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* Remove extra parensAllen Byrne2020-08-131-1/+1
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* HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-11/+11
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* Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-08-021-1/+18
| | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly)
* Merge pull request #2708 in HDFFV/hdf5 from ↵Vailin Choi2020-07-231-0/+4
|\ | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/18_HDFFV-11080-heap-use-after-free-by-the-call to hdf5_1_8 * commit '2d7a23887a6c5121b4dac858a50792a18087c5bf': Incorporate pull request #2693 from develop for the fix to HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads (3) Update MANIFEST (4) Add new test to Cmake
| * Incorporate pull request #2693 from develop for the fix to HDFFV-11080:vchoi2020-07-221-0/+4
| | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads (3) Update MANIFEST (4) Add new test to Cmake
* | Merge from 1.10-1.12-dev - LT parse needs updateAllen Byrne2020-07-202-8/+44
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* Snapshot 1.8.22-snap9. Update version to 1.8.22-snap10.hdftest2020-07-131-2/+2
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* Fix HDFFV-10591Binh-Minh Ribler2020-07-061-10/+18
| | | | | | | | | | | Description: h52gif produced a segfault when a buffer overflow occurred because the data size was corrupted and became very large. This commit added a check on the data size against the buffer size to prevent the segfault. It also added error reporting to h52gif to display an error message instead of silently exiting when the failure occurred. Platforms tested: Linux/64 (jelly)
* Update configure and Makefile.ins after bin/reconfigure.Larry Knox2020-06-221-1/+2
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* Squashed commit of the following:Larry Knox2020-06-221-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit 45b0cbc71929930a874e1c09e0770aa64d0ae697 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Apr 23 13:14:56 2020 -0500 Add C++ warnings treated as error for autotools builds. commit 6debcddcc766601799d5bd661bd60946f951a07e Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 16:50:03 2020 -0500 Remove tests for develop branch from testh5cc.sh.in. Add @H5_ECXXFLAGS@ to AM_CXXFLAGS. commit fed497e7f207313b2a133d3b68c942b7d7104b90 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 12 15:06:39 2020 -0500 Merge pull request #2646 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '998c6470d78e14228695419c3b514c35ecf3d69e': Remove unnecessary version conditions for Clang compilers. commit 92e52ce5c211bd1d3991a3b8bb67287ac7b652aa Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 18:53:45 2020 -0500 Merge pull request #2639 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'a33667faf226f5d8c9633bf537893e8fce1bf1f6': Add c++ to --enable-sanitize-checks option. commit 2e802534fb997b81fa98fdd1c7d97d4310898e0d Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 15:18:36 2020 -0500 Merge pull request #2633 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '20eab963899841c9a003baebead8e3bc07d9e127': Remove duplicate entries in MANIFEST. Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers. Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang. commit 96ef60a58a23847a7da89a891f2415055ec2ab60 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 16:24:49 2020 -0500 Merge pull request #2631 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'b942a4d8a3e27317cac50ce37ff5302d477664d8': Clean up code to get clang version in config/linux-gnulibc1 commit 8a7c687da568e8b50b38fa53da1ca63759be6ec4 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 11:42:37 2020 -0500 Merge pull request #2623 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'c7626f79fdee4eee13925e240ef41e61f3367eab': Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h. Add files for adding warning flags for clang compilers in autotools configure. commit db3ef7ff3c1ed79167cecef831501411cff8291f Merge: 5a0f8d7 f9f1310 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 14:46:22 2020 -0500 Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_12 commit 5a0f8d7940ae57b445f545a0abd7e303ce6924ee Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 20:15:41 2020 -0500 Merge pull request #2636 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-11000-update-testh5cc.sh.in-for-version to develop * commit '5c0bd670d6e9919c463fbc05de99e2ba55b0761e': Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags. HDFFV-11000: update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop.
* Snapshot 1.8.22-snap8.hdftest2020-06-161-2/+2
| | | | Update version to 1.8.22-snap9.
* Yanked all MPI-1 callsDana Robinson2020-05-291-1/+1
| | | | Added batch scripts in bin/batch.
* Snapshot 1.8.22-snap7hdftest2020-05-141-2/+2
| | | | Update version to 1.8.22-snap8.
* Merge branch 'hdf5_1_8' of ↵Larry Knox2020-05-041-0/+2
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_8
| * Add missing headersAllen Byrne2020-05-021-0/+2
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* | Fix ifort warning flag.Larry Knox2020-05-041-0/+3
|/ | | | | | | | Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags.
* Update to use optimization flags, C++ error flags, and correctLarry Knox2020-04-302-25/+16
| | | | libhdf5.settings.in to remove unworkable changes.
* Resolve warning errors from -Werror= flags:Larry Knox2020-04-293-6/+4
| | | | | | | -Werror=bad-function-cast -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=nested-externs
* Add -Werror= flags to lists displayed in libhdf5.settings.Larry Knox2020-04-281-2/+2
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* Merge branch 'hdf5_1_8' of ↵hdftest2020-04-2616-1079/+1054
|\ | | | | | | ssh://bitbucket.hdfgroup.org:7999/~hdftest/hdf5_hft into hdf5_1_8
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2020-04-141-3/+11
| |\ | | | | | | | | | | | | * commit '32fcd8f7721ae218a86bf2438f1868c85a2c2fe9': A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. The code to fix the problem is the same as what is done in H5D__open_oid().
| | * A fix in the cleaning up code for datatype when datatype initialization via ↵vchoi2020-04-081-3/+11
| | | | | | | | | | | | | | | | | | H5D__init_type() fails. The code to fix the problem is the same as what is done in H5D__open_oid().
| * | TRILAB-192 - merge changes from developAllen Byrne2020-04-071-6/+2
| | | | | | | | | | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
| * | Restore page eject charsAllen Byrne2020-03-311-4/+4
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| * | Restore page ejects.Allen Byrne2020-03-311-10/+10
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| * | Autotools reconfigure updateAllen Byrne2020-03-316-828/+833
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| * | TRILAB-192 merging warnings changes from developAllen Byrne2020-03-319-262/+228
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* | Snapshot version 1.8 release 22 (snap6)hdftest2020-04-261-2/+2
|/ | | | Update version to 1.8.22-snap7
* Snapshot version 1.8 release 22 (snap5)hdftest2020-03-251-2/+2
| | | | Update version to 1.8.22-snap6
* Snapshot version 1.8 release 22 (snap4)hdftest2020-03-181-2/+2
| | | | Update version to 1.8-snap5
* Verify the decoded version for "all" and "none" selection.vchoi2020-03-123-4/+30
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* Merge pull request #24 in ~VCHOI/my_third_fork from hdf5_1_8 to ↵Vailin Choi2020-03-1110-827/+1207
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | bugfix/v18_seg_fault_ref_sel_compat * commit '7ae66f2cf819f9b1da0ffd4d00490eb2ea84405a': Remove unneeded files Fix comment h5dump reg ref chnages has no error file Check sizeof type to use correct ref_type Correct grep text for filter test Revert incorrect bool type Fix CMake compare commands Correct test script for errstack Remove system command from valgrind reports Fix h5ls attrreg Fix gif tool and h5dump Merge changes from other branches revert type cast
| * Merge changes from other branchesAllen Byrne2020-02-2910-827/+1207
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* | FIx issues when deserializing hyperslab/point selection with version beyond ↵Vailin Choi2020-02-214-7/+42
|/ | | | | | | the library's supported version: (1) Verify the decoded version before proceeding further with deserialization (2) Close the dataspace if errors occurred after opening the dataspace
* Fix improper S3 signing key null check (HDFFV-11015).Jacob Smith2020-02-071-2/+2
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* fix merge errorkmu2020-01-102-4/+6
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* Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-1015-28/+26
| | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
* Merge pull request #2234 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-091-0/+1
| | | | | | | to develop * commit '30ac64d83aff5e022d51a17fd6c1d72903ae4f02': add new type support
* Add bugfix from PR 2049 to hdf5_1_8Chris Hogan2019-12-062-14/+59
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* Snapshot version 1.8 release 22 (snap3)hdftest2019-12-041-2/+2
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* Correct file extensionAllen Byrne2019-11-141-1/+1
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* Ran bin/reconfigurebyrn2019-10-076-750/+814
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* Fix compile errorsAllen Byrne2019-10-042-1573/+873
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* HDFFV-10919 merge external storage repackAllen Byrne2019-10-024-677/+677
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* Add missing commaAllen Byrne2019-10-011-1/+1
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* Fix for statement declare variableAllen Byrne2019-09-302-20/+26
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* HDFFV-10903 merge S3 from devAllen Byrne2019-09-2314-713/+8901
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* Snapshot version 1.8 release 22 (snap2)hdftest2019-09-231-2/+2
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* Merged HDFFV-10893 (inappropriate MPI C++ linkage) to 1.8.Dana Robinson2019-09-181-0/+3
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* Snapshot version 1.8 release 22 (snap1)hdftest2019-09-161-2/+2
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