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* [svn-r8741] *** empty log message ***Raymond Lu2004-06-242-0/+40
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* [svn-r8736] Purpose:Quincey Koziol2004-06-242-69/+27
| | | | | | | | | | | | Code cleanup Description: Some code cleanups before starting serious optimization efforts. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r8732] Purpose:Quincey Koziol2004-06-2311-22/+22
| | | | | | | | | | | | Code cleanup Description: Reduce compiler warnings on SGI IRIX Platforms tested: FreeBSD 4.10 (sleipnir) SGI IRIX6 (Cheryl's machine) Too minor to require full h5committest
* [svn-r8731] Purpose:Quincey Koziol2004-06-23108-1520/+1057
| | | | | | | | | | | | | | | Code cleanup & minor optimization Description: Re-work the way interface initialization routines are specified in the library to avoid the overhead of checking for them in routines where there is no interface initialization routine. This cleans up warnings with gcc 3.4, reduces the library binary size a bit (about 2-3%) and should speedup the library's execution slightly. Platforms tested: FreeBSD 4.10 (sleipnir) w/gcc34 h5committest
* [svn-r8725] Purpose:Quincey Koziol2004-06-232-10/+39
| | | | | | | | | | | | Refactor bug fix Description: Make bug fix for detecting the type of a soft link more general by registering an "isa" function for soft links. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r8721] Purpose: Bug fix and test.Raymond Lu2004-06-221-1/+10
| | | | | | | | | | | | | Description: Function H5Gget_objtype_by_idx failed to handle soft link object. The library returned object type by calling H5G_get_type through H5B_iterate. But H5G_get_type only deals with objects with valid header address which soft link doesn't have. Solution: In H5G_node_type, make soft link a special case by checking if the object type is H5G_CACHED_SLINK. Also added a test of soft and hard links to titerate.c Platforms tested: h5committest and RH 8(fuss).
* [svn-r8712] Fixed bugs in H5I codeJames Laird2004-06-212-1/+12
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* [svn-r8711] Fixed bugs in H5I code, updated manifest.James Laird2004-06-211-2/+1
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* [svn-r8707] Changed the way HDF5 handles hid_t's and added API functions to ↵James Laird2004-06-1815-406/+1057
| | | | allow users to register IDs and ID types at runtime.
* [svn-r8705] Purpose: Bug fix and new test.Raymond Lu2004-06-181-1/+1
| | | | | | | | | | Description: This is an enhancement after a user reported data writing failure for array datatype of compound type with variable-length type in the v1.6 branch. Solution: Added new test and ran with Purify. Fixed memory errors and leaks in H5Tconv.c. Platforms tested: h5committest
* [svn-r8702] Purpose: Bug fix.Raymond Lu2004-06-171-1/+1
| | | | | | | | | Description: After I added H5S_NULL dataspace dumper test, the output didn't match XML schema for attribute data. Solution: changed. Platforms tested: RH 8(fuss), only dumper is involved, minor change.
* [svn-r8696] Purpose:Quincey Koziol2004-06-164-19/+54
| | | | | | | | | | | | | | | | | Code optimizations Description: Eliminate memset() call in H5S_set_extent_simple(). Use malloc() instead of calloc in H5B<mumble>. Change global heap code to track heap objects that are in use in order to allocate new objects more quickly and also to avoid memset() and calloc() calls. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8694] Purpose:Quincey Koziol2004-06-151-1/+2
| | | | | | | | | | | | Code optimization Description: Avoid memcpy() when setting up new chunk coordinates Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8692] Purpose:Quincey Koziol2004-06-154-14/+18
| | | | | | | | | | | | | Code optimization Description: Avoid making copy of default vlen allocation info when default DXPL is used. Just retarget pointer to point to default info directly. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8690] Purpose:Quincey Koziol2004-06-151-1/+16
| | | | | | | | | | | | Code optimization Description: Be smarter about copying hyperslab selection data and avoid memcpy() calls. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8686] Purpose:Quincey Koziol2004-06-144-29/+39
| | | | | | | | | | | | | Code optimization Description: Eliminate memcpy() when using default DXPL by pointing at existing default object, instead of copying it. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8683] Purpose:Quincey Koziol2004-06-1416-515/+481
| | | | | | | | | | | | | Code optimization Description: Use 'size_t' instead of 'hsize_t' to track the number of elements in memory buffers, especially for type conversion. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8681] Purpose: Take out an unnecessary stepRaymond Lu2004-06-141-4/+0
| | | | | | | | | Description: I put H5T_lock in H5T_open in last checkin but found it's unnacessary. Solution: Took it out. Platforms tested: RH 8(fuss). Simple change.
* [svn-r8679] Purpose:Quincey Koziol2004-06-141-16/+31
| | | | | | | | | | | | | Code optimization Description: Detect when a default property list is being used and just copy over the default VL allocation properties, instead of querying for them. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8677] Purpose:Quincey Koziol2004-06-1410-295/+194
| | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Remove old structures that used a union to store information about the dataspace extent and just store the information directly in the dataspace extent itself. Remove ifdef'd references to permutation ordering in dataspaces. We'll definitely need more than this code if/when we implement this feature. Change allocation of dataspace information from calloc() to malloc(). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8675] Purpose:Quincey Koziol2004-06-132-28/+7
| | | | | | | | | | | | | Code optimization Description: Using existing dataspace extent copying routine instead of duplicating the code (more slowly). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8673] Purpose:Quincey Koziol2004-06-1316-546/+626
| | | | | | | | | | | | | | | | | | Code optimization Description: Revised dataspace selections to use a more "object oriented" mechanism to set the function pointers for each selection and selection iterator. This reduces the amount and number of times that dataspace selection info has to be copied. Additionally, change hyperslab selection information to be dynamically allocated instead of an inline struct. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8672] Snapshot version 1.7 release 28HDF Admin2004-06-131-2/+2
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* [svn-r8670] Purpose:Quincey Koziol2004-06-133-16/+128
| | | | | | | | | | | | | Code optimization Description: Avoid a memory copy by directly reading from the variable-length sequence buffer when there is no type conversion on the way to disk. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8668] Purpose:Quincey Koziol2004-06-131-54/+63
| | | | | | | | | | | | | | Code optimization Description: Avoid running conversion routine when it's a noop. Also, pick a minimum size for the variable-sized sequence conversion buffer, instead of allocating lots of small buffers. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8666] Purpose:Quincey Koziol2004-06-133-165/+147
| | | | | | | | | | | | | | Code optimization Description: Restructure conversion loop of variable-length objects to avoid walking through memory backwards and allocating as many temporary buffers. (This uses the optimized method used in the atomic type conversions) Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8664] Purpose:Quincey Koziol2004-06-126-30/+426
| | | | | | | | | | | | | | Code optimization Description: Allow global heap collections to grow in size (up to a 64K limit) if they are able to. This allows them to grow to a more reasonable size than the 4K minimum size. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8661] Purpose: Add comments.Raymond Lu2004-06-111-2/+4
| | | | | | | Description: More comments to clarify action. Platforms tested: No code change, no test.
* [svn-r8656] Purpose:Quincey Koziol2004-06-112-10/+6
| | | | | | | | | | | | | Code optimization Description: Eliminate redundant memory allocation for type conversion of variable-length sequences. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8651] Purpose:Quincey Koziol2004-06-101-3/+3
| | | | | | | | | | | Code optimization Description: Eliminate redundant memset() when creating chunk map structure. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8648] Purpose:Quincey Koziol2004-06-102-14/+6
| | | | | | | | | | | | | Code optimization Description: Eliminate some operations through temporary variables in H5F_addr_encode. Eliminate some redundant memset()'s of structures that will be completely overwritten in the variable-length datatype code. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8646] *** empty log message ***Raymond Lu2004-06-103-5/+24
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* [svn-r8639] Purpose:Quincey Koziol2004-06-091-1/+1
| | | | | | | | | | | | Code optimization Description: Call malloc() instead of calloc() for data structure that we completely initialize. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8636] Purpose:Quincey Koziol2004-06-091-37/+65
| | | | | | | | | | | | Code optimization Description: Don't allocate conversion buffer larger than the user's buffer. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8630] Purpose:Quincey Koziol2004-06-091-1/+0
| | | | | | | | | | | | | | | | | Bug fix Description: Correct potential file corruption from mis-setting the metadata accumulator address. (Bugfix contributed by Sean Monner <seanm@quadrus.com>) Solution: When the new metadata overlaps with the end of the metadata accumulator and the accumulator grows in size, don't reset the address of the accumulator, since it hasn't moved. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8625] Purpose:Quincey Koziol2004-06-082-4/+38
| | | | | | | | | | | | | | | Code optimization Description: Avoid pushing errors on error stack when an object is not found in a B-tree. Sometimes we are just checking if the object exists before we insert it into the B-tree and the higher levels in the library should be responsible for determining if not finding the object in B-tree is really an error. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8623] Purpose:Quincey Koziol2004-06-081-6/+17
| | | | | | | | | | | | | Code optimization Description: Use default dataset transfer property list for internal metadata I/O operations when parallel I/O is disabled. This avoids multiple copies of the properties being made when the information is not needed. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel)
* [svn-r8620] Snapshot version 1.7 release 27HDF Admin2004-06-062-3/+4
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* [svn-r8618] Purpose:Quincey Koziol2004-06-052-153/+208
| | | | Fix makefiles, dependencies & manifest after source file rename.
* [svn-r8616] Purpose:Quincey Koziol2004-06-054-4526/+0
| | | | | | | | Rename these files Description: Since these files contain functions that are part of the dataset information now, rename them to H5D<foo>.c
* [svn-r8613] Purpose:Quincey Koziol2004-06-0521-2132/+2146
| | | | | | | | | | | | | | | | | Refactor code Description: Move chunk and contiguous cached raw data from file information to dataset information. This simplifies a number of internal interfaces, aligns the code with it's purpose better and should allow more optimizations to the chunked data I/O performance. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) h5committest Misc. update:
* [svn-r8604] Purpose: bug fixRaymond Lu2004-06-021-3/+7
| | | | | | | | | Description: For opaque datatype, if tag isn't defined, some operations will have trouble because the tag string is null. Solution: Initialize the tag string to empty string after the opaque type is created. Platforms tested: h5committest
* [svn-r8600] Purpose:Quincey Koziol2004-05-3113-179/+426
| | | | | | | | | | | | | Code optimization Description: Don't recompute the internal index value for looking up the chunk in the hash table, just use the value already computed from iterating through the chunks. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8590] Purpose:Quincey Koziol2004-05-2726-588/+850
| | | | | | | | | | | | | | | | | | | | | Code optimization & bug fix Description: When dimension information is being stored in the storage layout message on disk, it is stored as 32-bit quantities, possibly truncating the dimension information, if a dimension is greater than 32-bits in size. Solution: Fix the storage layout message problem by revising file format to not store dimension information, since it is already available in the dataspace. Also revise the storage layout data structures to be more compartmentalized for the information for contiguous, chunked and compact storage. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel Solaris 2.7 (arabica) h5committest
* [svn-r8565] Purpose:Albert Cheng2004-05-211-3/+93
| | | | | | | | | | | | | | Improvement Description: Break up the C99 integer types detection into even smaller sub-module routines. This has dropped the compile time (with optimization) from 94 seconds to 6 seconds. Platforms tested: h5committested. Misc. update:
* [svn-r8560] Purpose:Quincey Koziol2004-05-211-0/+2
| | | | | | | | | | | | Bug fix Description: Add prototypes for H5S_select_serial_size() and H5S_select_serialize() that were causing the library to fail when built with C++ compiler. Platforms tested: FreeBSD 4.9 (sleipnir) w/CC=g++ Only affects C++ builds, so no h5committest
* [svn-r8558] Purpose:Albert Cheng2004-05-201-3/+3
| | | | | | | | | | | Code cleanup Description: Changed local variables declaration to static to please compilers. Platforms tested: Tested by generating H5Tinit.c and verified it was same as before. Tested in TG_NCSA.
* [svn-r8548] Purpose:Albert Cheng2004-05-201-39/+157
| | | | | | | | | | | | | | | Improvement. Description: Some compilers, e.g., Intel C v7.0, took a long time to compile with optimization when a module routine contains many code lines. Divide up all those types detections macros into subroutines, both to avoid the compiler optimization error and cleaner codes. Platforms tested: h5committested. Misc. update:
* [svn-r8544] Purpose:Quincey Koziol2004-05-2013-266/+533
| | | | | | | | | | | | | | Code optimization Description: Expand the use of macros to inline trivial function pointer lookup and calls to reduce the overall number of functions invoked during normal operation of the library. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8531] Snapshot version 1.7 release 26HDF Admin2004-05-161-2/+2
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