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* [svn-r17548] ↵Albert Cheng2009-09-291-8/+8
| | | | | | | | | | | | | | | | ------------------------------------------------------------------------ r17543 | acheng | 2009-09-28 23:43:22 -0500 (Mon, 28 Sep 2009) | 8 lines New test: (Bug ID 1656): Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version() does issue warnings and abort accordingly. Changed H5check_version() to suppress the warning message totally if $HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher the same as 1, that is to print a warning and allows the program to continue. Tests: H5committed tested plus jam serial tested.
* [svn-r17540] Snapshot version 1.8 release 3 (snap12)Larry Knox2009-09-271-2/+2
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* [svn-r17536] Purpose: Fix bug 1620Neil Fortner2009-09-251-2/+2
| | | | | | | | | Description: H5Ppublic.h listed H5Pget_filter_by_id1 and H5Pget_filter_by_id2 as returning H5Z_filter_t, when in fact they return herr_t. The header file has been corrected to indicate that they return herr_t. Tested: jam
* [svn-r17531] Purpose: Fix bug 1555Neil Fortner2009-09-251-4/+4
| | | | | | | | | | | | | Description: At several places in H5Pint.c properties were being compared using memcmp, not using the registered "cmp" callback. This could cause memory checkers to report uninitialized memory errors, and could conceivably cause runtime errors if memcmp reported false equality (for example if a value pointed to by the property changed). The code has been changed to always use the cmp callback. Tests have been added that check this in all the places that previously used memcmp. Tested: jam, linew, smirom (h5committest)
* [svn-r17501] Snapshot version 1.8 release 3 (snap11)Larry Knox2009-09-201-2/+2
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* [svn-r17500] Bug fix and improvement.Albert Cheng2009-09-191-3/+8
| | | | | | | | | | | | Description: Build failed when embedded-info is not enabled. Fixed. testlibinfo.sh output was ugly, did not prepare the case of embedded-info not enabled. Fixed. Also changed NOT to test test binary even if static-exec is enabled. Tested: jam (with and without embedded-info enabled). Did not test in other platforms since these were script changes that are platform independent.
* [svn-r17499] Purpose:Albert Cheng2009-09-183-25/+63
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Stage 2 implementation of embedded library information feature. H5.c: added code to print the embedded library information when there is a library versions mis-match occurs. This ensures the library information string is included in the executable. Also modifies the code so that the Library mismatch warning string is included only once in the executable. H5private.h: Added a global reference to the libinfo string variable to prepare for possible stage 3 implementation of a public API. test/testlibinfo.sh.in: A new test added to verify the library information is indeed included in the executables. configure.in: configure: Added entry to auto-generate test/testlibinfo.sh. H5detect.c: Modified the libhdf5settings generating code to allow it to insert the strings to a file other than stdout. This maybe needed in stage 3 implementation. MANIFEST: updated with the newly added file of testlibinfo.sh.in. Tested: h5committest passed. Also passed jam in serial mode.
* [svn-r17472] Snapshot version 1.8 release 3 (snap10)Larry Knox2009-09-131-2/+2
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* [svn-r17464] Description:Quincey Koziol2009-09-112-26/+39
| | | | | | | | | | | Bring r17463 from trunk to 1.8 branch: Add another regression test for userblock+alignment usage, and correct [another] issue with the combination. *sigh* Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17462] Description:Quincey Koziol2009-09-108-46/+90
| | | | | | | | | | Bring r17461 from trunk to 1.8 branch: Fix a few more problems when the user block is not aligned properly. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17460] Description:Quincey Koziol2009-09-083-24/+29
| | | | | | | | | | | | | | Bring r17459 from trunk to v1.8 branch: Correct bad interaction between non-zero userblocks with non-zero alignments. Also add some additional range checking and tests for invalid userblock sizes. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17453] Snapshot version 1.8 release 3 (snap9)Larry Knox2009-09-061-2/+2
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* [svn-r17439] Purpose:Mike McGreevy2009-08-312-66/+136
| | | | | | | | | | | | | | | | | | | | | | Updating autotools Description: Bring revisions 17345 and 17357 from trunk to 1.8, specifically: - Automake upgraded to 1.11 - Autoconf upgraded to 2.64 - bin/reconfigure script edited to use new versions (on jam), and run to generate new configure script and Makefile.in's. - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings (in order to comply with new autoconf standard). - bin/install-sh script replaced with new version as provided by automake. Tested: - All issues on trunk were resolved, so only tested on jam and linew. Any other outliers should be caught by daily tests.
* [svn-r17437] Snapshot version 1.8 release 3 (snap8)Larry Knox2009-08-301-2/+2
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* [svn-r17433] Description:Quincey Koziol2009-08-271-16/+6
| | | | | | | | | | Bring r17432 from trunk to 1.8 branch: Simplify dataspace cleanup code. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17431] Description:Quincey Koziol2009-08-276-266/+1
| | | | | | | | | | Bring r17429 from trunk to 1.8 branch: Remove unnecessary v2 B-tree 'retrieve' callback from v2 B-tree clients. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17415] Description:Quincey Koziol2009-08-2412-428/+322
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17408, 17411, 17412, 17413 & 17414 from trunk back to 1.8 branch: r17408: Move flush operation on mounted file hierarchy into H5Fmount module. r17411: Make H5AC_flush just flush the cache and make H5AC_dest perform the proper parallel synchronization before destroying the cache. Also, further discriminate between 'closing' and 'non-closing' actions in H5F_flush. r17412: Seperate 'flush' functionality from 'destroy' functionality at the H5F level also. r17413: Remove vestigial intermediate routine for flushing file and move it into API routine. Also, remove private, unused (now) 'H5F_FLUSH_DOWN' symbol from public header file. r17414: Flush the core VFD's buffer before closing the file, also flush the metadata accumulator before reseting it. Write the driver info message out in the superblock flush routine more directly, instead of using wrapper routine, since the wrapper routine won't work when the superblock is being shutdown. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17410] Snapshot version 1.8 release 3 (snap7)Larry Knox2009-08-231-2/+2
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* [svn-r17404] Description:Quincey Koziol2009-08-2110-63/+53
| | | | | | | | | | | | | | | | | | | | | | Bring r17402 & r17403 from trunk to 1.8 branch: r17402: Switch from using a 'flags' parameter to the flush routine(s), to just using a single 'closing' boolean parameter, since that's all we're doing with the flags anyway and this makes things more obvious. r17403: Eliminate 'closing' flag to dataset flush routine, since all cached dataset information has already been flushed when a file is closed and the datasets themselves will be closed (and the dataset caches destroyed). Skip calling more flush routines when the file is closing, in preparation for eventual separation of the 'flush' concept from the 'shutdown the cache' concept. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17401] Description:Quincey Koziol2009-08-213-43/+77
| | | | | | | | | | | | | | | Bring r17400 from trunk to 1.8 branch: Refactor H5F_flush into two routines, one which handles the recursion/ iteration necessary to handle mounted files; and one which just handles the flush operation for a single file. Also, remove H5F_FLUSH_INVALIDATE and switch all code to depend on H5F_FLUSH_CLOSING. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17399] Description:Quincey Koziol2009-08-208-113/+118
| | | | | | | | | | | | | Bring r17393 and r17398 from trunk to 1.8 branch: Bring back more changes from the file free space branch to the trunk. (17393) First set of changes to move VFD 'truncate' call out of H5F_flush and defer it until the file is closed. (17398) Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17389] Description:Quincey Koziol2009-08-201-1/+1
| | | | | | | | | | | | | | Bring r17388 from trunk to 1.8 branch: Correct error in freespace test which was relying on free space section to be valid after the library had taken ownership of it (and therefore could free it). Also correct some checking for return values of H5FS internal routines Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17387] I added a detection for the correctness of converting from ↵Raymond Lu2009-08-194-8/+22
| | | | | | | | | | unsigned long to float in the configure.in. The Pathscale compiler on Sandia's Linux machine misinterprets the values of unsigned long as negative during the conversion to float, when the first bit of unsigned long is on. Tested on jam. Need to test it on Sandia's machine.
* [svn-r17380] Description:Quincey Koziol2009-08-182-17/+39
| | | | | | | | | | | | | Bring r17376 from trunk to 1.8 branch: Make similar change to windows VFD as sec2 VFD, when converting from a family file to a single file. Tweak file sizes expected for parallel tests. Tested on: FreeBSD/32 6.3 (duty) w/debug (h5committested on trunk)
* [svn-r17375] Added Windows version of HDsleep macro needed for a test in ↵Allen Byrne2009-08-181-0/+1
| | | | | | test/tfile.c. Tested: windows
* [svn-r17374] Description:Quincey Koziol2009-08-1827-1093/+1508
| | | | | | | | | | | Bring r17365 from trunk to 1.8 branch: Final merge of changes from sblock_mdc branch back to trunk. The superblock is now managed by the metadata cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17368] Snapshot version 1.8 release 3 (snap6)Larry Knox2009-08-161-2/+2
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* [svn-r17359] Description:Quincey Koziol2009-08-146-73/+102
| | | | | | | | | | Bring r17336 from trunk to 1.8 branch: Bring more changes from the file_free_space branch into the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17354] Description:Quincey Koziol2009-08-138-19/+46
| | | | | | | | | | | | | Bring r17351 from trunk to 1.8 branch: Clean up code (to align w/future sblock_mdc branch changes), tweak tests for [slightly] easier debugging, fix memory leak when copying chunked datasets with I/O filters, fix memory leak of free space section when it was exactly the right size to use for extending an existing block in the file. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17342] Description:Quincey Koziol2009-08-126-106/+8
| | | | | | | | | Bring r17341 from trunk to 1.8 branch: Tweaks to comments, to better align with changes on sblock_mdc branch Tested on: Just eyeballed, only tweaks to comments
* [svn-r17339] Snapshot version 1.8 release 3 (snap5)Larry Knox2009-08-122-32/+32
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* [svn-r17332] Description:Quincey Koziol2009-08-114-28/+98
| | | | | | | | | | Bring r17331 from trunk to 1.8 branch: Bring back more changes from file free space branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17325] Description:Quincey Koziol2009-08-114-58/+183
| | | | | | | | | | Bring r17324 from trunk to 1.8 branch: Bring more improvements/changes back from file_free_space branch Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17320] Description:Quincey Koziol2009-08-117-109/+273
| | | | | | | | | | | Bring r17319 from trunk to 1.8 branch: Bring more superblock manipulation & aggregator changes from file free space branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17314] Description:Quincey Koziol2009-08-1036-179/+184
| | | | | | | | | | | | | | | | | | | | | | Bring r17313 from trunk to 1.8 branch: Bring back various minor code cleanups from the file free space branch Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17303] Description:Quincey Koziol2009-08-041-6/+4
| | | | | | | | | | | Bring r17302 from trunk to 1.8 branch: Correct errors on machines (like Windows) that don't have C99 named initializer support. Tested on: Mac OS X/32 10.5.7 (duty) Windows build (by Allen)
* [svn-r17286] Description:Quincey Koziol2009-07-313-14/+7
| | | | | | | | | | | Bring r17284 from trunk to 1.8 branch: Remove unneccessary dest. layout information from chunked dataset copying routine. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production h5committested on trunk
* [svn-r17282] Description:Quincey Koziol2009-07-3114-110/+122
| | | | | | | | | | | Bring r17281 from trunk to 1.8 branch: Further refactoring of the dataset layout information, to separate the storage information from the layout info. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production h5committested on trunk
* [svn-r17277] Description:Quincey Koziol2009-07-3017-561/+615
| | | | | | | | Bring r17275 and r17276 from trunk to 1.8 branch. Tested on: Mac OS X/32 10.5.7 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r17274] Description:Quincey Koziol2009-07-308-30/+25
| | | | | | | | | | | Bring r17272 from trunk to 1.8 branch: Finish pushing contiguous storage size from 'layout' into 'storage" data structure. Tested on: Mac OS X/32 10.5.7 (amazon) w/debug & production Too minor to require h5committest
* [svn-r17271] Description:Quincey Koziol2009-07-305-72/+71
| | | | | | | | | | | Bring r17269 from trunk to 1.8 branch: Refactor how serialized size of layout message is computed, slightly. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production FreeBSD/32 6.3 (duty) debug Too minor to require h5committest
* [svn-r17266] Description:Quincey Koziol2009-07-3013-27/+32
| | | | | | | | | Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r17265] Description:Quincey Koziol2009-07-294-30/+23
| | | | | | | | | | | | Bring r17264 from trunk to 1.8 branch: Refine how we store the chunk index address in the layout storage structure. Tested on: FreeBSD/32 6.3 (duty) debug Mac OS X/32 10.5.7 (amazon) debug & production Too minor to require h5committest
* [svn-r17262] Description:Quincey Koziol2009-07-298-127/+157
| | | | | | | | | | | Bring r17261 from trunk to 1.8 branch: Refactoring dataset layout information to segregate the constant items from the variable items (at least from a storage standpoint). Tested on: FreeBSD/32 6.3 (duty) (h5committest performed on trunk)
* [svn-r17244] Description:Quincey Koziol2009-07-279-327/+607
| | | | | | | | | | | Bring r17243 from trunk to 1.8 branch: Refactor how the layout message is created/written/read in the dataset's object header. Tested on: FreeBSD/32 6.3 (duty) in debug mode (change h5committested on trunk)
* [svn-r17231] Description:Quincey Koziol2009-07-237-53/+74
| | | | | | | | | Bring r17230 back from trunk to 1.8 branch: Various minor tuneups noticed in working on the revise_chunks branch. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production full testing done on trunk before bringing change back.
* [svn-r17208] Fixed a small bug in the fractal heap code involving filtered ↵Neil Fortner2009-07-211-1/+1
| | | | | | fractal heaps. Tested: jam, linew, smirom (h5committest)
* [svn-r17186] The ret_value is a (H5A_t *) but FAIL was used. This typo ↵Albert Cheng2009-07-151-1/+1
| | | | | | | | | | | | caused a warning from Linux gcc but resulted in error by AIX xlc compiler. Solution: Changed FAIL to NULL. Tested: Just compiling in the AIX system.
* [svn-r17181] Minor fix - The way that H5Tset_size checks whether the ↵Raymond Lu2009-07-141-1/+1
| | | | | | | | datatype is a string wasn't correct. I changed it to use the macro H5T_IS_STRING. Tested on jam - simple change.
* [svn-r17180] In my last round of checkin (r17176), I forgot to clean up some ↵Raymond Lu2009-07-141-5/+0
| | | | | | | | code. I'm checking in the fix now. Tested on jam - simple change.
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