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* Moved the SWMR + cache image check up before the root groupDana Robinson2017-10-211-15/+8
| | | | is constructed to avoid the special case close.
* Moved the 'cache image + SWMR' check from H5Fcreate/open to H5F_open.Dana Robinson2017-10-192-18/+18
| | | | Prep for the VOL merge.
* Merge pull request #704 in HDFFV/hdf5 from optimize_superblock_read to developRichard Warren2017-10-131-43/+90
|\ | | | | | | | | | | | | | | | | | | | | * commit '3dde6d0e32461f46630f814a2fdfbd4c813703bf': Updated the code and RELEASE.txt note per comments from John Mainzer Try to address most of the issues raised by Dana in the code review Made edits suggested by John as part of the code review Update the MANIFEST and release_docs/RELEASE files Add a test for parallel reads of independent files using MPI subgroups Edits to the file open optimization and associated test code to bring them closer to the HDF5 library's unwritten coding standards. Also bug fix to repair a hang in testphdf5. The initial coding for the superblock read optization
| * Try to address most of the issues raised by Dana in the code reviewRichard Warren2017-10-111-51/+51
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| * Add a test for parallel reads of independent files using MPI subgroupsRichard Warren2017-10-092-34/+7
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| * Edits to the file open optimization and associated testmainzer2017-10-052-11/+38
| | | | | | | | | | | | | | code to bring them closer to the HDF5 library's unwritten coding standards. Also bug fix to repair a hang in testphdf5. Tested parallel/debug on Charis and Jelly, parallel/production on Jelly.
| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Richard Warren2017-09-2811-43/+65
| |\ | | | | | | | | | optimize_superblock_read
| * | The initial coding for the superblock read optizationRichard Warren2017-09-282-2/+49
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* | | HDFFV-10297 update calls to H5Zfilter_availAllen Byrne2017-10-091-1/+2
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* | | HDFFV-10297 - fix repack individual objectsAllen Byrne2017-10-062-233/+222
| | | | | | | | | includes H5Zfilter_avail() fix
* | | Whitespace conversions and comment updatesAllen Byrne2017-10-041-535/+382
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* | | Better segregate clean & dirty LRU lists so that they are only defined whenQuincey Koziol2017-09-305-0/+16
| |/ |/| | | | | the H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS macro is defined.
* | Style cleanups and misc. bugfixes discovered during full SWMR development.Quincey Koziol2017-09-2311-43/+65
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* Restore previousAllen Byrne2017-09-191-1/+1
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* Generate headers for 1.10 should default offAllen Byrne2017-09-121-1/+1
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* Revert malloc's back to using hard-coded type for sizeofJordan Henderson2017-09-011-23/+23
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* Minor comment refactoringJordan Henderson2017-09-011-3/+4
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* Update documentationJordan Henderson2017-08-311-39/+158
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-08-246-453/+455
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '593e4038b3ab474a47e468bb3478d4ae3a6820e6': Fix for daily test failure Fix for the compilation error from the PGI compiler. Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c HDFFV-10188 force non-native type description HDFFV-10188 emu insists on printing non-native description Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return. HDFFV-10188 fix typo HDFFV-10188 add missing copy commands HDFFV-10188 Add tests and files HDFFV-10188 enable null space test HDFFV-10188 add release note HDFFV-10188 - Check for empty string first HDFFV-10188 error on NULL dataspace
| * Fix for daily test failureVailin Choi2017-08-241-1/+1
| | | | | | | | Fix for the compilation error from the PGI compiler.
| * Modifications based on comments from pull request reviewVailin Choi2017-08-234-47/+26
| | | | | | | | | | (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
| * Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 fileVailin Choi2017-08-226-415/+438
| | | | | | | | | | Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
* | Updated H5C__flush_single_entry() in H5C.c to correctmainzer2017-08-151-8/+18
| | | | | | | | | | | | | | duplicate metadata write bug observed in 1.10.1. Tested parallel/production on jelly parallel/debug & parallel/production on charis (in develop branch)
* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Jordan Henderson2017-08-1122-888/+2362
|\ \ | |/ | | | | develop
| * Moved H5PL diagnostic pragmas to comply with old gcc requirements that theyDana Robinson2017-08-022-17/+19
| | | | | | | | be outside of functions.
| * Minor tweaks in response to code review.Dana Robinson2017-08-011-6/+2
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| * Merge branch 'develop' into h5pl_commitDana Robinson2017-08-014-19/+24
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| | * Skip test in test/fheap.c when:Vailin Choi2017-07-181-1/+1
| | | | | | | | | | | | | | | | | | a) multi/split drivers and b) persisting free-space or using paged aggregation strategy because the library will fail file creation (temporary) for the above conditions.
| | * Changes made based on RFC review commentsVailin Choi2017-07-184-18/+23
| | | | | | | | | | | | Test the changes in a branch via daily testing.
| * | Major rework of H5PL package code before bringing VOL changesDana Robinson2017-07-1413-817/+1856
| |/ | | | | | | | | | | | | | | over. Brings coding standards in line with the rest of the library, enforces better software engineering principles, and makes everything more maintainable.
| * Merge pull request #596 in HDFFV/hdf5 from GreaterThan-2GB-MPIO to developRichard Warren2017-07-131-46/+458
| |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit '6a5aa46e936340ed540359290374fa909f9213a6': Added a brief outline for Large MPI-IO transfers into RELEASE.txt Fix up the ExpressMode check for skipping slow running tests. Include code fixes and additional modifications pointed out by code reviewers Commited changes to the development branch here to allow a pull request to be published Commit changes needed for pull request
| | * Include code fixes and additional modifications pointed out by code reviewersRichard Warren2017-07-101-6/+6
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| | * Commited changes to the development branch here to allow a pull request to ↵Richard Warren2017-07-051-46/+458
| | | | | | | | | | | | be published
| * | Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-104-6/+26
| |/ | | | | | | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* | Fix bug where incorrect amount of data was being read from the fileJordan Henderson2017-08-101-1/+1
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* | Add test file to build processJordan Henderson2017-08-031-1/+1
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* | Suggested changes from code reviewJordan Henderson2017-07-075-12/+60
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* | Amend header comment errorJordan Henderson2017-07-061-19/+18
| | | | | | Suggested fix for allocating too small of a buffer for the chunk data
* | Clean up remaining warningsJordan Henderson2017-07-061-6/+21
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* | Add prototype for H5D__cmp_filtered_collective_io_info_entry_ownerJordan Henderson2017-07-051-0/+2
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* | Add comment for memory copy possibly not being necessary anymore forJordan Henderson2017-07-051-0/+1
| | | | | | Multi-Chunk I/O
* | Remove use of H5E_CANTDISTRIBUTE errorJordan Henderson2017-07-052-2/+1
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* | Add comment for full overwrite special caseJordan Henderson2017-07-051-0/+8
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* | Add remaining documentation/commentsJordan Henderson2017-07-051-23/+54
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-07-05442-4893/+4415
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '6428a637752753cc8a9007c0c3c38b9ea9cc97fd': (165 commits) Skip HDFFV-10160 filenotclosed test for split/multi driver Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting More minor whitespace cleanup Fixed a minor comment typo in H5R.c * Reverted removal of H5I_REFERENCE to avoid breaking binary compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c. Added missing free() call to test_misc19(). Purged the unused H5I_REFERENCE from the library. Added a test for VFD IDs to testhdf5. Revert "Partial removal of NDEBUG ifdefs from the library." Partial removal of NDEBUG ifdefs from the library. Removed compiler flag cleanup since Solaris chokes on it. Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file. Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true. Updated the --enable-debug/production handling in configure.ac so that it more reliably indicates that the configure option can no longer be used. Previously, using --enable-debug="", etc. would not trigger an error (even though such usage is unlikely). Added awk processing to remove extraneous whitespace from H5_ flags in configure. Fixed a comment in configure.ac HDFFV-10219 another mode change HDFFV-10219 change subset to use BINARY mode for h5dump HDFFV-10219 default input binary to NATIVE Set default of var to NATIVE HDFFV-10219 - disable h5dump tests until h5import NATIVE is fixed ...
| * More minor whitespace cleanupDana Robinson2017-07-031-3/+3
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| * Fixed a minor comment typo in H5R.cDana Robinson2017-07-031-1/+1
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| * * Reverted removal of H5I_REFERENCE to avoid breaking binaryDana Robinson2017-07-0315-5/+100
| | | | | | | | | | | | compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c.
| * Purged the unused H5I_REFERENCE from the library.Dana Robinson2017-07-0114-115/+22
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| * Added a test for VFD IDs to testhdf5.Dana Robinson2017-07-012-243/+70
| | | | | | | | | | | | | | This required adding some code to generate a fake VFD class to pass to H5FDregister(). Also, a bunch of whitespace and comment tidying.
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