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* [svn-r14031] Bug fix. Chunk address wasn't passed into some I/O functions ↵Raymond Lu2007-07-311-2/+2
| | | | in H5D_chunk_read and H5D_chunk_write. Tested only on liberty because it's a simple change.
* [svn-r14027] Maintenance: changed version number to 1.8.0-beta3post1 using ↵Elena Pourmal2007-07-301-2/+2
| | | | bin/h5vers script
* [svn-r14025] Maintenance: Changed version number to 1.8.0-beta3, put warning ↵hdf5-1_8_0-beta3Elena Pourmal2007-07-301-2/+2
| | | | | | | into INSTALL file for the 1.8.0-beta* releases Tested: Release tar ball is available on the frp server, It was tested on kagiso with the PGI compilers.
* [svn-r14022] Description:Quincey Koziol2007-07-262-1018/+1020
| | | | | | | | | | | | | | | | Remove stray reference to "group revision" configure flag Remove Windows-specific EOL characters from src/H5FDwindows.c Add some missing types to bin/trace Re-run bin/reconfigure script to regenerate information after changes above. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (linux) Solaris/32 2.10 (linew)
* [svn-r14021] Description:Quincey Koziol2007-07-261-13/+17
| | | | | | | | | | Re-ran bin/reconfigure Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Solaris/32 2.10 (linew)
* [svn-r14020] Description:Quincey Koziol2007-07-262-1/+3
| | | | | | | | | | | Correct error in size of v2 B-tree metadata prefix, which could cause too many entries to get inserted into a node, eventually causing either a file corruption bug (if debugging asserts were off) or a core dump on the assertion which checked this. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r14017] Description:Quincey Koziol2007-07-264-182/+193
| | | | | | | | | | | Fix problem with fill value messages where the version of the format for a fill value message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r14015] Refactoring part of the code. Tested only on liberty becauseRaymond Lu2007-07-251-24/+1
| | | | the change is simple.
* [svn-r14012] Description:Quincey Koziol2007-07-248-48/+91
| | | | | | | | | | | | | Fix problem with I/O pipeline messages where the version of the format for a I/O pipeline message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14011] Refactored part of the code in H5T_conv_struct_opt. Tested only Raymond Lu2007-07-241-28/+19
| | | | on smirom because it's a simple change.
* [svn-r14010] Description:Quincey Koziol2007-07-249-84/+239
| | | | | | | | | | | | | | | Fix problem with dataspace messages where the version of the format for a dataspace message could depend on the "use the latest format" flag from the file after it was initially created. Also, move debuging routine into separate file. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14009] Description:Quincey Koziol2007-07-241-2/+2
| | | | | | | | | | | | | Drop use of "use the latest format" flag when encoding SOHM-stored shared messages and just change the version based solely on the type of shared message. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14008] Description:Quincey Koziol2007-07-241-7/+0
| | | | | | | | | | | Minor comment & testing cleanups Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14005] Description:Quincey Koziol2007-07-243-9/+9
| | | | | | | | | | | Rename H5Titerate.c source file to H5Tvisit.c, which is more descriptive of routine(s) in file. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r14004] Description:Quincey Koziol2007-07-2414-492/+889
| | | | | | | | | | | | Fix problem with datatype messages where the version of the format for a datatype message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r14003] Description:Quincey Koziol2007-07-242-8/+7
| | | | | | | | | | Code cleanup & whitespace fixups Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r14002] Description:Quincey Koziol2007-07-241-1/+1
| | | | | | | | | | Fix bug where pointer to variable was used instead of variable itself. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r13997] Moved H5D_istore_lock and H5D_istore_unlock from ↵Raymond Lu2007-07-218-179/+301
| | | | | | | | | H5D_istore_writevv and H5D_istore_readvv to H5D_chunk_write and H5D_chunk_read to avoid frequent lock and unlock and to improve some performance. Tested with h5committest on THG machines.
* [svn-r13993] Description:Quincey Koziol2007-07-211-12/+14
| | | | | | | | Correct error for checking whether an object in a file can be extended when there are no free lists maintained by the VFD. Tested on: FreeBSD/32 6.2 (duty) w/check-vfd
* [svn-r13992] Description:Quincey Koziol2007-07-211-12/+5
| | | | | | | Add some extra logging information to read & write reports. Tested on: FreeBSD/32 6.2 (duty) w/check-vfd
* [svn-r13991] Description:Quincey Koziol2007-07-201-2/+2
| | | | | | | | | Correct error in H5Gcreate() where using a non-zero local heap size hint would overwrite the default group creation property list with the non-zero size hint given, affecting all future groups created. Tested on: FreeBSD/32 6.2 (duty) w/check-vfd
* [svn-r13989] Description:Quincey Koziol2007-07-196-19/+22
| | | | | | | | | | | Rename H5A_get_version() to H5A_set_version() and actually set the attributes version in the routine. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13988] Description:Quincey Koziol2007-07-186-79/+117
| | | | | | | | | Fix bug where the version of an attribute would change after it was created, causing the amount of space used to encode it to change. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13986] Description:Quincey Koziol2007-07-179-23/+34
| | | | | | | | | Add flag to bypass (expensive) B-tree & heap size retrieval for internal calls to H5O_get_info(). Teted on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13984] Description:Quincey Koziol2007-07-1737-739/+707
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-1336-5/+1021
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13972] Description:Quincey Koziol2007-07-132-0/+4
| | | | | | | | | Add --with-default-api-version configure flag. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13971] Description:Quincey Koziol2007-07-123-19/+23
| | | | | | | | | | | | | | Add --enable-deprecated-symbols configure option, to allow users to remove deprecated public API symbols at configure time. Add bin/make_vers script to bin/reconfigure actions. Run bin/reconfigure to regenerate autotool components. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13969] Description:Quincey Koziol2007-07-125-14/+119
| | | | | | | | | | | | | | | | Initial checkin of API version macro generation script (bin/make_vers), along with configuration file (src/H5vers.txt) and generated header (src/H5version.h). Right now, no version macros are defined, since the main source code and tests need to be adjusted to pay attention to the macros defined. Also, fixed makefile for generating error header files when used with GNU make. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13961] Description:Quincey Koziol2007-07-101-45/+30
| | | | | | | | | | Remove some unnecessary code that checks for fill value buffer being NULL. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13945] Description:Quincey Koziol2007-07-051-10/+7
| | | | | | | | | | | | | | Modify semantics for constant messages slightly, to allow them to be deleted, but not modified. This works around the issue where "old" style groups are being created with the symbol table message marked constant in the 1.6 (and prior) branch, but the 1.8 branch needs to remove the symbol table message when the group has been changed to the "new" style (upon insertion of a link that the "old" style can't handle). Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13944] Description:Quincey Koziol2007-07-051-46/+60
| | | | | | | | | Fix problem with VL-datatype fill values when shrinking dataset's dimensions Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13943] Description:Quincey Koziol2007-07-051-13/+19
| | | | | | | | | Allow H5Dset_extent() to reduce the size of dimensions that aren't unlimited Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13942] Description:Quincey Koziol2007-07-053-8/+5
| | | | | | | | | Minor code & comment cleanups Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13935] Description:Quincey Koziol2007-07-031-10/+7
| | | | | | | | | Another minor code cleanup to chunked storage "init by extent" routine. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13933] Description:Quincey Koziol2007-07-031-59/+61
| | | | | | | | | | Finish cleaning up "initialize by extent" routine (used when shrinking a dataset's dimensions) before addressing VL-datatype fill value bug. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13932] Description:Quincey Koziol2007-07-033-124/+125
| | | | | | | | | Move H5Dextend() to the deprecated routine list. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13928] Purpose: 1) Moving H5_CXX_HAVE_OFFSETOF macro to ↵Mike McGreevy2007-06-292-8/+8
| | | | | | | | | | src/H5pubconf.h file. 2) Removing configuration of c++/src/H5cxx_pubconf.h file. Reasoning: the additional pubconf file caused compilation complications, this is cleaner. Tested: kagiso, smirom
* [svn-r13927] Description:Quincey Koziol2007-06-291-63/+64
| | | | | | | | Clean up the chunked storage "initialize by extent" routine, in preparation for fixing another VL-datatype fill value bug. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r13926] Description:Quincey Koziol2007-06-2918-587/+1178
| | | | | | | | | | | | Add small interface to "wrap" a static buffer (usually on the stack), but still allow for buffers larger than the static buffer to be allocated. This can eliminate _many_ short-lived buffer allocations in situations where the buffer is a predictable size (or at least a "very likely" size). Also, some minor code cleanups, particularly in the SOHM caching code. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-282-10/+11
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13919] Description:Quincey Koziol2007-06-261-57/+14
| | | | | | | | | Clean up more redundant code for reading SOHM messages. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13918] Description:Quincey Koziol2007-06-268-786/+872
| | | | | | | | | | Refactor fill value buffer code into one location, for better long-term maintenance. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13917] Description:Quincey Koziol2007-06-263-4/+5
| | | | | | | | | Code & warning cleanups Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13916] Purpose: Fix MinGW inconsistencyScott Wegner2007-06-261-0/+4
| | | | | | | | | | Description: Windows does not accept the buffer size parameter of setvbuf to be less than 2. Previously, we had our fix split between two files, H5private.h and the Windows H5pubconf.h. This was a problem for MinGW, because it generates its own H5private.h. This moves the fix out of H5pubconf.h and into H5private.h. This shouldn't affect other platforms. Tested: MinGW on WinXP
* [svn-r13915] Description:Quincey Koziol2007-06-262-68/+78
| | | | | | | | | Clean up SOHM code, to copy message in H5HF_op call instead of separate calls to H5HF_get_obj_len() and H5HF_read(). Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago)
* [svn-r13913] Maintenance after beta2 release: used bin/h5vers script to ↵Elena Pourmal2007-06-251-2/+2
| | | | change version number to 1.8.0-beta2poat1
* [svn-r13909] Mainetnance before createing beta2 tar ballhdf5-1_8_0-beta2Elena Pourmal2007-06-251-2/+2
| | | | Changed version number to 1.8.0-beta2
* [svn-r13893] Maintenance: Bump up version to beta2pre2 after creating a tar ↵Elena Pourmal2007-06-201-2/+2
| | | | ball for remote testing
* [svn-r13892] Maintenance: Changed library version to beta2pre1 in ↵Elena Pourmal2007-06-201-2/+2
| | | | | | | preparation for remote testing for the HDF5 1.8.0-beta2 release Platforms tested: kagiso (small change done by bin/h5vers script)
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