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* Fixed typo in an error message. (#227)bmribler2020-12-231-1/+1
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* Update SO numbers in Hdf5 1 8 (#216)Larry Knox2020-12-211-9/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Restores maintainer mode in the autotools (#200) (#204)Larry Knox2020-12-184-777/+777
| | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Update version to 1.8.23-1.Larry Knox2020-12-171-2/+2
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* Merge branch 'hdf5_1_8' of https://github.com/HDFGroup/hdf5 into hdf5_1_8Larry Knox2020-12-171-4/+4
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| * Correct func enter/leave macros in hdfs VFD (#192)Dana Robinson2020-12-161-4/+6
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* | Full version string in H5public.h was missing '-'.Larry Knox2020-12-171-1/+1
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* | Update version to 1.8.23-0 after creating release branch for 1.8.22.Larry Knox2020-12-172-3/+5
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* Hdf5 1 8 (#169)bmribler2020-12-162-2/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | * Fixed HDFFV-10480 and HDFFV-11159 Description Checked against buffer size to prevent segfault, in case of data corruption. + HDFFV-11159 CVE-2018-14033 Buffer over-read in H5O_layout_decode + HDFFV-10480 CVE-2018-11206 Buffer over-read in H5O_fill_new[/old]_decode and A user's patch was applied to this previously, but it is redone for a more correct fix, that is the check now accounted for the previous advance of the buffer pointer. Platforms tested: Linux/64 (jelly) * Fixed typo * Fixed HDFFV-11150 Description Replaced an HDassert with a check for null pointer in H5O_dec_rc() to catch null pointer in corrupted data situation. Reversed the fix in svn-r24463 in which a check for null pointer prior to calling H5O_dec_rc() Platforms tested: Linux/64 (jelly)
* Update HDF5 1.8 copyright headers with updated copyright URL (#148)Larry Knox2020-12-04362-364/+364
| | | | | | | * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html.
* Fixed HDFFV-10480 and HDFFV-11159 (#145)bmribler2020-12-032-3/+23
| | | | | | | | | | | | | | | | | * Fixed HDFFV-10480 and HDFFV-11159 Description Checked against buffer size to prevent segfault, in case of data corruption. + HDFFV-11159 CVE-2018-14033 Buffer over-read in H5O_layout_decode + HDFFV-10480 CVE-2018-11206 Buffer over-read in H5O_fill_new[/old]_decode and A user's patch was applied to this previously, but it is redone for a more correct fix, that is the check now accounted for the previous advance of the buffer pointer. Platforms tested: Linux/64 (jelly) * Fixed typo
* Multiple changes to bring branch up-to-date (#87)Allen Byrne2020-11-205-799/+799
| | | | | Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros.
* Fix compile issues with vfd drivers.Allen Byrne2020-10-202-2/+4
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* Correct boolean value and missing defineAllen Byrne2020-10-192-24/+23
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* Revert autotools files to previous versionAllen Byrne2020-10-195-1689/+1067
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* Fix macro argumentAllen Byrne2020-10-191-4/+4
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* Comment fixesAllen Byrne2020-10-192-10/+10
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* More merges from 1.10 comments and initsAllen Byrne2020-10-1597-3406/+2882
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* Update FD sourceAllen Byrne2020-10-158-34/+8
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* Update autotools filesAllen Byrne2020-10-1529-3396/+3736
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* Merge from 1.10Allen Byrne2020-10-15272-9512/+6591
| | | | | Comments, whitespace Simple init and if block brackets. Minimal code changes limited to return value and spelling
* Snapshot 1.8.22-snap11. Update version to 1.8.22-snap12.Larry Knox2020-10-141-2/+2
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* Fix comment whitespaceAllen Byrne2020-10-051-258/+241
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* Update formatingAllen Byrne2020-10-053-4/+4
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* Source formattedAllen Byrne2020-10-01355-79280/+73657
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* Merge clang-format changes from developAllen Byrne2020-10-0123-6470/+6532
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* Snapshot 1.8.22-snap10. Update version to 1.8.22-snap11.hdftest2020-08-311-2/+2
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* Remove extra parensAllen Byrne2020-08-131-1/+1
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* HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-11/+11
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* Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-08-021-1/+18
| | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly)
* Merge pull request #2708 in HDFFV/hdf5 from ↵Vailin Choi2020-07-231-0/+4
|\ | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/18_HDFFV-11080-heap-use-after-free-by-the-call to hdf5_1_8 * commit '2d7a23887a6c5121b4dac858a50792a18087c5bf': Incorporate pull request #2693 from develop for the fix to HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads (3) Update MANIFEST (4) Add new test to Cmake
| * Incorporate pull request #2693 from develop for the fix to HDFFV-11080:vchoi2020-07-221-0/+4
| | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads (3) Update MANIFEST (4) Add new test to Cmake
* | Merge from 1.10-1.12-dev - LT parse needs updateAllen Byrne2020-07-202-8/+44
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* Snapshot 1.8.22-snap9. Update version to 1.8.22-snap10.hdftest2020-07-131-2/+2
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* Fix HDFFV-10591Binh-Minh Ribler2020-07-061-10/+18
| | | | | | | | | | | Description: h52gif produced a segfault when a buffer overflow occurred because the data size was corrupted and became very large. This commit added a check on the data size against the buffer size to prevent the segfault. It also added error reporting to h52gif to display an error message instead of silently exiting when the failure occurred. Platforms tested: Linux/64 (jelly)
* Update configure and Makefile.ins after bin/reconfigure.Larry Knox2020-06-221-1/+2
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* Squashed commit of the following:Larry Knox2020-06-221-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit 45b0cbc71929930a874e1c09e0770aa64d0ae697 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Apr 23 13:14:56 2020 -0500 Add C++ warnings treated as error for autotools builds. commit 6debcddcc766601799d5bd661bd60946f951a07e Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 16:50:03 2020 -0500 Remove tests for develop branch from testh5cc.sh.in. Add @H5_ECXXFLAGS@ to AM_CXXFLAGS. commit fed497e7f207313b2a133d3b68c942b7d7104b90 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 12 15:06:39 2020 -0500 Merge pull request #2646 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '998c6470d78e14228695419c3b514c35ecf3d69e': Remove unnecessary version conditions for Clang compilers. commit 92e52ce5c211bd1d3991a3b8bb67287ac7b652aa Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 18:53:45 2020 -0500 Merge pull request #2639 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'a33667faf226f5d8c9633bf537893e8fce1bf1f6': Add c++ to --enable-sanitize-checks option. commit 2e802534fb997b81fa98fdd1c7d97d4310898e0d Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 15:18:36 2020 -0500 Merge pull request #2633 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit '20eab963899841c9a003baebead8e3bc07d9e127': Remove duplicate entries in MANIFEST. Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers. Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang. commit 96ef60a58a23847a7da89a891f2415055ec2ab60 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 16:24:49 2020 -0500 Merge pull request #2631 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'b942a4d8a3e27317cac50ce37ff5302d477664d8': Clean up code to get clang version in config/linux-gnulibc1 commit 8a7c687da568e8b50b38fa53da1ca63759be6ec4 Author: Larry Knox <lrknox@hdfgroup.org> Date: Mon Jun 8 11:42:37 2020 -0500 Merge pull request #2623 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop * commit 'c7626f79fdee4eee13925e240ef41e61f3367eab': Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h. Add files for adding warning flags for clang compilers in autotools configure. commit db3ef7ff3c1ed79167cecef831501411cff8291f Merge: 5a0f8d7 f9f1310 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jun 19 14:46:22 2020 -0500 Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_12 commit 5a0f8d7940ae57b445f545a0abd7e303ce6924ee Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jun 10 20:15:41 2020 -0500 Merge pull request #2636 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-11000-update-testh5cc.sh.in-for-version to develop * commit '5c0bd670d6e9919c463fbc05de99e2ba55b0761e': Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags. HDFFV-11000: update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop.
* Snapshot 1.8.22-snap8.hdftest2020-06-161-2/+2
| | | | Update version to 1.8.22-snap9.
* Yanked all MPI-1 callsDana Robinson2020-05-291-1/+1
| | | | Added batch scripts in bin/batch.
* Snapshot 1.8.22-snap7hdftest2020-05-141-2/+2
| | | | Update version to 1.8.22-snap8.
* Merge branch 'hdf5_1_8' of ↵Larry Knox2020-05-041-0/+2
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_8
| * Add missing headersAllen Byrne2020-05-021-0/+2
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* | Fix ifort warning flag.Larry Knox2020-05-041-0/+3
|/ | | | | | | | Restore AC_DEFUN([PAC_PROG_FC_DEFAULT_REALisDBLE] in m4/aclocal_fc.m4. Add --enable-symbols, --enable-profiling, and --enable-optimization options to autotools configure; all configure flags for --enable-production and --disable-production should match HDF5 1.10 and 1.12 production and debug default flags.
* Update to use optimization flags, C++ error flags, and correctLarry Knox2020-04-302-25/+16
| | | | libhdf5.settings.in to remove unworkable changes.
* Resolve warning errors from -Werror= flags:Larry Knox2020-04-293-6/+4
| | | | | | | -Werror=bad-function-cast -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=nested-externs
* Add -Werror= flags to lists displayed in libhdf5.settings.Larry Knox2020-04-281-2/+2
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* Merge branch 'hdf5_1_8' of ↵hdftest2020-04-2616-1079/+1054
|\ | | | | | | ssh://bitbucket.hdfgroup.org:7999/~hdftest/hdf5_hft into hdf5_1_8
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_8)Allen Byrne2020-04-141-3/+11
| |\ | | | | | | | | | | | | * commit '32fcd8f7721ae218a86bf2438f1868c85a2c2fe9': A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. The code to fix the problem is the same as what is done in H5D__open_oid().
| | * A fix in the cleaning up code for datatype when datatype initialization via ↵vchoi2020-04-081-3/+11
| | | | | | | | | | | | | | | | | | H5D__init_type() fails. The code to fix the problem is the same as what is done in H5D__open_oid().
| * | TRILAB-192 - merge changes from developAllen Byrne2020-04-071-6/+2
| | | | | | | | | | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
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