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* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-023-2/+18
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13827] Description:Quincey Koziol2007-06-012-1/+56
| | | | | | | | | Close another memory leak for VL fill values, and clean up some temporary data structures on error. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13825] Description:Quincey Koziol2007-05-319-37/+157
| | | | | | | | | Incremental step forward in fixing problems with fill values that have a variable-length daattype. This set of changes fixes problems with the copying the property list values. tested Tn: Mac OS X/32 10.4.9 (amazon)
* [svn-r13823] Description:Quincey Koziol2007-05-311-1/+1
| | | | | | | Minor code cleanup to reduce initialization overhead. Tested on: Mac OS X/32 10.4.9 (amazon)
* [svn-r13822] Description:Quincey Koziol2007-05-311-0/+1
| | | | | | | | Undef the "post copy file" macro for "new style" fill values before defining it again. Tested on: FreeBSD/32 6.2 (duty) w/gcc 4.2
* [svn-r13821] Peter Cao2007-05-3010-4/+131
| | | | | | | | | | | | | | | | | | | | | Fixed a bug at copying shared reg_ref attribute. The ref values of an attribute was not writen in file. The post_copy_file() at H5Oattr.c only updates the value in memory. To fix the problem, we added H5O_shared_post_copy_file(), which delete the attribute in file (with the incorrect value) and create an new attribute with the correct values. I added the following functions: H5Oshared.c:H5O_shared_post_copy_file(H5F_t *f, hid_t dxpl_id, H5O_t *oh, void *mesg); H5Oshared.h: H5O_SHARED_POST_COPY_FILE and modified the following files to include shared_post_copy_file() H5Oattr.c H5Odtype.c H5Ofill.c H5Opline.c H5Osdspace.c
* [svn-r13816] Description:Quincey Koziol2007-05-291-29/+33
| | | | | | | | Fix a few typos and a small memory leak. Tested on: FreeBSD/32 6.2 (duty) Linux/64 2.6 (chicago2)
* [svn-r13815] Description:Quincey Koziol2007-05-292-0/+11
| | | | Regenerate configuration files after latest checkin
* [svn-r13814] Description:Quincey Koziol2007-05-2913-57/+60
| | | | | | | | | | | | | | Change back to clearing memory buffers by default, but give users option to disable this, for performance reasons (--disable-clear-file-buffers). Also, add configure option (--enable-using-memchecker) to conveniently control making the library "play nice" with memory checking tools like valgrind and purify. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13811] Description:Quincey Koziol2007-05-291-1/+1
| | | | | | | | Update information printed when the file module's debugging is enabled and file memory is leaked. Tested on: Linux/32 2.6 (chicago)
* [svn-r13808] Description:Quincey Koziol2007-05-242-11/+19
| | | | | | | | | | | | | Fix possible file corruption when using "new" format object headers and the size of chunk #0 for an object header transitions between needing 1->2->4->8- byte encoding for the size and there are "clean" messages in the object header already. (Usually triggered by flushing the file while adding attributes to an object) Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13807] Description:Quincey Koziol2007-05-241-35/+2
| | | | | | | | | | | Fix error which attempted to allocate space for attribute that has a 'null' dataspace. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13806] Description:Quincey Koziol2007-05-241-1/+1
| | | | | | | | | | Correct prototype for H5Sextent_equal() Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13803] Optimization of reading compound data.Raymond Lu2007-05-231-59/+139
| | | | | | | | | | | | | | | | | Optimize a special case when the source members are a subset of destination, and the order is the same, and no conversion is needed. For example: struct source { struct destination { TYPE1 A; --> TYPE1 A; TYPE2 B; --> TYPE2 B; TYPE3 C; --> TYPE3 C; }; TYPE4 D; TYPE5 E; }; The optimization is simply moving data to the appropriate places in the buffer. This optimization work is for the Chicago company. Tested on sol, copper, smirom, liberty.
* [svn-r13798] Description:Quincey Koziol2007-05-231-8/+4
| | | | | | | Clean up compiler warnings Tested on: Mac OS X/32 10.4.9 (amazon)
* [svn-r13797] Description:Quincey Koziol2007-05-231-80/+0
| | | | | | | | Re-enable fast attribute comparisons "in place" in the fractal heap. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13796] Description:Quincey Koziol2007-05-239-204/+242
| | | | | | | | | Clean up ISOHM code further and get rid of several non-optimal ways of working with object headers. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13794] Description:Quincey Koziol2007-05-222-3/+3
| | | | | | | Add 'const' to some pointers in internal routines. Tested on: Linux/32 2.6 (chicago)
* [svn-r13793] Pedro Vicente Nunes2007-05-221-2/+2
| | | | | | | | Clean temporary test files Tested: linux, SunOS Note: the files outside tools were generated by bin/reconfigure
* [svn-r13784] Description:Quincey Koziol2007-05-221-2/+8
| | | | | | | | Close memory leak in error situation for opening a dataset. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13774] Description:Quincey Koziol2007-05-201-10/+10
| | | | | | | | | Fix memory leak of attribute's group hier. path Reduce compiler warnings w/gcc 4.2 Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13773] Description:Quincey Koziol2007-05-2010-175/+174
| | | | | | | Reduce compiler warnings w/gcc 4.2 Tested on: FreeBSD/32 6.2 (duty) w/gcc 4.2
* [svn-r13772] Description:Quincey Koziol2007-05-201-5/+5
| | | | | | | Reduce compiler warnings when free list manager is disabled. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13771] Description:Quincey Koziol2007-05-192-1/+5
| | | | | | | Fix some more unitialized variables that were flagged by valgrind. Tested on: FreeBSD/32 6.2 (duty) w/valgrind
* [svn-r13770] Description:Quincey Koziol2007-05-197-13/+22
| | | | | | | Clean up various memory leaks, etc. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13769] Description:Quincey Koziol2007-05-193-3/+3
| | | | | | | Clean up minor compiler warnings Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13766] In Visual Studio 2005 for 64-bit, _WIN32 is defined, but not ↵Scott Wegner2007-05-1811-80/+80
| | | | | | | WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform. Tested: Visual Studio (32- and 64-bit) on Win XP
* [svn-r13758] Description:Quincey Koziol2007-05-161-1/+1
| | | | | | | Change "long long" to "long_long", to make VS6 happy. Tested on: None, just eyeballed since it's easy
* [svn-r13754] VMS port:Elena Pourmal2007-05-151-1/+7
| | | | | | | | Updated command files; added "extern "C"" for HDremove_all function. Platforms tested: VMS server; kagiso - very minor and affects only VMS
* [svn-r13753] Description:Quincey Koziol2007-05-1449-1081/+1933
| | | | | | | | | | | | | Check in "unique, but sharable" optimization to ISOHM code, which allows object header messages that are only used in one object to remain in the sole user's header, but migrates messages that are used in more than one header into the ISOHM heap. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13751] Description:Quincey Koziol2007-05-141-2/+2
| | | | | | | | | Reduce the number of warnings when free lists are disabled. Tested on: Mac OS X /32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13750] Description:Quincey Koziol2007-05-148-12/+29
| | | | | | | | | Various minor cleanups found while working on the "unique, but sharable" ISOHM changes. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13747] Description:Quincey Koziol2007-05-101-63/+65
| | | | | | | | | | Fix H5O_msg_iterate() and H5O_link() to protect cache entries with better permissions. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13745] Description:Quincey Koziol2007-05-1014-564/+370
| | | | | | | | | | | | Take further advantage of the readers/writer locking in the metadata cache and push the locking of the local heap up to the routines which call B-tree routines, which should drastically lower the number of metadata cache protect/ unprotect calls. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13744] Description:Quincey Koziol2007-05-102-115/+68
| | | | | | | | | | | | | | | Initial changes to take advantage of readers/writer locking on metadata cache entries. Reduce the # of protect/unprotect pairs during B-tree iteration by holding reader lock on B-tree and symbol table nodes while iteration occurs. This also has the benefit of preventing an iteration callback from modifying the B-tree being iterated over (which would probably confuse the B-tree iteration code terribly) Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13743] Description:Quincey Koziol2007-05-103-90/+201
| | | | | | | | | | | Don't delete chunks from the dataset's B-tree while we are iterating over the B-tree, when reducing the size of the dataset's dataspace with H5Dset_extent(). Tested on: Mac OS X/32 2.6 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13742] Description:Quincey Koziol2007-05-101-5/+28
| | | | | | | | | Avoid copying attribute in a few iteration situations. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13741] Description:Quincey Koziol2007-05-101-0/+3
| | | | | | | | | Minor formatting & warning reduction code cleanups Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13733] Changed more parallel debugging info. to a more standard way by ↵MuQun Yang2007-05-041-33/+52
| | | | | | using H5DEBUG. Have tested at linux to make sure the change won't cause any compiling errors or testing errors.
* [svn-r13730] Remove debug information inside H5Dmpio.c when enable-debug is ↵MuQun Yang2007-05-031-48/+71
| | | | | | | | turned on. More code will be cleaned up tomorrow. Since only debugging information is removed, I tested this only at kagiso(linux mpich). Kent
* [svn-r13726] Add H5P_reset_external_file_test to the header file.Peter Cao2007-05-021-0/+1
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* [svn-r13722] Description:Quincey Koziol2007-05-021-1/+1
| | | | | | | | Fix typo that causes non-Purified build to fail. Tested: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13721] Description:Quincey Koziol2007-05-0113-178/+398
| | | | | | | | | | | | | Add "fail if unknown" and "mark if unknown" flags to object header messages. This gives the library a clean way to tell older libraries that a message should not be just ignored if it's unknown, but that other actions should occur. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13717] Description:Quincey Koziol2007-05-012-4/+6
| | | | | | | | Clean up some formatting, comments and error messages. Tested on: Mac OS X/32 10.4.9 (amazon) Too minor to require h5committest
* [svn-r13714] Fix memory leak on objcopy.c testPeter Cao2007-04-301-0/+47
| | | | | H5Premove(dcpl, H5D_CRT_EXT_FILE_LIST_NAME) causes memory leak. Use new function H5P_reset_external_file_test(dcpl) instead.
* [svn-r13711] Description:Quincey Koziol2007-04-302-158/+239
| | | | | | | | Reduce size of fill value message in default setting case (since it can't be eliminated). Tested on: Mac OS X/32 10.4.9 (amazon)
* [svn-r13704] Change to H5G_get_refobj_name so that H5I_get_name returns the ↵Christian Chilan2007-04-271-1/+1
| | | | length of the name of a dereferenced object without counting the null terminator. Tested on smirom, copper, and cobalt.
* [svn-r13700] Updated the copyright generated by the program to the THG notice.Albert Cheng2007-04-241-2/+3
| | | | | Tested: kagiso (no committed test since it is trivial.)
* [svn-r13694] 1. changed the HDlseek to be lseek64 and HDfseek to be fseeko ↵Raymond Lu2007-04-231-2/+10
| | | | | | | | | if available, to support big files. 2. added a check in test/big.c to make sure the system supports big file. Tested on smirom because already tested the same changes for v1.6 on liberty, smirom, copper, and sol.
* [svn-r13692] Snapshot version 1.8 release 0 (beta1post0)HDF Tester2007-04-231-2/+2
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