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* Updated commentsJordan Henderson2017-03-301-20/+17
| | | | changed variable name for list containing all chunks in the I/O operation
* Add comments to H5D_filtered_collective_io_info_t data structureJordan Henderson2017-03-301-11/+11
| | | | Correct comment and error message about retrieving the threshold for performing either Linked-chunk or Multi-chunk I/O
* Merge branch 'feature/parallel_filters' of ↵Jordan Henderson2017-03-3062-2472/+8793
|\ | | | | | | ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5.git into feature/parallel_filters
| * Merge pull request #3 in ~JHENDERSON/hdf5 from develop to ↵Jordan Henderson2017-03-2062-2472/+8793
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | feature/parallel_filters * commit 'b359e8f1a2349d177e70d34560d0a089ce37c4c8': Description: Removed "#ifndef H5_NO_DEPRECATED_SYMBOLS" in file space tests, because the wrappers only use the latest functions now. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test) Purpose: Add new C++ wrappers Description: Because H5Pset_file_space and H5Pget_file_space are deprecated, changed to make wrappers for the new functions instead: H5Ps/get_file_space_strategy H5Ps/get_file_space_page_size Description: Fixed typos. Platforms tested: Linux/64 (jelly) Description: Deprecating versions of PropList::setProperty that have arguments that miss "const" Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test) Description: Miscellaneous clean-up: format and comments Platforms tested: Linux/64 (jelly) Darwin (osx1010test) Add toolset option to cmake configure Update cmake pubconf to match autotools and add strtoll checks Switch from HDatoll to HDstrtoll, for Windows compatibility. output_filter.sh: Comment added to address HDFFV-8270. The sample ontput in the file's comments are not up-to-date with the scripts in the file that remove output unique to certain systems when running test scripts. This output doesn't match expected output files for the tests, causing them to fail. Ther output_filter.sh file removes such output. Currently we don't have access to these systems to update the comments. Correct double sourcedir name on copied datafiles. HDFFV-10138 Merge app framework to examples Final merge of page buffering branch to develop Purpose: Add new C++ wrappers Description: Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist, H5Oopen, H5Oclose and H5Pset_virtual Bring changes to I/O parameters from page_buffering branch. Merge in reentrency changes to "make space in cache" from page_buffering branch. Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from a cache image. Remove some usage of "prefetched_dirty" flag (which hasn't been merged from the page_buffering branch yet. Also, bring over improvements to flush candidate entries for parallel code. Align with incoming page buffering changes: minor cleanups, centralize removing entries from collective metadata read list
| | * Update cmake pubconf to match autotools and add strtoll checksAllen Byrne2017-03-163-18/+39
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| | * Final merge of page buffering branch to developQuincey Koziol2017-03-1452-1717/+7486
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| | * Bring changes to I/O parameters from page_buffering branch.Quincey Koziol2017-03-1313-221/+324
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| | * Merge in reentrency changes to "make space in cache" from page_buffering branch.Quincey Koziol2017-03-132-0/+38
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| | * Minor cleanups and bring over "prefetched dirty" fixes for entries loaded fromQuincey Koziol2017-03-129-31/+204
| | | | | | | | | | | | a cache image.
| | * Remove some usage of "prefetched_dirty" flag (which hasn't been merged from theQuincey Koziol2017-03-103-416/+577
| | | | | | | | | | | | | | | page_buffering branch yet. Also, bring over improvements to flush candidate entries for parallel code.
| | * Align with incoming page buffering changes: minor cleanups, centralize removingQuincey Koziol2017-03-073-77/+133
| | | | | | | | | | | | entries from collective metadata read list
* | | Remove debugging statementsJordan Henderson2017-03-301-342/+6
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* | Merge pull request #2 in ~JHENDERSON/hdf5 from HDFFV/hdf5:develop to ↵Jordan Henderson2017-03-1047-1630/+8478
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | feature/parallel_filters * commit '56e5b4ed05fb3bad51c226ec5b567871a45e0bce': (112 commits) updated AM_SILENT_RULES syntax Added a check for AM_SILENT_RULES before enabling it. Fix alignment Fix vds tests Correct result code for strings test Add extension to filename HDFFV-10128 fix string compare and add tests Description: Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor Lowercase math and set CMake commands Added "flush" and "refresh" to testflushrefresh.sh error output so it's easier to see where errors in the script occur. Misc. small cleanups to sync against incoming page buffering changes. Update CMake formatting Update CMake files and formatting Normalize against incoming page buffering changes. HDFFV-10120 verify nozlib checking with tools tests cmake non-code typo Correct issues from pull request reviews. Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0: Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes. Revert "Fix some more signed -> unsigned value issues with cache data structures, also" Added virtual to list ...
| * Misc. small cleanups to sync against incoming page buffering changes.Quincey Koziol2017-03-023-57/+31
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| * Normalize against incoming page buffering changes.Quincey Koziol2017-03-017-757/+749
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| * Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0:Quincey Koziol2017-02-287-251/+187
| | | | | | | | | | Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes.
| * Revert "Fix some more signed -> unsigned value issues with cache data ↵Quincey Koziol2017-02-286-83/+143
| | | | | | | | | | | | structures, also" This reverts commit 4b5e05c084f93c35dae946c2c9e814d565a613b0.
| * Align w/incoming page buffering changes.Quincey Koziol2017-02-259-182/+121
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2017-02-231-2/+2
| |\ | | | | | | | | | merge_page_buffering_03
| | * Changed C++ comments to C comments in H5win32defs.h.Dana Robinson2017-02-221-2/+2
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| * | Fix some more signed -> unsigned value issues with cache data structures, alsoQuincey Koziol2017-02-236-143/+83
| |/ | | | | | | misc. style cleanups. All to align w/incoming page_buffering changes.
| * Cleanups and normalizations against incoming page_buffering changes.Quincey Koziol2017-02-203-15/+23
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| * Switch major error code from H5E_FSPACE [back] to H5E_RESOURCEQuincey Koziol2017-02-182-102/+102
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| * Misc. style cleanups from the page_buffering branch.Quincey Koziol2017-02-187-673/+436
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| * Minor warning fixes.Dana Robinson2017-02-091-1/+1
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| * Merge pull request #281 in HDFFV/hdf5 from ↵Allen Byrne2017-02-031-0/+1
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:bugfix/HDFFV-9875-investigate-adding-static-library to develop * commit 'd1292691c42cbc548fc7e4b39e4dd9cc1a376f94': HDFFV-9875 enable static pdb and cleanup exports Add static lib to pdb exports HDFFV-9875 Fix typo HDFFV-9875 Change test for shared libs HDFFV-9875 Remove compile pdb references HDFFV-9875 Fix target exports and add static tools pdb files
| | * Add static lib to pdb exportsAllen Byrne2017-02-021-1/+1
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| | * HDFFV-9875 Fix target exports and add static tools pdb filesAllen Byrne2017-02-021-0/+1
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| * | Optimize loading cache image, removing lots of memory allocations and copies.Quincey Koziol2017-02-031-201/+150
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| * | Simplify H5C__serialize_single_entry(), using H5C__generate_image()Quincey Koziol2017-02-023-199/+74
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| * Merge pull request #274 in HDFFV/hdf5 from develop_merge_cache_image_08 to ↵Quincey Koziol2017-01-311-41/+15
| |\ | | | | | | | | | | | | | | | | | | develop * commit '0827105ddaffa5024ed25bd0268aa329f4b97e74': Review changes to closing files on error in H5Fcreate.
| | * Review changes to closing files on error in H5Fcreate.Quincey Koziol2017-01-311-41/+15
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| * | Update sanity checks for dataset refresh code.Quincey Koziol2017-01-311-3/+2
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| * Add missing filesQuincey Koziol2017-01-293-0/+4789
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| * Cache image feature and testingQuincey Koziol2017-01-2924-131/+2945
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| * Bring change to use array of metadata cache entry classes for H5C_createQuincey Koziol2017-01-2819-214/+95
| | | | | | | | instead of array of class names from cache image branch.
| * Switch list lengths to unsigned integers (to align better w/cache image merge)Quincey Koziol2017-01-289-161/+110
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| * Commit Vailin's fix for the h5format_convert test failure.lrknox2017-01-261-0/+5
| | | | | | | | | | | | DAILYTEST-256 #2. Tested on emu, kituo, mayll, ostrich, and osx1011dev with previously failing test configurations.
| * Update cmake min version and cmake command conventionAllen Byrne2017-01-101-18/+18
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* | Revert "Merge latest changes from develop"Jordan Henderson2017-03-1043-4394/+1627
| | | | | | | | This reverts commit 104d63f25a8cb6e156bc901eb85aafc0b67775ee.
* | Merge latest changes from developJordan Henderson2017-03-1043-1627/+4394
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* | removed erroneous casts from non-rvalue H5MM_free() calls. Replaced ↵Frank T Willmore2017-02-211-6/+12
| | | | | | | | assignment of void return values with explicit value of NULL
* | Fix issue with uninitialized chunk index during chunk re-insertion intoJordan Henderson2017-02-201-2/+12
| | | | | | index
* | Remove potential infinite loops caused by goto in error label regionJordan Henderson2017-02-101-3/+3
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* | Remove note about src_type_size vs dst_type_sizeJordan Henderson2017-02-091-1/+0
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* | Trigger error if library tries to break to independent I/O with filtersJordan Henderson2017-02-082-0/+8
| | | | | | in the pipeline
* | Fix issue in H5D__mpio_array_gather when no one contributes anythingJordan Henderson2017-02-031-22/+28
| | | | | | | | Fix issue in Multi-chunk IO where IO would crash if no one has a selection
* | Iterator for initial chunk entry IO operation should use source datatypeJordan Henderson2017-02-031-1/+1
| | | | | | size
* | Fix bug where data doesn't write correctly when MEMSPACE isnt the sameJordan Henderson2017-02-031-7/+33
| | | | | | as FILESPACE
* | Check return value of H5S_GET_EXTENT_NPOINTS macroJordan Henderson2017-02-021-13/+31
| | | | | | | | | | Fix bug where a process with no selection during Multi-chunk IO could cause other processes to copy back incorrect chunk information after chunk re-allocation
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