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* [svn-r22943] Changed the spelling of accessability to accessibility.Mark Evans2012-10-225-10/+10
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* [svn-r22935] Description:Quincey Koziol2012-10-211-14/+11
| | | | | | | | | Clean up a few warnings and minor code issues during review of enum -> int/float conversion changes. Tested on: Mac OSX/64 10.8.2 (amazon) w/debug (too minor to require h5committest)
* [svn-r22921] Description:Quincey Koziol2012-10-181-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | Review Coverity changes and bring them back to trunk. (QK & JK) r20402: Added #includes for h5tools.y or h5tools_utils.h as required to remedy implicit function declarations which caused compiler warnings and coverity issues 703-4 and 708-11. r20414: This is related to the previous checkin r20399. There were incorrect updates which caused incorrect behavior when no file was given. Also possible segfault when handling hyperslab options. Simplify the code changes. r20449: Description: Modified H5E_walk2_cb to check return value of H5I_object_verify. r20450: fixed coverity 813 Tested on: Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, debug & threadsafe (too minor to require h5committest)
* [svn-r22915] Description:Quincey Koziol2012-10-172-6/+4
| | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes back to trunk: r20399: Change parse_command_line to free hand structure on error and only "leave()" at end of main. r20400: Purpose: Fix coverity issue 592 Description: Added void cast to call to H5F_sfile_assert_num() in H5F_term)interface(). There is no need to check the return value of this function in general, and there would be nothing to do even if it did fail. r20401: Added free(src_sizes) and free(src_offset). --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, threadsafe (too minor for h5committest)
* [svn-r22914] I checked in the conversion function H5T__conv_enum_numeric ↵Raymond Lu2012-10-173-0/+89
| | | | | | (numeric type means integer or floating number) and the C test for it. This is the work for Chicago. Tested on jam, koala, and ostrich.
* [svn-r22908] Reverted changes in revision 22819Larry Knox2012-10-161-2/+0
| | | | Tested with h5committest on jam, koala and ostrich.
* [svn-r22866] Description:Quincey Koziol2012-10-0512-122/+184
| | | | | | | | | Correct use of 'uint8_t' parameter type in public header file (which was causing Windows builds to fail). Tested on: Mac OSX/64 10.7.5 (amazon) w/debug (too minor to require h5committest)
* [svn-r22846] Snapshot version 1.9 release 131HDF Tester2012-09-302-3/+3
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* [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that ↵Larry Knox2012-09-271-0/+2
| | | | | | if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. Tested on jam,koala,ostrich(h5committest) and other THG machines.
* [svn-r22817] Description:Quincey Koziol2012-09-261-0/+1
| | | | Update CMake files for new encode/decode property list files.
* [svn-r22807] Description:Quincey Koziol2012-09-2527-257/+4470
| | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* [svn-r22802] Snapshot version 1.9 release 130HDF Tester2012-09-232-3/+3
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* [svn-r22785] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate ↵Allen Byrne2012-09-181-0/+5
| | | | | | variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders Tested: jam with intel compilers
* [svn-r22772] Synch line spaces with 1.8Allen Byrne2012-09-171-0/+21
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* [svn-r22766] Snapshot version 1.9 release 129HDF Tester2012-09-162-3/+3
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* [svn-r22763] Purpose:Jonathan Kim2012-09-142-5/+5
| | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Fixed Daily test failed from the previous commit r22735. (ember) Also changed H5Pget_mpio_no_collective_cause() parameter type from H5D_mpio_no_collective_cause_t to uint32_t due to change to return combined bitmap value which can be not emun defined value. Tested: jam (linux32-LE), koala-pp (linux64-LE), ember, h5committest
* [svn-r22758] Description:Quincey Koziol2012-09-1313-336/+335
| | | | | | | | | | | | | Bring generic improvements from encode/decode property list branch to the trunk. This includes a better version of the property list comparison routine, cleaned up compiler warnings, and some cleaned up property list callbacks. Also, started on changes to clean up parallel test output, so that it doesn't report successful tests from each process. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel Linux 2.6/32 (jam) w/debug Solaris 2.7/64 (linew) w/debug
* [svn-r22750] Removed check-in r22746 because it causes an error in objcopy ↵Scot Breitenfeld2012-09-101-4/+0
| | | | | | on Linew 64 byte. Will check-in again after the issue is resolved.
* [svn-r22749] Description:Dana Robinson2012-09-1010-758/+887
| | | | | | | Undo of accidental check-in of H5T code in last check-in. Tested on: jam w/ parallel enabled (revert to pre-existing code)
* [svn-r22748] Description:Dana Robinson2012-09-1011-890/+761
| | | | | | | H5FD_FLMAP_SINGLE changed to H5FD_FLMAP_DICHOTOMY in the MPI-POSIX VFD. Tested on: jam w/ parallel and fortran enabled (minor change)
* [svn-r22746] Description:Scot Breitenfeld2012-09-091-0/+4
| | | | | | | | Fix for HDFFV-7959 H5Rdereference should check for default (HADDR_UNDEF) value and not continue processing and return so that ret value can be checked and handled properly. Added fix and test, reviewed: Tested: jam (gnu, intel)
* [svn-r22745] Snapshot version 1.9 release 128HDF Tester2012-09-092-3/+3
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* [svn-r22735] Purpose:Jonathan Kim2012-09-047-29/+163
| | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22732] Snapshot version 1.9 release 127HDF Tester2012-09-022-3/+3
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* [svn-r22722] Update all references from configure.in to configure.acAllen Byrne2012-08-281-2/+2
| | | | Tested: h5committest
* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-232-15/+16
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22707] Description:Quincey Koziol2012-08-226-201/+171
| | | | | | | | | | Bring back some more cleanups from the plist_encode_decode branch, clean up some formatting and compiler errors, and add a few more property comparison routines that we've skipped implementing in the past. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-221-75/+134
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22703] Description:Dana Robinson2012-08-212-556/+541
| | | | | | | | Propagated Windows and POSIX correctness changes from SEC2 VFD to the MPI-POSIX VFD. Fixes HDFFV-8058. Tested on: jam w/ parallel and fortran enabled
* [svn-r22700] Description:Dana Robinson2012-08-203-10/+44
| | | | | | | | Minor refactoring to extract managed object length determination. This makes the tiny, managed, and huge code work alike. Tested on: jam (very minor change, no need for full commit test)
* [svn-r22697] Snapshot version 1.9 release 126HDF Tester2012-08-193-4/+5
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* [svn-r22694] Description:Dana Robinson2012-08-171-88/+74
| | | | | | | Minor change to consolidate odd bitmasking due to an old bugfix. Tested on: jam (very minor change)
* [svn-r22681] Description:Quincey Koziol2012-08-1510-1071/+590
| | | | | | | | Clean up file driver property handling, along with some misc. warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe (h5committest upcoming)
* [svn-r22679] Changed H5O_copy_search_comm_dt_check() to use H5O_obj_class() ↵Vailin Choi2012-08-141-6/+10
| | | | | | to get object type instead of H5O_get_info(...TRUE...) saving time in traversing metadata. (This is part of the checkin to 1.8 branch #22677)
* [svn-r22676] Changes needed to make the default free-list mapping from ↵Vailin Choi2012-08-1315-44/+402
| | | | H5FD_FLMAP_SINGLE to H5FD_FLMAP_DICHOTOMY.
* [svn-r22670] Snapshot version 1.9 release 125HDF Tester2012-08-122-3/+3
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* [svn-r22668] Description:Quincey Koziol2012-08-114-34/+146
| | | | | | | | | Have free space manager use temporary address space for storing the section info, until the file is flushed or closed. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe (h5committest forthcoming)
* [svn-r22666] Description:Quincey Koziol2012-08-117-181/+401
| | | | | | | | | | Merge "flush me last" & "flush me collectively" feature from the avoid_truncate branch back to the trunk. (To help enable allowing the free space section info to reside in temporary address space) Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe (h5committest forthcoming)
* [svn-r22657] Bug fix: previous commit has a mistake--it used the wrong type ↵Albert Cheng2012-08-091-1/+1
| | | | | | | | of return value of FAIL. The function type is a pointer. Fixed it by changing it to NULL. Tested: In remote machine ADA (aix).
* [svn-r22646] Description:Quincey Koziol2012-08-0816-45/+82
| | | | | | | | | Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r22629] Snapshot version 1.9 release 124Larry Knox2012-08-052-3/+3
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* [svn-r22627] Description:Quincey Koziol2012-08-0317-95/+179
| | | | | | | | | Merge some of the changes on the plist_encode_decode branch back to the trunk. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22608] Description:Quincey Koziol2012-07-2647-488/+689
| | | | | | | | | | | | | | | Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
* [svn-r22601] Purpose: Fix HDFFV-5853Neil Fortner2012-07-2514-31/+53
| | | | | | | | | | | | | | Description: When jumping out from between H5_BEGIN_TAG and H5_END_TAG macros using HGOTO_ERROR or HGOTO_DONE, the previous metadata tag is not reset on the dxpl. This could cause problems when, for example, calling H5Ocopy within an H5Literate callback. Added new HGOTO_ERROR_TAG and HGOTO_DONE_TAG macros which must be used in place of the above between H5_BEGIN_TAG and H5_END_TAG. Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22582] Description:Quincey Koziol2012-07-1622-466/+733
| | | | | | | | | Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* [svn-r22575] Issue 8068 - A user reported some random data in the padding of ↵Raymond Lu2012-07-131-2/+2
| | | | | | fill value. The problem happened in H5P_get_fill_value. I believe it's because the background buffer wasn't big enough. So I corrected it in this checkin. Tested on jam and koala - simple change.
* [svn-r22525] Snapshot version 1.9 release 124Larry Knox2012-07-092-3/+3
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* [svn-r22490] I took out the "return an error" line in H5Dget_offset, to ↵Raymond Lu2012-06-251-2/+0
| | | | | | | | match what the RM says about the function behavior. Quincey added it some time ago without realizing it caused test errors (Issue 8072). Tested on ostrich, MacGoblin - simple change.
* [svn-r22487] Snapshot version 1.9 release 122HDF Tester2012-06-242-3/+3
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* [svn-r22471] Add check for MINGW - ws2_32 libraryAllen Byrne2012-06-181-0/+3
| | | | Tested: windows - mingw
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