| Commit message (Collapse) | Author | Age | Files | Lines |
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Update
Description:
The F_open and F_flush functions had a lot of cruft in them. The
F_flush was being used as a way to allocate the superblock. The
F_open had a bunch of code in there to read and serialize the
superblock.
Solution:
Moved these out into their own functions.
Platforms tested:
Modi4 (parallel, Fortran)
Copper (parallel, Fortran)
Verbena (Fortran, C++)
Sol (Fortran)
Misc. update:
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Code cleanup, etc.
Description:
Generalize Ray's datatype fixes to handle packing compound datatypes which
are the base type of an array or variable-length type, etc.
Also track "packedness" of a compound datatype from it's creation, instead
of only setting the 'packed' flag after the datatype was explicitly packed.
Updated docs to reflect that a compound datatype is allowed to grow (but
not shrink).
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Code cleanup
Description:
Patch up a few places where the metadata cache could ask for a read lock
instead of a write lock and other minor code cleanups.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too minor to need h5committest
Misc. update:
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Description: H5Tpack fails if called twice or datatype is locked. Compound
datatype wasn't expandable.
Platforms tested: h5committest
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Update
Description:
Added extra parameter to the H5AC_protect() function that indicates
if the cache being asked for is going to be written to or just read
from. Those AC_protect calls that were H5AC_find calls are now
read-only. The rest are writes.
Platforms tested:
Linux (h5committest not needed due to size and small impact)
Misc. update:
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Bug fix.
Description:
Correct bug where a file opened twice, once with read-write permission
and once with read-only permission would cause closing the file with the
read-only file ID to fail because it was trying to flush information out
of the file.
Solution:
Check the permissions on file IDs that are being closed and only flush
when the particular file ID was opened with write permission.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
Misc. update:
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Removal of H5AC_find()
Description:
The H5AC_find() function is mostly redundant and with the new
Flexible Parallel HDF5 stuff, we need to do locking on metadata
returned from the H5AC_find() anyway. So, all of the locking stuff
will be placed in the H5AC_{un}protect() functions. The H5AC_find()
is no longer needed.
Solution:
Replaced all H5AC_finds with H5AC_protects and H5AC_unprotects.
Platforms tested:
Linux (Fortran & C++)
Solaris (Fortran)
Irix (Parallel & Fortran)
Misc. update:
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Checkpoint file format spec.
Description:
Clarifications and cleanups related to file format review.
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Code cleanup/bug fix
Description:
Move metadata cache calls around a bit so they protect the usage of the
metadata better.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Fix, of a sort
Description:
Some of the code would get an object from the cache via the
H5AC_find() function and then modify the returned object. This
behavior is incorrect as the pointer returned via the H5AC_find()
function is supposed to be read only.
Solution:
Changed the H5AC_finds to H5AC_protect() instead and added the
appropriate H5AC_unprotect() function.
Platforms tested:
(simulated h5committest by hand since it doesn't work for me)
Linux (Fortran, C++)
Solaris (Fortran)
AIX (Fortran, C++)
SGI (Parallel, Fortran)
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Code cleanup
Description:
More de-linting
Platforms tested:
FreeBSD 4.9 (sleipnir)
Too small to need h5committest
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Bug fix
Description:
The VFL driver ID in a file's access proprty list wasn't being reference
counted correctly, causing the VFL driver to get prematurely closed after
several calls to "H5Pget_access_plist->H5Pclose".
Solution:
Increment VFL driver ID reference count when copy of file's access property
list is made in H5Pget_access_plist()
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Code cleanup
Description:
More de-linting...
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Code cleanup
Description:
More de-linting...
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Bug Fix and code cleanup
Description:
Correct error in H5T_detect_class that was causing nested compound datatypes
with to not detect the datatype class of fields correctly, which caused errors
with fill-values, variable-length datatypes and chunks later on.
Return the rank of the array datatype from H5Tget_array_dims(), like
H5Sget_dims().
Lots of cleanups to datatype code, to make the handling of arrays, compound
types, variable-length strings and sequences and enumerated types more
consistent and robust.
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Code cleanup
Description:
De-linted more code.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Code cleanup
Description:
De-linted more code
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to need h5committest
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Bug fix
Description:
When datasets are deleted from a file, they are removed from the sieve
buffer, but instead of invalidating only the part of the sieve buffer affected,
the sieve buffer code would throw away the entire sieve buffer, potentially
including other raw data in the buffer that hadn't been written to disk yet.
Solution:
Improve the sieve buffer clearing code to handle partial invalidations.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Code cleanup
Description:
De-linted more code.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to need h5committest
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Code cleanup
Description:
Clean up some of the code for writing out dataspace and datatype
information.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too small to need h5committest
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Bug fix
Description:
H5Gget_objname_by_idx should allow NULL for the 'name' parameter, to allow
for querying for the name's length.
Solution:
Allow NULL for the 'name' parameter, the internal functions were already
ready to handle that case.
Clean up RM information about H5Gget_objname_by_idx and
H5Gget_objtype_by_idx also.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Code cleanup
Description:
De-linted more modules
Platforms tested:
FreeBSD 4.8 (sleipnir) w/ & w/o stream enabled
too minor to require h5committest
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Bug fix.
Description:
Added MPE color definintions for the Stream-vfd API.
Platforms tested:
Tested in Copper since MPE only works there.
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Bug fix
Description:
Correct bug creating native versions of "complex" compound datatypes
on certain architectures (Sparc-Solaris) which require stricter alignment.
Also, correct bug where metadata (padding type, etc.) for strings was
incorrectly dropped.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Bug fix
Description:
Correct problem with mis-aligned string pointers on certain architectures
(i.e. on modi4) causing a core dump. The string pointers can be mis-aligned
due to being part of a compound datatype and how our compound type conversion
routines work.
Solution:
Allocate string with temporary variable and memcpy() the pointer to the
new string into the type conversion buffer, instead of dereferencing the type
conversion buffer directly.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Code cleanup
Description:
De-linted more code
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to require h5committest
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Bug fix
Description:
MPE color definitions were missing for new API.
Solution:
Updated it.
Platforms tested:
Tested by hand in Copper since that is the only place that
MPE option works currently.
Misc. update:
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Code cleanup
Description:
De-linted more code
Platforms tested:
FreeBSD 4.8 (sleipnir) w/parallel
too minor to require h5committest
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Bug fix
Description:
H5Gget_num_objs, H5Gget_objname_by_idx and H5Gget_objtype_by_idx were
only accepting a group ID, instead of a location ID, as our documentation for
them stated.
Solution:
Allow them to accept a location ID.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Code cleanup
Description:
More de-linting
Platforms tested:
FreeBSD 4.8 (sleipnir)
too small to need h5committest
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Code cleanup & bug fix
Description:
More de-linting...
Also correct a bug that lint exposed which was incrementing the incorrect
driver ID of a file driver and also no saving the correct driver ID for the
newly opened file.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor for h5committest
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Code cleanup
Description:
More linting...
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to need h5committest
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Bug fix
Description:
I/O on chunked datasets with a scalar dataspace for the memory dataspace
was not working correctly.
Solution:
Translate the scalar dataspace into a n-dimensional (where n is the number
of dimensions of the file's dataspace) dataspace of dimensions 1x1x1...
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest (modulo modi4 which is not working correctly)
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Code cleanup
Description:
Various cleanups resulting from running lint tool over H5F.c source module
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to require h5committest
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New error
Description:
Added H5E_CANTCLOSEOBJ error
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to need h5committest
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Code cleanup
Description:
Changed version #'s returned from H5Pget_version from 'int *' to
'unsigned *' since we are never going to be using negative version #'s... :-)
Platforms tested:
FreeBSD 4.8 (sleipnir)
too small to need h5committest
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Bug fix
Description:
Linking and unlinking objects with multiple internal and/or trailing '/'s
was not handled well in the library.
Solution:
"Normalize" strings by removing trailing '/'s and collapsing multiple
internal '/'s down into just one '/' before operating on the name.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committested
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Clean up Pablo masks
Description:
H5E.c - Moved Pablo mask definition above include files, so it affects
inline functions properly.
H5FDstream.c - Added Pablo mask definition to address daily build failures.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor for h5committest
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Added comment.
Description:
Call to MPI_Barrier should be unneccessary.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor for h5committest
Misc. update:
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Code cleanup
Description:
Cleanup H5Pclose code and also switch a few internal users of H5Pclose
to use H5I_dec_ref instead.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too small for h5committest
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Added some comments, etc.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too trivial for h5committest
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Revert erroneous comment
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Code cleanup & commentary
Description:
Add comments to the recent FPHDF5 additions to this file to describe why
the changes shouldn't be in this file and attempt to find the proper home for
them.
Platforms tested:
FreeBSD 4.8 (sleipnir)
just comments mostly, no need to run h5committest
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Bug fix
Description:
The metadata cache 'destroy' callback routines need the file handle in
order for certain callback routines (currently just the H5HG one) to perform
extra cleanups. The recent change to call the 'destroy' callback from the
'clear' callback omitted this parameter.
Solution:
Add the file handle to the metadata cache 'clear' callbacks.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too small to need h5committest
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Bug Fix
Description:
With the new datatypes for OIDs, I didn't write the comparison
function correctly.
Solution:
Changed it from:
return oid1 == oid2
to
return oid1 - oid2
Platforms tested:
Linux (FPHDF5 specific)
Misc. update:
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Update
Description:
Added an extra flag to the clear functions that triggers a "destroy"
of the object being cleared if necessary. This is a fix for the
FPHDF5 stuff which had an object sticking around after it was
cleared. (In FPHDF5, some processes are in charge of destroying the
object, but all processes might actually allocate the object.)
Platforms tested:
AIX (Copper: Fortran & C++)
Linux (Verbena: Fortran & C++)
IRIX (Modi4: Parallel & Fortran)
(Sol is down)
Misc. update:
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Update doc
Description:
Update list of files that have been linted.
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