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* [svn-r19113] Description:Quincey Koziol2010-07-2020-120/+29
| | | | | | | | Rename H5AC_set() to H5AC_insert_entry() Get rid of H5C_set_skip_flags() & related flags Tested on: Eyeballed only, very simple...
* [svn-r18911] Description:Quincey Koziol2010-05-2724-391/+252
| | | | | | | | | More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18863] Description:Quincey Koziol2010-05-2021-1192/+173
| | | | | | | | | | | | | General cleanups to align metadata journaling branch and trunk Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18861] Description:Quincey Koziol2010-05-202-74/+151
| | | | | | | | | | | Upgrade autoconf framework and run bin/reconfigure, to align better with metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode
* [svn-r18822] Description:Quincey Koziol2010-05-1512-234/+183
| | | | | | | | | | Remove the size parameter from H5[A]C_unprotect() and the H5[A]C__SIZE_CHANGED_FLAG, switching all clients & tests over to using H5[A]C_resize_entry appropriately. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & prod (h5committest not required on this branch)
* [svn-r18789] Description:Quincey Koziol2010-05-131-4/+3
| | | | | | | | | Correct error in H5C_resize_entry() where protected entry sizes were not updated if the entry being resized was both pinned and protected. Tested on: Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode (h5committest not required on this branch)
* [svn-r18738] Description:Quincey Koziol2010-05-079-54/+54
| | | | | | | | | | | Switch H5AC_resize_pinned_entry() to work on protected entries as well, and rename to H5AC_resize_entry() Tested on: Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode (h5committest not required on this branch)
* [svn-r18724] Description:Quincey Koziol2010-05-0616-350/+297
| | | | | | | | Rename H5[A]C_rename to H5[A]C_move_entry. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & production (h5committest not required on this branch)
* [svn-r18720] Description:Quincey Koziol2010-05-0613-221/+34
| | | | | | | | | | | | | | | | | | | Bring changes from metadata journaling branch to 'merging' branch: Rename H5[A]C_mark_pinned_or_protected_entry_dirty() to H5[A]C_mark_entry_dirty() and get rid of H5[A]C_mark_pinned_entry_dirty(). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18715] Description:Quincey Koziol2010-05-0522-98/+146
| | | | | | | | Changes to further align trunk with state of metadata journaling branch. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & production (h5committest not required on this branch)
* [svn-r18672] Description:Quincey Koziol2010-04-2948-451/+922
| | | | | | | | | | | | | | | | | | Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18570] Description:Quincey Koziol2010-04-156-4/+9
| | | | | | | | | Fix a memory leak, a problem in the metadata accumulator and clean up a few compiler warnings. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, prod & parallel (h5committest not required on this branch)
* [svn-r18542] Description:Quincey Koziol2010-04-1026-870/+2385
| | | | | | | | | | | | | | | | | | | | | Bring new object header pin/unpin & protect/unprotect routines and split-out object header chunk proxy changes from metadata_journaling branch to "merging" branch, along with some other minor tweaks to clean up compiler warnings, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18523] Description:Quincey Koziol2010-04-064-37/+59
| | | | | | | | | | Bring metadata journaling branch into closer correspondence with trunk: extract data structure freeing routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18519] Description:Quincey Koziol2010-04-065-16/+83
| | | | | | | | | | Bring metadata journaling branch into closer correspondence with trunk: extract data structure freeing routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18501] Description:Quincey Koziol2010-04-025-60/+96
| | | | | | | | | Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18497] Description:Quincey Koziol2010-04-026-70/+219
| | | | | | | | | Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18491] Description:Quincey Koziol2010-04-0110-223/+440
| | | | | | | | | Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18483] Description:Quincey Koziol2010-04-013-23/+1
| | | | | | | | Remove unused symbol table entry dirty flag. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18481] Description:Quincey Koziol2010-04-012-60/+21
| | | | | | | | | A couple of tweaks to bring the "merging" branch into better sync with the metadata journaling branch. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5committest not required on this branch)
* [svn-r18459] Description:Quincey Koziol2010-03-2524-768/+696
| | | | | | | | | | | | | | | | | | | | Further convergence of the metadata journaling changes toward the trunk. Lots of little things in the cache code, remove the H5F_t * from the H5G_entry_t struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18356] Description:Quincey Koziol2010-03-0225-169/+126
| | | | | | | | | | | | Converge metadata journaling branch with trunk with a bunch of v1 B-tre changes: - Remove H5ACprivate.h header from H5Bprivate.h header - Revise v1 B-tree client callbacks - Get rid of H5B_serialize() by bringing it into H5B_flush() Tested on: Mac OS X/32 10.6.2 (amazon) w/debug, prod & parallel (h5committest not required on this branch)
* [svn-r18229] Description:Quincey Koziol2010-02-113-2445/+2451
| | | | | | | | | | | Bring r18227 from metadata_journaling branch to the merging branch: Small cleanups and move v1 cache maintenance macros into package header file, to better align with changes to v2 cache. Tested on: FreeBSD 6.3/32 (duty) w/debug (h5committest not required on this branch)
* [svn-r18196] Description:Quincey Koziol2010-01-3092-854/+854
| | | | | | | | | Trim trailing whitespace from source files, with the following command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - just eyeballed
* [svn-r18169] Description:Quincey Koziol2010-01-2624-691/+413
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Converge changes on metadata_journaling branch and trunk: - Remove H5F_t* parameter from H5HL_unprotect() - Remove H5F_t* parameter from H5HL_dirty() - Remove H5F_t* parameter from H5O_unprotect() - Bring changes to metadata caching routines back: - H5AC_pin_protected_entry() - H5AC_resize_pinned_entry() - H5AC_unpin_entry() - H5AC_mark_pinned_entry_dirty() - H5AC_mark_pinned_or_protected_entry_dirty() - Revise internal H5C routines to drop H5F_t* and/or H5C_t* as parameter where possible - Revise tests to follow internal routine changes Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18104] Description:Quincey Koziol2010-01-121-1/+1
| | | | | | | | | Minor brush-clearing changes to converge metadata_journaling branch and trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & prod (h5committest not required on this branch)
* [svn-r18071] Description:Quincey Koziol2010-01-0721-555/+1681
| | | | | | | | | | Refactor local heap routines with changes from metadata journaling branch, along with other misc. changes as the changes on the metadata journaling branch are being converged with the current state of the trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & prod (h5committest not required on this branch)
* [svn-r18044] Description:Quincey Koziol2009-12-205-50/+36
| | | | | | | | | | Slush changes back & forth between trunk, the merging branch and the metadata journaling branch to level them out to a reasonably common set of code to work from for the next set of more significant changes. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18041] Description:Quincey Koziol2009-12-1910-971/+1166
| | | | | | | | | | | Move local & global heap metadata cache callback routines to their own source module, as they are in later revisions of the trunk and on the metadata journaling branch, in order to make the convergence of the trunk and the metadata journaling branch easier. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18035] Description:Quincey Koziol2009-12-1928-733/+476
| | | | | | | | | More "brush clearing" convergence between metadata_journaling branch and the trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & prod (h5committest not required on this branch)
* [svn-r18030] Description:Quincey Koziol2009-12-1760-2057/+840
| | | | | | | | | | | | | | | | | | | | | | | Bring "brush clearing" changes (whitespace & style issues, mostly) from metadata_journaling branch to the "merging" branch, to converge the trunk and the metadata_journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15455] Snapshot version 1.9 release 13HDF Tester2008-08-102-3/+3
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* [svn-r15451] Purpose: Fix various problems that were occurring when using ↵Neil Fortner2008-08-077-131/+128
| | | | | | | | | | | | | | | | mounted files. Description: Moved mount table from top file structure to shared file structure. Moved parent out of mount table and back into top file structure. Mounted files can now be accessed from any handle of the parent file. Changes to how files are closed. Stricter cycle checking on mounted files. Removed unused function H5F_has_mount(). Tested: committest in 1.8 branch. Committing now due to the urgency of the fix. No changes here are specific to the trunk, but I will keep an eye on the daily tests.
* [svn-r15425] Snapshot version 1.9 release 12HDF Tester2008-08-032-3/+3
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* [svn-r15410] Snapshot version 1.9 release 11HDF Tester2008-07-272-3/+3
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* [svn-r15395] When an attribute was opened twice and data was written with ↵Raymond Lu2008-07-229-413/+648
| | | | | | | | | | | one of the handles, the file didn't have the data. It happened because each handle had its own object structure, and the empty one overwrote the data with fill value. This is fixed by making some attribute information like the data be shared in the attribute structure. Tested on smirom, kagiso, and linew.
* [svn-r15389] Snapshot version 1.9 release 10HDF Tester2008-07-202-3/+3
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* [svn-r15375] Description:Quincey Koziol2008-07-161-2/+2
| | | | Bump shared library version # for change to H5G_info_t struct
* [svn-r15374] Description:Quincey Koziol2008-07-161-3/+3
| | | | | | | Correct wrong error return value to avoid compiler warning Tested on: Just eyeballed, extremely minor
* [svn-r15367] Description:Quincey Koziol2008-07-155-1/+61
| | | | | | | | | | | | | | | | Add check to avoid mounting the a file on a group twice, then the mounts are done on the same HDF5 file, but opened with separate H5Fopen calls. Also add new 'mounted' flag to the H5G_info_t struct, queried with the H5Gget_info() API call, to allow applications to detect and avoid this situation. This probably fixes Bz#1070 also, I'll check with Dan Anov (who reported a different sort of behavior, but seems to have the same underlying problem). Tested on: Mac OS X/32 10.5.4 (amazon) Linux/64 2.6 (chicago)
* [svn-r15347] Snapshot version 1.9 release 9HDF Tester2008-07-132-3/+3
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* [svn-r15335] Fixed incorrect error message in H5Pset_fletcher32:Neil Fortner2008-07-081-1/+1
| | | | | | | | "unable to add deflate filter to pipeline" -> "unable to add fletcher32 filter to pipeline" Tested: kagiso
* [svn-r15322] Snapshot version 1.9 release 8HDF Tester2008-07-062-3/+3
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* [svn-r15299] A modification of the changes made in last commit. The problem ↵Raymond Lu2008-06-301-10/+10
| | | | | | | | was that H5Tpack didn't act correctly with nested compound datatype. This code is better. Tested on smirom - simple change.
* [svn-r15290] H5Tpack didn't act correctly with nested compound datatype. ↵Raymond Lu2008-06-272-6/+9
| | | | | | | | The new size of the type in the inner nest wasn't passed to the outer nest. This has been fixed. Tested on kagiso, linew, smirom.
* [svn-r15227] Description:Quincey Koziol2008-06-177-11/+13
| | | | | | | | | | | | | | | | | | Small clean up of datatype copying. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15224] Description:Quincey Koziol2008-06-171-14/+24
| | | | | | | Clean up a few more compiler warnings. Tested on: FreeBSD/64 6.2 (liberty)
* [svn-r15215] Snapshot version 1.9 release 7HDF Tester2008-06-152-3/+3
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* [svn-r15211] Description:Quincey Koziol2008-06-1313-48/+108
| | | | | | | | | | | | | | | | | | | | Update the gcc flags for version 4.3 Clean up warnings Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15208] Description:Quincey Koziol2008-06-122-6/+9
| | | | | | | | | | | | | | | | | | | | Add a "HDcompile_assert" macro for assertions that can/should be checked at compile time, as opposed to run time. (And used it for a couple of simple cases, to begin) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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