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* Merge branch 'develop' into multi_rd_wd_coll_io_mergeM. Scot Breitenfeld2017-11-2846-6220/+5720
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| * Fixed misc Warnings flagged by VS2017.Dana Robinson2017-11-274-120/+118
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| * Made a dcpl layout struct in H5Z.c dynamic to quiet a stack size warning.Dana Robinson2017-11-211-12/+19
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| * Fixed an uninitialized filter callback struct in H5Dchunk.c andDana Robinson2017-11-215-114/+144
| | | | | | | | | | | | unified the naming and initialization of said struct throughout the library. This was causing a crash on VS2015 in debug mode when the debug heap complained. Fixes HDFFV-10330.
| * Fixed Windows code in H5PLpath.cDana Robinson2017-11-211-1/+1
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| * Brings H5Z and H5PL packages in sync with VOL integration branch.Dana Robinson2017-11-177-127/+147
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| * HDFFV-10328 - fix typosAllen Byrne2017-11-171-5/+4
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| * HDFFV-10328 - remove allocation changesAllen Byrne2017-11-173-70/+6
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| * Fix typoAllen Byrne2017-11-161-1/+1
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| * HDFFV-10328 merge allocation changes from 1.8Allen Byrne2017-11-163-340/+422
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| * Correct linkage of filters and other libsAllen Byrne2017-11-161-2/+2
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| * Minor warning fixesDana Robinson2017-11-151-24/+22
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| * Merge pull request #778 in HDFFV/hdf5 from ↵Dana Robinson2017-11-155-2667/+2738
| |\ | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5o_schism_work to develop * commit 'fcfc5f116d08642de962919ac26092c74b924644': Moved code from H5O.c to H5Oint.c Added H5Oint.c file.
| | * Moved code from H5O.c to H5Oint.cDana Robinson2017-11-143-2662/+2662
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| | * Added H5Oint.c file.Dana Robinson2017-11-144-5/+76
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| * | Correct link lines of librariesAllen Byrne2017-11-141-2/+2
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| * Merge pull request #772 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:ar_warning_fix ↵Dana Robinson2017-11-141-0/+1
| |\ | | | | | | | | | | | | | | | | | | to develop * commit 'a25366cc980695cebe40c2d471bfe5166dcb28a2': Fixed that annoying ar warning about -u being ignored.
| | * Fixed that annoying ar warning about -u being ignored.Dana Robinson2017-11-131-0/+1
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| * | Merge pull request #770 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to developNeil Fortner2017-11-131-7/+8
| |\ \ | | |/ | |/| | | | | | | | | | * commit 'bca20b40b4966552a844051c3d912d6aec50592f': Initialize hid_t variables in test_Attr_bug9. Fix HDFFV-10274. When deleting all (or almost all) of the messages in an object header chunk, where the total amount deleted was greater than 64K, an error would occur due to an off by one error in the code that handled that case. Fixed this and added a test case.
| | * Merge branch 'develop' of ↵Neil Fortner2017-11-1026-2976/+2339
| | |\ | | | | | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop
| | * | Fix HDFFV-10274. When deleting all (or almost all) of the messages inNeil Fortner2017-11-101-7/+8
| | | | | | | | | | | | | | | | | | | | | | | | an object header chunk, where the total amount deleted was greater than 64K, an error would occur due to an off by one error in the code that handled that case. Fixed this and added a test case.
| * | | Merge pull request #767 in HDFFV/hdf5 from ↵Dana Robinson2017-11-111-7/+1
| |\ \ \ | | |_|/ | |/| | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:zero_allocation_fix_develop to develop * commit '3e4f6138b60d8363c377e453d63f875775ec907a': Removed asserts from H5MM calls that conflict with stated behavior and added a test to ensure that this doesn't happen in the future.
| | * | Removed asserts from H5MM calls that conflict with stated behaviorDana Robinson2017-11-091-7/+1
| | | | | | | | | | | | | | | | and added a test to ensure that this doesn't happen in the future.
| * | | Cleaned up misc warnings in src and test.Dana Robinson2017-11-105-8/+7
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| * | | Merge pull request #762 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5r_cleanup to ↵Dana Robinson2017-11-0913-854/+950
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | develop * commit 'd0e32b545c41dcc36a69ab146b54b55e7ac9dc07': Split internal H5R functionality into H5Rint.c.
| | * | Split internal H5R functionality into H5Rint.c.Dana Robinson2017-11-0813-854/+950
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| * | Remove tabsAllen Byrne2017-11-082-216/+144
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| * | Remove tabsAllen Byrne2017-11-083-1297/+809
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| * | Remove tabsAllen Byrne2017-11-081-17/+17
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| * | Remove tabsAllen Byrne2017-11-081-68/+68
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| * | Remove tabsAllen Byrne2017-11-081-516/+344
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* | updated MD benchmarking codeM. Scot Breitenfeld2017-11-101-0/+2
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* | Merge branch 'develop' into multi_rd_wd_coll_io_mergeM. Scot Breitenfeld2017-11-021-7/+7
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| * Correct usage of MPI varsAllen Byrne2017-11-011-6/+4
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| * Convert to use MPI:: for linkAllen Byrne2017-11-011-2/+4
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| * Correct command usageAllen Byrne2017-11-011-5/+5
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| * Change MPI target properties for libraryAllen Byrne2017-11-011-2/+2
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* | Merge branch 'develop' into multi_rd_wd_coll_io_mergeM. Scot Breitenfeld2017-10-301-0/+1
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| * Add a missing declaration for testingRichard Warren2017-10-271-0/+1
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* | Merge branch 'develop' into multi_rd_wd_coll_io_mergeM. Scot Breitenfeld2017-10-232-17/+10
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| * Moved the SWMR + cache image check up before the root groupDana Robinson2017-10-211-15/+8
| | | | | | | | is constructed to avoid the special case close.
| * Moved the 'cache image + SWMR' check from H5Fcreate/open to H5F_open.Dana Robinson2017-10-192-18/+18
| | | | | | | | Prep for the VOL merge.
* | Merge branch 'develop' into multi_rd_wd_coll_io_mergeM. Scot Breitenfeld2017-10-133-276/+313
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| * Merge pull request #704 in HDFFV/hdf5 from optimize_superblock_read to developRichard Warren2017-10-131-43/+90
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '3dde6d0e32461f46630f814a2fdfbd4c813703bf': Updated the code and RELEASE.txt note per comments from John Mainzer Try to address most of the issues raised by Dana in the code review Made edits suggested by John as part of the code review Update the MANIFEST and release_docs/RELEASE files Add a test for parallel reads of independent files using MPI subgroups Edits to the file open optimization and associated test code to bring them closer to the HDF5 library's unwritten coding standards. Also bug fix to repair a hang in testphdf5. The initial coding for the superblock read optization
| | * Try to address most of the issues raised by Dana in the code reviewRichard Warren2017-10-111-51/+51
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| | * Add a test for parallel reads of independent files using MPI subgroupsRichard Warren2017-10-092-34/+7
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| | * Edits to the file open optimization and associated testmainzer2017-10-052-11/+38
| | | | | | | | | | | | | | | | | | | | | code to bring them closer to the HDF5 library's unwritten coding standards. Also bug fix to repair a hang in testphdf5. Tested parallel/debug on Charis and Jelly, parallel/production on Jelly.
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Richard Warren2017-09-2811-43/+65
| | |\ | | | | | | | | | | | | optimize_superblock_read
| | * | The initial coding for the superblock read optizationRichard Warren2017-09-282-2/+49
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| * | | HDFFV-10297 update calls to H5Zfilter_availAllen Byrne2017-10-091-1/+2
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