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* [svn-r6033] Snapshot version 1.5 release 39HDF Admin2002-10-261-2/+2
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* [svn-r6030] Purpose:Bill Wendling2002-10-231-403/+11
| | | | | | | | | | Another Oops Description: I accidentally checked in the H5D.c module when I shouldn't have. Solution: Rolled back to 1.281 version Platforms tested: Linux
* [svn-r6029] Purpose:Bill Wendling2002-10-234-14/+409
| | | | | | | | | | | | Oops Description: The H5FPprivate.h file was being #included even if PARALLEL was turned off. Solution: put the #include of the H5FPprivate.h file within the #ifdef block so that it doesn't get included if H5_HAVE_FPHDF5 isn't defined. Platforms tested: Linux...
* [svn-r6028] Purpose:Bill Wendling2002-10-231-2/+2
| | | | | | | | | | | | | | | | Bug Fix Description: The NBYTE{ENCODE,DECODE} macros were updating the pointer "p" to a new value instead of one of the "real" pointers passed into the macro. Solution: Changed it so that it updates the destination pointer which gets passed into these macros. I'm not sure if this is correct, since neither of these macros are actually used in our source code... Platforms tested: They aren't used, so no testing possible.
* [svn-r6026] Purpose:Bill Wendling2002-10-232-27/+41
| | | | | | | | | Feature Add Description: New Makefiles and H5config.h.in file for the Flexible Parallel HDF5 stuff. Platforms tested: Eirene, Arabica, Modi4
* [svn-r6025] Purpose:Bill Wendling2002-10-238-5/+3516
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Feature Add Description: New files for the Flexible Parallel HDF5 stuff. H5FP.c - Module housing the APIs to FPHDF5 H5FPclient.c - Module housing the internal client APIs H5FPserver.c - Module housing the internal server APIs H5FPpublic.h - Header for public APIs H5FPprivate.h - Header for private APIs H5Ofphdf5.c - Way of serializing FPHDF5 information to and from the SAP H5Oplist.c - Way of serializing a generic property list. Solution: [details about the changes, algorithm, etc...] [Please as detail as you can since your own explanation is better than others guessing it from the code.] Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}? [If no, why not?] Other platforms/configurations tested? Misc. update: Update MANIFEST if you add or remove any file. Update release_docs/RELEASE for bug fixes, new features, etc. Update applicable document files too.
* [svn-r6024] Purpose:Bill Wendling2002-10-233-19/+22
| | | | | | | | | Feature Add Description: Moved some functions from having only module scope to having public scope, but only available in the HDF5 internals (not public APIs). Platforms tested: Eirene, Arabica, Modi4
* [svn-r6023] Purpose:Bill Wendling2002-10-232-23/+48
| | | | | | | | | | Feature Add Description: Added some error messages for the Flexible Parallel HDF5 stuff. Platforms tested: Arabica Eirene Modi4
* [svn-r6006] Purpose:Albert Cheng2002-10-151-4/+5
| | | | | | | | | | | | | | | | Bug fix (ID 841) Description: h5dumptst (generating h5dump test files) failed with an assertion error in H5S_select_iterate. H5S_select_iterate did not account for scalar type that has rank=0, thus no dimension sizes. Solution: Put the assertion of valid sizes only after verify rank is larger than 0. (fix is coached by Quincey.) Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}? YES. Misc. update: Update release_docs/RELEASE for bug fixes, new features, etc. YES.
* [svn-r6005] Purpose:Quincey Koziol2002-10-151-18/+49
| | | | | | | | | | | New feature. Description: Added check for "HDF5_DISABLE_VERSION_CHECK" environment variable to disable the version checking code between the headers and the library. Tested: FreeBSD 4.7 (sleipnir) - no triple check necessary.
* [svn-r5995] Purpose:Quincey Koziol2002-10-1411-298/+470
| | | | | | | | | | | | | | | Code cleanup/Bug Fix Description: Re-do the ID->name code again, taking into account many more weird and wonderful special cases stumbled across during the last set of test writing. Platforms tested: FreeBSD 4.6 (sleipnir) w and w/o parallel Linux 2.2.x (eirene) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel
* [svn-r5993] Purpose:Quincey Koziol2002-10-141-4/+7
| | | | | | | | | | | | | | New feature. Description: Add H5P_DEFAULT_HASH_SIZE macro for users to use as the default size of hash tables for H5Pcreate_class. Platforms tested: FreeBSD 4.6 (sleipnir) w and w/o parallel Linux 2.2.x (eirene) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel
* [svn-r5992] Purpose:Quincey Koziol2002-10-142-24/+13
| | | | | | | | | | | | | | | | | Bug fix Description: Generic property classes where incorrectly reference counting their users, in certain cases, causing a memory leak. Solution: Cleanup reference counting code & unify in H5P_access_class() Platforms tested: FreeBSD 4.6 (sleipnir) w and w/o parallel Linux 2.2.x (eirene) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel
* [svn-r5988] Purpose:Quincey Koziol2002-10-141-4/+2
| | | | | | | | | | | | | Code cleanup Description: Changed a HRETURN_ERROR to HGOTO_ERROR Platforms tested: FreeBSD 4.6 (sleipnir) w and w/o parallel Linux 2.2.x (eirene) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel
* [svn-r5987] Purpose:Quincey Koziol2002-10-144-3/+5
| | | | | | | | | | | | | Code cleanup Description: Clean up compile warnings. Platforms tested: FreeBSD 4.6 (sleipnir) w and w/o parallel Linux 2.2.x (eirene) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel
* [svn-r5986] Purpose:Quincey Koziol2002-10-141-0/+6
| | | | | | | | | | | | | | | | | Code cleanup Description: Shift further toward removing the HRETURN* macros, in favor of the HGOTO* macros for error reporting. This change disables them in the header file and is the last change before removing them entirely after the 1.6 release. Platforms tested: FreeBSD 4.6 (sleipnir) w and w/o parallel Linux 2.2.x (eirene) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/FORTRAN & parallel
* [svn-r5983] Purpose:Quincey Koziol2002-10-141-71/+71
| | | | More fixups to the Dependencies files...
* [svn-r5982] Purpose:Quincey Koziol2002-10-141-1/+1
| | | | Update to correctly build H5Tinit.c from H5detect
* [svn-r5981] Purpose:Quincey Koziol2002-10-143-281/+556
| | | | Regenerate Dependencies files.
* [svn-r5979] Snapshot version 1.5 release 38HDF Admin2002-10-121-2/+2
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* [svn-r5968] Purpose:Quincey Koziol2002-10-092-2/+4
| | | | | | | | | Code cleanup Description: Change new H5P_get_class_path and H5P_open_class_path functions to be non- static and put prototypes in H5Pprivate.h Platforms tested: FreeBSD 4.6 (sleipnir) (no triple-check necessary)
* [svn-r5964] Purpose:Quincey Koziol2002-10-083-36/+160
| | | | | | | | | | | | | | | Internal feature. Description: To complement the "get the class's path" functionality, there needs to be a way to open a generic property class with a path. Solution: Implement the "open a class by path" functionality. Also, add internal testing routines. Platforms tested: FreeBSD 4.6 (sleipnir) (too small for triple testing)
* [svn-r5963] Purpose:Quincey Koziol2002-10-083-7/+119
| | | | | | | | | | | | | | | | | | | | New internal feature. Description: Need some way to determine the "full path" for a generic property class, i.e. where is this class in the class hierarchy, in relation to its parent class, etc. Solution: Added an internal function "H5P_get_class_path" and a testing function "H5Pget_class_path_test" that builds the full path of a generic property class back to the top of its class hierarchy. This implementation uses '/' characters to delimit the components of the class path, but no special cases are currently supported for having a '/' character as part of the actual class name. Should this become an issue, code to support (and test) it will need to be added. Platforms tested: FreeBSD 4.6 (sleipnir) (not major enough to justify triple-test)
* [svn-r5962] Purpose:Quincey Koziol2002-10-071-13/+73
| | | | | | | | | | | | Bug fix Description: H5Pequal's algorithm for comparing property lists wasn't allowing property lists that are equal but had the properties inserted in a different order in the list's hash table. Solution: Re-did the algorithm a bit to compare the properties better. Platforms tested: FreeBSD 4.6 (sleipnir) (minor enough to not need triple testing)
* [svn-r5961] Purpose:Quincey Koziol2002-10-072-0/+2
| | | | | | | | New error code Description: Add a new error code for the generic properties to use. Platforms tested: FreeBSD 4.6 (sleipnir) (too small to need triple testing)
* [svn-r5959] Raymond Lu2002-10-044-92/+161
| | | | | | | Purpose: Performance improvement for compact dataset. Platforms tested: Linux 2.2(eirene), Solaris 2.7(arabica), IRIX64 6.5(modi4)
* [svn-r5955] Raymond Lu2002-10-011-11/+5
| | | | | | | | | Purpose: a bug fix Description: modify the condition check for the file close degree. Platforms tested: Linux 2.2(eirene), Solaris 2.7(arabica), IRIX64 6.5(modi4)
* [svn-r5954] Raymond Lu2002-09-302-3/+9
| | | | | | | | | | | Purpose: a bug fix Description: When a file is opened for a second time, file close degree is supposed to be either the same as the first open, or default as the first open is also default. Platforms tested: Linux 2.2(eirene), Solaris 2.7(arabica), IRIX64 6.5(modi4)
* [svn-r5951] Raymond Lu2002-09-3021-6/+848
| | | | | | | | | | | Purpose: New API functions Description: Added API functions to return pointer to low-level file handle (H5Fget_vfd_handle and H5FDget_vfd_handle) and related property list setting functions(H5Pset_family_offset and H5Pset_multi_type). Platforms tested: Linux 2.2(eirene), Solaris 2.7(arabica), IRIX64 6.5(modi4)
* [svn-r5949] Snapshot version 1.5 release 37HDF Admin2002-09-281-2/+2
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* [svn-r5947] Purpose:Quincey Koziol2002-09-2514-1203/+823
| | | | | | | | | | | | | | | | Code cleanup Description: Clean up ID->name code: - Reformat to better match library coding standard - Changed several algorithms to be more efficient - Integrated into library more smoothly Platforms tested: eirene w/FORTRAN & C++ arabica w/FORTRAN modi4 w/FORTRAN & parallel sleipnir
* [svn-r5936] Pedro Vicente Nunes2002-09-212-7/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix [ i s this a bug fix? feature? ...] Description: the copy of a symbol table entry was done with a shallow copy, in H5T_copy this was causing an exception on the free call of the ID to name buffer replaced a shallow copy of a symbo l a edescribe the bug, or describe the new feature, etc] Solution: [details about the changes, algorithm, etc...] [Please as detail as you can since your own explanation is better than others guessing it from the code.] Platforms tested: windows 2000 solaris with cpp, fortran irix64, with fortran, parallel i r [machines you have tested the changed version. This is absolute important. Test it out on at least two or three different platforms such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and 64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
* [svn-r5931] MuQun Yang2002-09-2051-1045/+1045
| | | | | | | | | | | | Purpose: __DLL__ is a keyword in some platforms and __DLL__ is also defined as a macro for windows DLL applications. That causes problems. Description: Solution: Use H5_DLL*** to replace __DLL***__ at all header files. Change the macro defination at H5api_adpt.h. Platforms tested: linux2.2.18smp, irix64, solaris 2.7 and windows 2000
* [svn-r5929] Pedro Vicente Nunes2002-09-187-66/+280
| | | | | | | | | | | | | | Purpose: bug fix Description: memory leak regarding the ID to name buffer Solution: added a new function H5G_free_ent_name that is called on several places of the library Platforms tested: windows 2000 linux, with cpp solaris, with fortran, cpp irix64, with parallel, fortran
* [svn-r5927] Snapshot version 1.5 release 36HDF Admin2002-09-141-2/+2
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* [svn-r5926] Purpose:Quincey Koziol2002-09-137-66/+68
| | | | | | | | | | | | | API name change Description: Change all "space time" references to "alloc time", including API functions and macro definitions, etc. Platforms tested: FreeBSD 4.6 (sleipnir) w/C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/parallel & FORTRAN
* [svn-r5925] Purpose:Quincey Koziol2002-09-132-4/+60
| | | | | | | | | | | | Code cleanup Description: Eliminate memory leak of compact storage raw data buffer found by purify. Platforms tested: FreeBSD 4.6 (sleipnir) w/C++ Solaris 2.7 (arabica) w/C++ IRIX64 6.5 (modi4) w/parallel & FORTRAN
* [svn-r5924] Purpose:Quincey Koziol2002-09-131-2/+2
| | | | | | | | | | | | | Code cleanup Description: Switch order of test on array bounds to avoid reading data outside of array Located by purify. Platforms tested: FreeBSD 4.6 (sleipnir) w/C++ Solaris 2.7 (arabica) w/C++ IRIX64 6.5 (modi4) w/parallel & fortran
* [svn-r5921] Purpose:Quincey Koziol2002-09-112-7/+7
| | | | | | | | | | | | | | | | | Code cleanup Description: Two of the parameters to H5S_select_hyperslab are defined as "const hsize_t foo[]", and then "foo" is assigned another value, which is technically against the C standard and is now causing problems for a user with a more strict compiler. Solution: Changed "const hsize_t foo[]" to "const hsize_t *foo". Platforms tested: FreeBSD 4.6 (sleipnir) - not a significant enough change to worry about multi-platform testing.
* [svn-r5918] Purpose:Quincey Koziol2002-09-111-1/+1
| | | | | | | | | | | | Bug fix. Description/Solution: Fix bug in log file driver where the size of the buffer for recording the log information was being set incorrectly. Platforms tested: FreeBSD 4.6 (sleipnir) - no additional testing on other machines neceessary, due to scope of fix.
* [svn-r5912] Snapshot version 1.5 release 35HDF Admin2002-09-071-2/+2
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* [svn-r5911] Pedro Vicente Nunes2002-09-043-8/+52
| | | | | | | | | | | | | Purpose: bug fix in 'ID to name' function Description: the function replace_name was only checking for immutable datatypes Solution: added a new function H5T_is_named, that checks for named datatypes Platforms tested: windows 2000, linux, solaris with Fortran
* [svn-r5910] Purpose:Bill Wendling2002-09-031-5/+5
| | | | | | | | | | Bug Fix Description: Some macros had "NULL" instead of "FAIL" as the return value. Solution: Change from NULL to FAIL. Platforms tested: Eirene (C++), Arabica (Fortran), Modi4 (pp and Fortran).
* [svn-r5908] Snapshot version 1.5 release 34HDF Admin2002-08-311-2/+2
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* [svn-r5907] Pedro Vicente Nunes2002-08-301-5/+34
| | | | | | | | | | | | | | | | | | | | | | | | Purpose: bug turnaround in test_hdf5_fortran on a h5fmount_c call Description: the H5I_nmembers(H5I_GROUP) call that is made inside h5fmount_c -> H5G_replace_name -> H5I_nmembers(H5I_GROUP) is not detecteting correctly that the entry belongs to the group list therefore a call is made to H5I_search(H5I_DATATYPE) (there are always non-named datatypes) and H5G_replace_ent is called with a search for the datatype group ent = H5T_entof((H5T_t*)obj_ptr); which returns a NULL ent a tweak for this is to add if( !ent) goto done; Platforms tested: windows 2000, Linux, Solaris with fortran
* [svn-r5904] Pedro Vicente Nunes2002-08-2812-67/+1187
| | | | | | | | | | | | | | | | | | | Purpose: Added 'ID to name' support Description: There is a new API function H5Iget_name Most of the changes are on H5G.c , regarding the symbol table entry struct H5G_entry_t which has 2 new fields 'name' and 'old_name' A new private function was introduced H5G_ent_copy, that does a deep copy between 2 symbol table entries The test file is getname.c Platforms tested: windows 2000, Linux, Solaris
* [svn-r5900] Purpose:Quincey Koziol2002-08-271-11/+115
| | | | | | | | | | | Code cleanup/New Feature Description: Improve the space allocation in the file by re-using freed space more effectively. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel
* [svn-r5897] Purpose:Bill Wendling2002-08-271-35/+52
| | | | | | Cleaned up the documentation Description: There were some small errors in the documentation in the source file.
* [svn-r5894] Purpose:Quincey Koziol2002-08-2720-410/+857
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix/Code cleanup/New Feature Description: Correct problems with writing fill-values to external storage and allocate the data storage at the correct times. Also, mostly straighten out the strange code which allocates and fills raw data storage for datasets. Things are still a bit odd in that the fill-values for chunked datasets are written when the space is allocated, instead of in a separate routine, but there are two reasons for this: it's inefficient (especially in parallel) to iterate through all the chunks twice, and (more importantly) the space needed to store compressed chunks isn't known until we've got a buffer of compressed fill-values ready to write to the chunk. Additionally, add in the H5D_SPACE_ALLOC_INCR and H5D_SPACE_ALLOC_DEFAULT setting for the "space time", which incorporate the previous behavior of the space allocation for chunked datasets. The default settings for the different types of dataset storage are now as follows: Contiguous - Late Chunked - Incremental Compact - Early This checkin also incorporates a change to the behavior of external data storage in two ways - fill-values are _never_ written to external storage (under the assumption that writing fill-values is triggered by allocating space in an HDF5 file, and since space is not allocated in the file, the fill-values should not be written) and external data files are now created if they don't exist when data is written to them. The fill-value will probably need to be revisited at some time in the future, this just seemed like the safer course currently. I think I cleaned up some compiler errors also, before getting bogged down in the fixes for the space allocation and fill-values. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel. Will be testing on IRIX64 6.5 (modi4) in serial & parallel shortly.
* [svn-r5886] Purpose:Quincey Koziol2002-08-232-0/+28
| | | | | | | | | | | | | | Bug fix Description: Correctly apply filters (like compression) to fill values in chunks that are pre-allocated. This is OK in parallel also, since all the chunks are identical at this point and any chunk may be written by any process. Platforms tested: FreeBSD 4.6 (sleipnir) w/parallel
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