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This reverts commit 431123503d387bce30b1f6db7dc4ad3a33bc51bb.
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This reverts commit 911b1ca67fdf7c2f3a32dd42c591e4e9b2fa1950.
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linking to the deprecated MPI C++ wrappers. Fixes HDFFV-10893.
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* commit 'b477f9bcc7bb83d7c06e1d09f428030f51d71897':
HDFFV-10901 add missing config options
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* commit '0de0965c61823186ac61c0d6876d4d77578e5bcc':
Fix issue in H5Lcreate_hard and H5Olink where entire H5VL_loc_params_t structure was passed via varargs
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structure was passed via varargs
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develop
- Added new chunk query functions: H5Dget_num_chunks(), H5Dget_chunk_info(), and H5Dget_chunk_info_by_coord()
- Fixed iterator issue in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate()
* commit '96dab622e3bbe75d85b0cef3ca2bd5288cf4ac32':
Fixed error code and error messages Tested on Jelly (very minor)
Changed H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COOR to H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COORD per a review comment.
Updated comments
Updated based on reviews and refactored test code
Code cleanup and refactor
Re-ordered items w.r.t. date.
Fixed typo
Added notes about HDFFV-10677 and HDFFV-10661
HDFFV-10677 and HDFFV-10661
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Tested on Jelly (very minor)
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H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COORD per a review comment.
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5-bmr into develop
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Description:
- Added functions to query chunk information:
H5Dget_num_chunks(dset_id, fspace_id, *nchunks)
Gets the number of written chunks that intersect with the given
dataspace. However, in this version, the intersection is not
yet completed. Thus, the number of all written chunks will be
returned.
H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size)
Given a chunk's logical coordinates, returns the chunk's filter,
address, and size.
H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size)
Given a chunk's index, returns the chunk's logical coordinates, filter,
address, and size. The chunk belongs to a set of chunks that have
nonempty intersection with the specified dataspace. However, in
this version, the intersection is not yet completed, and the index
is of all the written chunks.
These functions comply with VOL.
- Fixed some oversights found in the library for the tests in chunk_info.c
to work correctly. The returned value from a callback function was not
checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate().
This oversight caused a callback function to continue iterating even though
it's supposed to stop.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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Remove unused routine H5F_set_coll_md_read().
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for file locking instead of a pointer.
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develop
* commit '3090ac81506094ee510ae89c31749b5c1632aa34':
Add a 'closing' flag on the shared file struct, and switch several of the "internal" data structures to use it.
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"internal" data structures to use it.
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VFD info in H5FDmpio.c.
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naming convention for shared structs in rest of library data structures.
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file pointers.
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top file pointers.
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of top file pointers.
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instead of the 'top' file pointer.
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pointer.
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file pointer.
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routines.
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bugfix/HDFFV-10813-swmr-test-fails-on-jelly-with
* commit '3a504899eef1a66031c6f52623c24bb4e51ca51e':
Correct name of folder
Mostly whitespace in testpar, addl changes for tmp dir
Whitespace cleanup
Added public H5Sselect_adjust_u and H5Shyper_adjust_s calls.
Some refactoring prior to implementing new H5P MPI functions. * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately.
Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
Changed the directory name left out from the previous commit.
Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts.
Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameter
HDFFV-10879 fix test varname
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~DEROBINS/hdf5_der:H5Pset_fapl_mpi to develop
* commit 'bd8da502cf5b763433e3c628a4043a4264529cec':
Some refactoring prior to implementing new H5P MPI functions. * Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately.
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