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* [svn-r30231] HDFFV-9944: else statement and braces.Allen Byrne2016-08-011-17/+24
| | | | refactored out the assert statement since H5MM_xfree allows null argument.
* [svn-r30224] Added HDprintf() macro that uses HDfprintf w/ stdout.Dana Robinson2016-07-271-1/+3
| | | | | Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial
* [svn-r30219] Description:Quincey Koziol2016-07-2212-38/+50
| | | | | | | | | More warning cleaups: down to 770 warnings (from ~940) in 134 files (from 148), with 28 unique kinds of warnings (from 31). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30189] Description:Quincey Koziol2016-07-1816-350/+475
| | | | | | | | | Clean up more warnings: drop the warning count from ~1310 down to ~940, with only 31 types of warnings in 148 files (down from 38 types in 167 files). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30158] Description:Quincey Koziol2016-07-072-3/+17
| | | | | | | | More warning cleanups. This brings us down to ~1300 warnings in 167 files Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30147] Removed #ifdef-guarded debug output from core VFD.Dana Robinson2016-07-061-72/+15
| | | | | Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial w/ core and core_paged VFDs
* [svn-r30143] Fix for HDFFV-9940.Vailin Choi2016-07-044-0/+54
| | | | Tested on jam, osx1010test, moohan, platypus, emu, kite, kituo, mayll, ostrich, quail.
* [svn-r30139] Description:Quincey Koziol2016-07-026-0/+178
| | | | | | | | Bring over missing flush+refresh routines, to address Java failures. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production Linux/64 2.6.18 (jam) w/Java
* [svn-r30131] Fix bug reported by Cisco Talos TALOS-CAN-0178. Added check for ↵Neil Fortner2016-07-012-0/+5
| | | | | | | | | a message that should not be sharable being marked as sharable on disk, returns failure in this case. Needs testing. Tested: ummon
* [svn-r30127] Description:Quincey Koziol2016-06-301-0/+52
| | | | | | | | | Use internal rounding routine, if the StdC ones aren't available (like on Windows). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30126] Description:Quincey Koziol2016-06-301-1/+3
| | | | | | | | Correct build error with non-debug parallel builds Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30113] Description:Quincey Koziol2016-06-2818-588/+717
| | | | | | | | Clean up warnings (from 2774 -> 1560, with my standard debug build) Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30112] Description:Quincey Koziol2016-06-2813-1742/+919
| | | | | | | | | | Move updated flush dependency code in metadata cache from revise_chunks branch to trunk. Also many of the cleanups from r30111 in the revise_chunks branch. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30102] Cleaned up incorrect comments in H5AC_type_t enum.Dana Robinson2016-06-231-29/+29
| | | | | | Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial (comment and whitespace changes only)
* [svn-r30075] Description:Quincey Koziol2016-06-1421-10/+995
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-1317-19/+648
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30053] Description:Quincey Koziol2016-06-083-71/+223
| | | | | | | | | Create iterator routine for tagged entries and refactor current routines to use it. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30035] Description:Quincey Koziol2016-06-065-418/+497
| | | | | | | | Extract tagging routines into separate source module. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30033] Description:Quincey Koziol2016-06-065-188/+249
| | | | | | | | Extract epoch marker metadata client into separate source file. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30031] Description:Quincey Koziol2016-06-061-2/+1
| | | | | | | | Minor code cleanup to align w/revise_chunks branch. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30025] Description;Quincey Koziol2016-06-061-2/+3
| | | | | | | | Bring a few code cleanups in from thr revise_chunks branch. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30023] Description:Quincey Koziol2016-06-062-47/+47
| | | | | | | | Make the trace open/close routines static. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30017] Description:Quincey Koziol2016-06-068-59/+59
| | | | | | | | | Bring warning cleanusp in r29990, 29993, 29997, 29999, 30004 from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production. (h5committest forthcoming)
* [svn-r30009] Fix for h5format_convert daily test failures when ↵Vailin Choi2016-06-041-1/+3
| | | | | | --enable-using-memchecker. Tested on jam, ostrich, moohan, osx1010test, quail, kite, mayll.
* [svn-r30002] Fixed some minor warnings in H5AC.c and H5C.c, cleaned up warningsDana Robinson2016-06-012-2/+2
| | | | | | | | in the cache tests, and made some huge static arrays dynamic in the cache tests. Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial
* [svn-r29985] Description:Quincey Koziol2016-05-304-425/+451
| | | | | | | | Extract query routines into separate source module. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r29980] Description:Quincey Koziol2016-05-301-19/+19
| | | | | | | | Cleanup whitespace to align w/revise_chunks branch Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29978] Description:Quincey Koziol2016-05-302-23/+27
| | | | | | | | | | Bring r29914 from revise_chunks branch to trunk: Banished -Wformat= warnings from the library, tools, and tests. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29976] Description:Quincey Koziol2016-05-301-53/+18
| | | | | | | | | | Bring over remaining piece of r29675 from revise_chunks branch: Refactor coding in H5D__farray_idx_delete() to be similar to H5D__earray_idx_delete() Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29969] Description:Quincey Koziol2016-05-298-25/+152
| | | | | | | | | | | Bring r29934 from revise_chunks branch to trunk: (1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit. (2) Modifications to better handle error recovery when conversion by h5format_convert fails. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29924] Description:Quincey Koziol2016-05-1210-51/+584
| | | | | | | | Bring h5format_convert tool from revise_chunks branch to trunk. Tested on: MacoSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29884] VDS correction for get_space_status, with test change.Allen Byrne2016-05-041-32/+40
| | | | | Add new files for repack tests. Add repack tests for VDS files.
* [svn-r29862] Convert source list names from *_SRCS to *_SOURCES.Allen Byrne2016-05-041-123/+123
| | | | Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
* [svn-r29850] Description:Quincey Koziol2016-05-0122-173/+946
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29842] Description:Quincey Koziol2016-04-3011-58/+96
| | | | | | | | | Bring [appropriate portions of] r29811, 29813, 29826, 29830, 29831 from revise_chunks branch to the trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29815] Description:Quincey Koziol2016-04-263-6/+6
| | | | | | | | Change 'value' pointer to H5Pset() from 'void *' to 'const void *'. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (h5committest forthcoming)
* [svn-r29776] Description:Quincey Koziol2016-04-246-3/+62
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29775] Description:Quincey Koziol2016-04-241-0/+4
| | | | | | | | Another change for 'none' file pointers. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29770] Description:Quincey Koziol2016-04-238-9/+553
| | | | | | | | Bring 'none' chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29742] Description:Quincey Koziol2016-04-191-0/+1
| | | | | | | Add missing source file for single chunk index. Tested on: Windows (via daily testing
* [svn-r29738] Description:Quincey Koziol2016-04-199-19/+650
| | | | | | | | Bring "single" chunk index from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd) (h5committest forthcoming)
* [svn-r29722] Description:Quincey Koziol2016-04-171-0/+17
| | | | | | | | Bring over more dataset tests from the revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29717] Description:Quincey Koziol2016-04-163-6/+12
| | | | | | | | | | Correct chunk index computation for earrays and farrays, particularly when copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size) that require iterating over all chunks. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29715] Description:Quincey Koziol2016-04-161-11/+15
| | | | | | | | | Clean up coding to increment/decrement underlying FAPL for multi/split VFDs, to avoid copying property lists as much. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29712] Description:Quincey Koziol2016-04-162-2/+2
| | | | | | | | Minor code cleanups to address typos & warnings. Tested on: MaOSX/64 10.11.4 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r29668] Added H5Dfarray.c to CMake.Dana Robinson2016-04-081-0/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 CMake serial
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-0712-22/+1782
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
* [svn-r29655] Added H5D_CHUNK_BTREE to the deprecated section of H5Dpublic.h.Dana Robinson2016-04-071-0/+1
| | | | Tested on: 64-bit Ubuntu 15.10 (build only, not used in existing code)
* [svn-r29644] Description:Quincey Koziol2016-04-061-1/+1
| | | | | | | | Finish correcting initializer for chunked layouts. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (to minor to require h5committest)
* [svn-r29640] Description:Quincey Koziol2016-04-051-1/+1
| | | | | | | | Add missing inializer from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (Too minor to require h5committest)
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