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the option from the CMake cache init files.
Fixes HDFFV-10184
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Made couple changes based on the review comments.
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This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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running script to make changes.
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~BYRN/hdf5_adb:bugfix/HDFFV-9655-plugin-path-relative to develop
* commit 'a995a63085d88e1a633770536efeff5b01569445':
HDFFV-9655 fix test and some warnings
HDFFV-9655 fix compile and test
HDFFV-9655 - Add functions for '@' - untested
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bugfix/HDFFV-9655-plugin-path-relative
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the parallel library.
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* commit '5f7822fac4673cdb9e8ed60d104566c9df43303f':
Express test mods to test/cache.c
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Modified test/cache.c to skip the smoke checks with paged aggregation
for all express test levels other than 0
Change to src/H5PL.c seems to be the result of autogen.sh. As it
seems to be correct, I am checking it in.
Tested serial and parallel (debug only) on jelly.
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1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0
2) Minor fixes to test/fheap.c that somehow were missed from last check in. See pull request #396 review comments.
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(https://jira.hdfgroup.org/browse/HDFFV-10055).
Briefly, in H5C_collective_write() in H5Cmpio.c,
the metadata cache attempts to perform a collective
write of metadata cache entries.
This worked fine as long as all processes had at
least one entry to write.
However, when the process has no entries, the
function tries to participate in the collective write
by calling MPI_File_set_view(),
MPI_File_write_all() and then MPI_File_set_view()
again, to match the calls in H5FD_mpio_write().
After pull request 183, the CGNS test benchmark_hdf5
started failing. On investigation, I determined that
the failure occurred in the first call to MPI_File_set_view()
in the "no data to write" path through H5C_collective_write().
Note that pull request 183 did not create the problem,
it only exposed it. The bug can be observed after pull
request 182 if one executes the CGNS progam
src/ptests/benchmark_hdf5 with 90 processes.
The problem appears to have been that the calls to
MPI_File_set_view() in H5C_collective_write() and
H5FD_mpio_write() were using different values for the
info parameter. I patched the problem by adding a
MPI specific VFD call allowing me to get the MPI_Info
used in H5FD_mpio_write() for use in
MPI_File_set_view() calls in H5C_collective_write().
Tested serial & parallel, debug & production on
Jelly.
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* commit 'b56fb149c9a3c9dca11b406b7a2488f0c93ee187':
Updated the H5L.c error message after additional thought. Fix for HDFFV-10141.
Updated an error message in H5L.c to be more helpful. Fixes HDFFV-10141.
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Fix for HDFFV-10141.
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Fixes HDFFV-10141.
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* commit '2412158ed8326a3f3d62fbd947e470667d0b5951':
Add new file COPYING_LBNL_HDF5.
Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries"
Add LBNL license file and modify COPYING file accordingly.
Omnibus checkin for several relatively minor modifications:
Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release.
Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
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to develop
Fix HDFFV-8089
* commit '52f8c2ed494ea1b89374981ecc6901abe8fd5fed':
Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp3 into develop
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Description:
Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated
data structure but not caught because the case of H5D_CHUNK_DEBUG being
defined was never tested. It was commented out.
I defined H5D_CHUNK_DEBUG, tested, and commented out again.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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1) Added code test/page_buffer.c to verify that page buffering is
disabled in parallel builds.
2) Added code to test/cache_image.c to verify correct interaction
between evict on close and cache image -- in particular management
of a file containing a cache image containing dirty metadata that
has been opened R/O. Also fix for the bug exposed.
3) Added code to testpar/t_cache_image.c to verify expected procedure
for reading cache images, and also supporting stats collection code
needed for the test.
4) Repair of an overactive sanity check in H5C__reconstruct_cache_contents().
5) Other minor tidies in passing.
Tested serial and parallel, debug and production on Jelly.
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H5Pget_cache_image_config()"
This reverts commit dd5105fc9912c77f6d6074700d83e5e8282e86c9.
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version test expected output file.
Update version on develop branch to 1.11.0.
Please enter the commit message for your changes. Lines starting
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* commit 'b7c58f7dfca66d4caa26d7f8b318ad3514b8c46f':
Minor code changes to address comments in pull request
Checkin of additions to cache image parallel test code and associated bug fixes.
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associated bug fixes.
Also, modifications to H5PB_dest() to flush the page buffer before
destroying the page buffer. This is necessary, as when persistant
free space managers are enabled, the page buffer will typically contain
dirty FSM data at page buffer destroy time.
Tested serial/debug, serial/production, serial/check-vfd/debug,
parallel/debug, parallel/production on Jelly.
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