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* [svn-r29776] Description:Quincey Koziol2016-04-246-3/+62
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29775] Description:Quincey Koziol2016-04-241-0/+4
| | | | | | | | Another change for 'none' file pointers. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29770] Description:Quincey Koziol2016-04-238-9/+553
| | | | | | | | Bring 'none' chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29742] Description:Quincey Koziol2016-04-191-0/+1
| | | | | | | Add missing source file for single chunk index. Tested on: Windows (via daily testing
* [svn-r29738] Description:Quincey Koziol2016-04-199-19/+650
| | | | | | | | Bring "single" chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29722] Description:Quincey Koziol2016-04-171-0/+17
| | | | | | | | Bring over more dataset tests from the revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29717] Description:Quincey Koziol2016-04-163-6/+12
| | | | | | | | | | Correct chunk index computation for earrays and farrays, particularly when copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size) that require iterating over all chunks. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29715] Description:Quincey Koziol2016-04-161-11/+15
| | | | | | | | | Clean up coding to increment/decrement underlying FAPL for multi/split VFDs, to avoid copying property lists as much. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29712] Description:Quincey Koziol2016-04-162-2/+2
| | | | | | | | Minor code cleanups to address typos & warnings. Tested on: MaOSX/64 10.11.4 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r29668] Added H5Dfarray.c to CMake.Dana Robinson2016-04-081-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 CMake serial
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-0712-22/+1782
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
* [svn-r29655] Added H5D_CHUNK_BTREE to the deprecated section of H5Dpublic.h.Dana Robinson2016-04-071-0/+1
| | | | Tested on: 64-bit Ubuntu 15.10 (build only, not used in existing code)
* [svn-r29644] Description:Quincey Koziol2016-04-061-1/+1
| | | | | | | | Finish correcting initializer for chunked layouts. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (to minor to require h5committest)
* [svn-r29640] Description:Quincey Koziol2016-04-051-1/+1
| | | | | | | | Add missing inializer from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (Too minor to require h5committest)
* [svn-r29638] Added new chunk index types to trace code.Dana Robinson2016-04-051-0/+34
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29635] Description:Quincey Koziol2016-04-0517-18/+3749
| | | | | | | | | Bring support for earray and v2 B-trees from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29626] Description:Quincey Koziol2016-04-043-17/+23
| | | | | | | | Revise method of invoking object flush callback. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29625] Description:Quincey Koziol2016-04-042-115/+0
| | | | | | | | Removed unused routines Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29620] Merge of r29619 from revise_chunks. Minor H5Fpublic.h comment ↵Dana Robinson2016-04-041-3/+0
| | | | | | update. Tested on: 64-bit Ubuntu 15.10 (build only, no code changes)
* [svn-r29614] Description:Quincey Koziol2016-04-034-38/+71
| | | | | | | | | Bring updated code for setting chunk size information from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29612] Description:Quincey Koziol2016-04-0317-112/+114
| | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29607] Description:Quincey Koziol2016-04-029-94/+875
| | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
* [svn-r29552] Normalization with revise_chunks in preparation for big merge.Dana Robinson2016-03-241-2/+5
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29549] Minor normalization w/ revise_chunks in preparation for big merge.Dana Robinson2016-03-243-8/+8
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r29548] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-2426-148/+153
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r29500] Made CMake header generation a normal (not advanced) optionDana Robinson2016-03-221-1/+0
| | | | | | | since users will need to set this if they check out source. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 CMake serial (CMake 3.2.2)
* [svn-r29499] Minor prettification of Java configure code and libraryDana Robinson2016-03-221-2/+3
| | | | | | | settings file. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/Java
* [svn-r29482] Switched a few Visual Studio #ifdefs to Win32Dana Robinson2016-03-212-4/+4
| | | | Tested on 64-bit Win10 w/ VS 2015 Pro
* [svn-r29474] Removed prototype enclosed in #ifdef OUT in H5Oprivate.h.Dana Robinson2016-03-181-5/+0
| | | | | | | This is unused and causes problems for a user who has OUT #defined. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29440] Minor typo fix.Dana Robinson2016-03-161-1/+1
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* [svn-r29421] Fix for HDFFV-9516.Dana Robinson2016-03-151-0/+12
| | | | | | | | Corrects a problem where H5Dget_access_plist() returns a dapl that does not contain all dapl fields. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
* [svn-r29395] Corrected parentheses in floating-point compare macros.Dana Robinson2016-03-122-9/+10
| | | | | | | Corrected H5_EB and H5_PB macros. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, & C++
* [svn-r29372] minor error reporting fix.Mohamad Chaarawi2016-03-091-2/+2
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* [svn-r29350] Revert h5check_version change to check LT_VERS_XXXX numbers ↵Larry Knox2016-03-082-142/+3
| | | | | | | | | | | | | | | | | rather than HDF5 library version numbers. Svn revisions reverted: 29341, 29326 Branch features/h5check_version was created for further development. Files changed test/tcheck_version.c test/testcheck_version.sh.in src/H5public.h src/H5.c config/lt_vers.am bin/h5vers Tested with h5committest.new
* [svn-r29326] HDFFV-9536: Changed H5check_version() to use libtool shared ↵Albert Cheng2016-03-072-3/+142
| | | | | | | | | | | | | | | | | | | | | | | | library version numbers instead of the library version numbers. bin/h5vers: Changed to copy the shared lib version from lt_vers.am to H5public.h (Thanks to Larry who made the changes.) config/lt_vers.am: cosmetic change, nothing material. src/H5public.h: Changed by bin/h5vers. src/H5.c: Changed H5check_version() to use shared library version for compatibility checking. test/tcheck_version.c: test/testcheck_version.sh.in: Changed to use shared library version numbers instead of the HDF5 library version numbers for testing. Tested: tested in Jam (C only), platypus and osx1010dev (enable fortran and C++).
* [svn-r29279] Tidying of H5C_load_entry() before complicated merge.Dana Robinson2016-03-051-130/+64
| | | | | No significant code changes. Smoke checked on 64-bit Windows 10 with VS 2015 Pro.
* [svn-r29266] Header generation default should be OFF.Allen Byrne2016-03-041-1/+1
| | | | For Trunk - cacheinit.cmake should enable it ON
* [svn-r29245] use HDONE_ERROR instead of HGOTO after done.Mohamad Chaarawi2016-03-011-2/+2
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* [svn-r29226] HDFFV-9552: merge in java code.Allen Byrne2016-02-292-1/+4
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* [svn-r29202] Fix for unknown message HDFFV-9697.Vailin Choi2016-02-249-27/+81
| | | | Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
* [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-2214-136/+763
| | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
* [svn-r29150] fix for Jira issue 9670 - HDF5 segfaults on corrupted file.Mohamad Chaarawi2016-02-1812-144/+223
| | | | | | Change compare callback in Btree2 class to correctly account for errors. tested on bb-8.
* [svn-r29096] fix bug in internal dxpls generated exposed by production and ↵Mohamad Chaarawi2016-02-121-6/+8
| | | | parallel.
* [svn-r29094] Removed the v-1 B-tree package from the list of packages thatDana Robinson2016-02-121-2/+2
| | | | | | | | | | | | can be configured to generate extra debugging output in both the autotools and CMake. This can still be set by defining H5B_DEBUG manually or by using a custom string in configure. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial CMake serial
* [svn-r29088] - Add a test for retrieving the property values for the new ↵Mohamad Chaarawi2016-02-113-4/+15
| | | | | | | | | coll md functions. - ifdef some code that don't need to be built in parallel - more minor enhancements tested on bb-8 with parallel and serial
* [svn-r29086] missed renaming the GET collective metadata read requirement.Mohamad Chaarawi2016-02-112-4/+4
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* [svn-r29084] Revert of:Dana Robinson2016-02-1113-757/+127
| | | | | | | | | | | | | | | r29069 and 72 (gheap cleanup) r29041 and 43 (HDFFV-8740 external storage) These cause problems in the daily tests. They will be re-introduced when their respective problems have been addressed. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (check-vfd) w/ Fortran and C++ autotools parallel w/ Fortran CMake serial
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-1052-518/+1914
|\ | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29079] rename the coll read requirement function.Mohamad Chaarawi2016-02-102-4/+4
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| * [svn-r29077] Description:Quincey Koziol2016-02-1017-511/+385
| | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
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