality (for example if a value pointed to by the property changed). The code has been changed to always use the cmp callback. Tests have been added that check this in all the places that previously used memcmp. Tested: jam, linew, smirom (h5committest)
* [svn-r17501] Snapshot version 1.8 release 3 (snap11)Larry Knox2009-09-201-2/+2
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* [svn-r17500] Bug fix and improvement.Albert Cheng2009-09-191-3/+8
| | | | | | | | | | | | Description: Build failed when embedded-info is not enabled. Fixed. testlibinfo.sh output was ugly, did not prepare the case of embedded-info not enabled. Fixed. Also changed NOT to test test binary even if static-exec is enabled. Tested: jam (with and without embedded-info enabled). Did not test in other platforms since these were script changes that are platform independent.
* [svn-r17499] Purpose:Albert Cheng2009-09-183-25/+63
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Stage 2 implementation of embedded library information feature. H5.c: added code to print the embedded library information when there is a library versions mis-match occurs. This ensures the library information string is included in the executable. Also modifies the code so that the Library mismatch warning string is included only once in the executable. H5private.h: Added a global reference to the libinfo string variable to prepare for possible stage 3 implementation of a public API. test/testlibinfo.sh.in: A new test added to verify the library information is indeed included in the executables. configure.in: configure: Added entry to auto-generate test/testlibinfo.sh. H5detect.c: Modified the libhdf5settings generating code to allow it to insert the strings to a file other than stdout. This maybe needed in stage 3 implementation. MANIFEST: updated with the newly added file of testlibinfo.sh.in. Tested: h5committest passed. Also passed jam in serial mode.
* [svn-r17472] Snapshot version 1.8 release 3 (snap10)Larry Knox2009-09-131-2/+2
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* [svn-r17464] Description:Quincey Koziol2009-09-112-26/+39
| | | | | | | | | | | Bring r17463 from trunk to 1.8 branch: Add another regression test for userblock+alignment usage, and correct [another] issue with the combination. *sigh* Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17462] Description:Quincey Koziol2009-09-108-46/+90
| | | | | | | | | | Bring r17461 from trunk to 1.8 branch: Fix a few more problems when the user block is not aligned properly. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17460] Description:Quincey Koziol2009-09-083-24/+29
| | | | | | | | | | | | | | Bring r17459 from trunk to v1.8 branch: Correct bad interaction between non-zero userblocks with non-zero alignments. Also add some additional range checking and tests for invalid userblock sizes. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17453] Snapshot version 1.8 release 3 (snap9)Larry Knox2009-09-061-2/+2
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* [svn-r17439] Purpose:Mike McGreevy2009-08-312-66/+136
| | | | | | | | | | | | | | | | | | | | | | Updating autotools Description: Bring revisions 17345 and 17357 from trunk to 1.8, specifically: - Automake upgraded to 1.11 - Autoconf upgraded to 2.64 - bin/reconfigure script edited to use new versions (on jam), and run to generate new configure script and Makefile.in's. - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings (in order to comply with new autoconf standard). - bin/install-sh script replaced with new version as provided by automake. Tested: - All issues on trunk were resolved, so only tested on jam and linew. Any other outliers should be caught by daily tests.
* [svn-r17437] Snapshot version 1.8 release 3 (snap8)Larry Knox2009-08-301-2/+2
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* [svn-r17433] Description:Quincey Koziol2009-08-271-16/+6
| | | | | | | | | | Bring r17432 from trunk to 1.8 branch: Simplify dataspace cleanup code. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17431] Description:Quincey Koziol2009-08-276-266/+1
| | | | | | | | | | Bring r17429 from trunk to 1.8 branch: Remove unnecessary v2 B-tree 'retrieve' callback from v2 B-tree clients. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17415] Description:Quincey Koziol2009-08-2412-428/+322
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17408, 17411, 17412, 17413 & 17414 from trunk back to 1.8 branch: r17408: Move flush operation on mounted file hierarchy into H5Fmount module. r17411: Make H5AC_flush just flush the cache and make H5AC_dest perform the proper parallel synchronization before destroying the cache. Also, further discriminate between 'closing' and 'non-closing' actions in H5F_flush. r17412: Seperate 'flush' functionality from 'destroy' functionality at the H5F level also. r17413: Remove vestigial intermediate routine for flushing file and move it into API routine. Also, remove private, unused (now) 'H5F_FLUSH_DOWN' symbol from public header file. r17414: Flush the core VFD's buffer before closing the file, also flush the metadata accumulator before reseting it. Write the driver info message out in the superblock flush routine more directly, instead of using wrapper routine, since the wrapper routine won't work when the superblock is being shutdown. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17410] Snapshot version 1.8 release 3 (snap7)Larry Knox2009-08-231-2/+2
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* [svn-r17404] Description:Quincey Koziol2009-08-2110-63/+53
| | | | | | | | | | | | | | | | | | | | | | Bring r17402 & r17403 from trunk to 1.8 branch: r17402: Switch from using a 'flags' parameter to the flush routine(s), to just using a single 'closing' boolean parameter, since that's all we're doing with the flags anyway and this makes things more obvious. r17403: Eliminate 'closing' flag to dataset flush routine, since all cached dataset information has already been flushed when a file is closed and the datasets themselves will be closed (and the dataset caches destroyed). Skip calling more flush routines when the file is closing, in preparation for eventual separation of the 'flush' concept from the 'shutdown the cache' concept. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17401] Description:Quincey Koziol2009-08-213-43/+77
| | | | | | | | | | | | | | | Bring r17400 from trunk to 1.8 branch: Refactor H5F_flush into two routines, one which handles the recursion/ iteration necessary to handle mounted files; and one which just handles the flush operation for a single file. Also, remove H5F_FLUSH_INVALIDATE and switch all code to depend on H5F_FLUSH_CLOSING. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17399] Description:Quincey Koziol2009-08-208-113/+118
| | | | | | | | | | | | | Bring r17393 and r17398 from trunk to 1.8 branch: Bring back more changes from the file free space branch to the trunk. (17393) First set of changes to move VFD 'truncate' call out of H5F_flush and defer it until the file is closed. (17398) Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
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